data_1PD2
#
_model_server_result.job_id            cu-i0w69RAJt_YQde2y_eg 
_model_server_result.datetime_utc      '2024-11-05 19:53:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1pd2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    1PD2 
#
_exptl.entry_id    1PD2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              307.323 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLUTATHIONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1PD2 
_cell.length_a            56.5 
_cell.length_b            56.5 
_cell.length_c            233.4 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1PD2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H17 N3 O6 S' 
_chem_comp.formula_weight    307.323 
_chem_comp.id                GSH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLUTATHIONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 CA1 GSH sing 129 n n 
N1 HN11 GSH sing 130 n n 
N1 HN12 GSH sing 131 n n 
CA1 C1 GSH sing 132 n n 
CA1 CB1 GSH sing 133 n n 
CA1 HA1 GSH sing 134 n n 
C1 O11 GSH doub 135 n n 
C1 O12 GSH sing 136 n n 
O12 H12 GSH sing 137 n n 
CB1 CG1 GSH sing 138 n n 
CB1 HB12 GSH sing 139 n n 
CB1 HB13 GSH sing 140 n n 
CG1 CD1 GSH sing 141 n n 
CG1 HG12 GSH sing 142 n n 
CG1 HG13 GSH sing 143 n n 
CD1 OE1 GSH doub 144 n n 
CD1 N2 GSH sing 145 n n 
N2 CA2 GSH sing 146 n n 
N2 HN2 GSH sing 147 n n 
CA2 C2 GSH sing 148 n n 
CA2 CB2 GSH sing 149 n n 
CA2 HA2 GSH sing 150 n n 
C2 O2 GSH doub 151 n n 
C2 N3 GSH sing 152 n n 
CB2 SG2 GSH sing 153 n n 
CB2 HB22 GSH sing 154 n n 
CB2 HB23 GSH sing 155 n n 
SG2 HSG GSH sing 156 n n 
N3 CA3 GSH sing 157 n n 
N3 HN3 GSH sing 158 n n 
CA3 C3 GSH sing 159 n n 
CA3 HA31 GSH sing 160 n n 
CA3 HA32 GSH sing 161 n n 
C3 O31 GSH doub 162 n n 
C3 O32 GSH sing 163 n n 
O32 H32 GSH sing 164 n n 
#
_atom_sites.entry_id                     1PD2 
_atom_sites.fract_transf_matrix[1][1]    0.017699 
_atom_sites.fract_transf_matrix[1][2]    0.010218 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020437 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004284 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GSH 1 1 301 301 GSH GSH . 
D 2 GSH 2 1 302 302 GSH GSH . 
E 3 HOH 1 1 302 1 HOH HOH . 
E 3 HOH 1 2 303 2 HOH HOH . 
E 3 HOH 1 3 304 3 HOH HOH . 
E 3 HOH 1 4 305 4 HOH HOH . 
E 3 HOH 1 5 306 5 HOH HOH . 
E 3 HOH 1 6 307 6 HOH HOH . 
E 3 HOH 1 7 308 7 HOH HOH . 
E 3 HOH 1 8 309 8 HOH HOH . 
E 3 HOH 1 9 310 9 HOH HOH . 
E 3 HOH 1 10 311 10 HOH HOH . 
E 3 HOH 1 11 312 11 HOH HOH . 
E 3 HOH 1 12 313 12 HOH HOH . 
E 3 HOH 1 13 314 13 HOH HOH . 
E 3 HOH 1 14 315 14 HOH HOH . 
E 3 HOH 1 15 316 15 HOH HOH . 
E 3 HOH 1 16 317 16 HOH HOH . 
E 3 HOH 1 17 318 17 HOH HOH . 
E 3 HOH 1 18 319 18 HOH HOH . 
E 3 HOH 1 19 320 19 HOH HOH . 
E 3 HOH 1 20 321 20 HOH HOH . 
E 3 HOH 1 21 322 21 HOH HOH . 
E 3 HOH 1 22 323 22 HOH HOH . 
E 3 HOH 1 23 324 24 HOH HOH . 
E 3 HOH 1 24 325 26 HOH HOH . 
E 3 HOH 1 25 326 28 HOH HOH . 
E 3 HOH 1 26 327 29 HOH HOH . 
E 3 HOH 1 27 328 30 HOH HOH . 
E 3 HOH 1 28 329 32 HOH HOH . 
E 3 HOH 1 29 330 33 HOH HOH . 
E 3 HOH 1 30 331 34 HOH HOH . 
E 3 HOH 1 31 332 35 HOH HOH . 
E 3 HOH 1 32 333 36 HOH HOH . 
E 3 HOH 1 33 334 37 HOH HOH . 
E 3 HOH 1 34 335 38 HOH HOH . 
E 3 HOH 1 35 336 39 HOH HOH . 
E 3 HOH 1 36 337 40 HOH HOH . 
E 3 HOH 1 37 338 41 HOH HOH . 
E 3 HOH 1 38 339 42 HOH HOH . 
E 3 HOH 1 39 340 43 HOH HOH . 
E 3 HOH 1 40 341 44 HOH HOH . 
E 3 HOH 1 41 342 45 HOH HOH . 
E 3 HOH 1 42 343 46 HOH HOH . 
E 3 HOH 1 43 344 47 HOH HOH . 
E 3 HOH 1 44 345 48 HOH HOH . 
E 3 HOH 1 45 346 49 HOH HOH . 
E 3 HOH 1 46 347 50 HOH HOH . 
E 3 HOH 1 47 348 51 HOH HOH . 
E 3 HOH 1 48 349 63 HOH HOH . 
E 3 HOH 1 49 350 66 HOH HOH . 
E 3 HOH 1 50 351 75 HOH HOH . 
F 3 HOH 2 1 303 23 HOH HOH . 
F 3 HOH 2 2 304 25 HOH HOH . 
F 3 HOH 2 3 305 27 HOH HOH . 
F 3 HOH 2 4 306 31 HOH HOH . 
F 3 HOH 2 5 307 52 HOH HOH . 
F 3 HOH 2 6 308 53 HOH HOH . 
F 3 HOH 2 7 309 54 HOH HOH . 
F 3 HOH 2 8 310 55 HOH HOH . 
F 3 HOH 2 9 311 56 HOH HOH . 
F 3 HOH 2 10 312 57 HOH HOH . 
F 3 HOH 2 11 313 58 HOH HOH . 
F 3 HOH 2 12 314 59 HOH HOH . 
F 3 HOH 2 13 315 60 HOH HOH . 
F 3 HOH 2 14 316 61 HOH HOH . 
F 3 HOH 2 15 317 62 HOH HOH . 
F 3 HOH 2 16 318 64 HOH HOH . 
F 3 HOH 2 17 319 65 HOH HOH . 
F 3 HOH 2 18 320 67 HOH HOH . 
F 3 HOH 2 19 321 68 HOH HOH . 
F 3 HOH 2 20 322 69 HOH HOH . 
F 3 HOH 2 21 323 70 HOH HOH . 
F 3 HOH 2 22 324 71 HOH HOH . 
F 3 HOH 2 23 325 72 HOH HOH . 
F 3 HOH 2 24 326 73 HOH HOH . 
F 3 HOH 2 25 327 74 HOH HOH . 
F 3 HOH 2 26 328 76 HOH HOH . 
F 3 HOH 2 27 329 77 HOH HOH . 
F 3 HOH 2 28 330 78 HOH HOH . 
F 3 HOH 2 29 331 79 HOH HOH . 
F 3 HOH 2 30 332 80 HOH HOH . 
F 3 HOH 2 31 333 81 HOH HOH . 
F 3 HOH 2 32 334 82 HOH HOH . 
F 3 HOH 2 33 335 83 HOH HOH . 
F 3 HOH 2 34 336 84 HOH HOH . 
F 3 HOH 2 35 337 85 HOH HOH . 
F 3 HOH 2 36 338 86 HOH HOH . 
F 3 HOH 2 37 339 87 HOH HOH . 
F 3 HOH 2 38 340 88 HOH HOH . 
F 3 HOH 2 39 341 89 HOH HOH . 
F 3 HOH 2 40 342 90 HOH HOH . 
F 3 HOH 2 41 343 91 HOH HOH . 
F 3 HOH 2 42 344 92 HOH HOH . 
F 3 HOH 2 43 345 93 HOH HOH . 
F 3 HOH 2 44 346 94 HOH HOH . 
F 3 HOH 2 45 347 95 HOH HOH . 
F 3 HOH 2 46 348 96 HOH HOH . 
F 3 HOH 2 47 349 97 HOH HOH . 
F 3 HOH 2 48 350 98 HOH HOH . 
F 3 HOH 2 49 351 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 GSH . . . C 2 2.36 43.599 21.853 1 34.69 ? N1 GSH 301 1 1 
HETATM 2 C CA1 GSH . . . C 2 1.998 42.157 21.775 1 33 ? CA1 GSH 301 1 1 
HETATM 3 C C1 GSH . . . C 2 0.749 41.966 20.871 1 31.58 ? C1 GSH 301 1 1 
HETATM 4 O O11 GSH . . . C 2 0.588 40.898 20.228 1 24.39 ? O11 GSH 301 1 1 
HETATM 5 O O12 GSH . . . C 2 -0.054 42.919 20.783 1 24.42 ? O12 GSH 301 1 1 
HETATM 6 C CB1 GSH . . . C 2 1.743 41.628 23.191 1 35.27 ? CB1 GSH 301 1 1 
HETATM 7 C CG1 GSH . . . C 2 1.607 40.122 23.268 1 41.73 ? CG1 GSH 301 1 1 
HETATM 8 C CD1 GSH . . . C 2 1.242 39.622 24.655 1 47.49 ? CD1 GSH 301 1 1 
HETATM 9 O OE1 GSH . . . C 2 1.762 40.094 25.67 1 46.58 ? OE1 GSH 301 1 1 
HETATM 10 N N2 GSH . . . C 2 0.324 38.667 24.687 1 49.1 ? N2 GSH 301 1 1 
HETATM 11 C CA2 GSH . . . C 2 -0.129 38.059 25.921 1 50.67 ? CA2 GSH 301 1 1 
HETATM 12 C C2 GSH . . . C 2 0.419 36.648 26.019 1 52.32 ? C2 GSH 301 1 1 
HETATM 13 O O2 GSH . . . C 2 0.914 36.087 25.041 1 51.23 ? O2 GSH 301 1 1 
HETATM 14 C CB2 GSH . . . C 2 -1.652 38.008 25.953 1 50.84 ? CB2 GSH 301 1 1 
HETATM 15 S SG2 GSH . . . C 2 -2.408 39.631 26.006 1 57.7 ? SG2 GSH 301 1 1 
HETATM 16 N N3 GSH . . . C 2 0.292 36.068 27.2 1 56.61 ? N3 GSH 301 1 1 
HETATM 17 C CA3 GSH . . . C 2 0.764 34.718 27.405 1 61.21 ? CA3 GSH 301 1 1 
HETATM 18 C C3 GSH . . . C 2 2.159 34.688 27.982 1 63.04 ? C3 GSH 301 1 1 
HETATM 19 O O31 GSH . . . C 2 2.914 35.656 27.742 1 64.8 ? O31 GSH 301 1 1 
HETATM 20 O O32 GSH . . . C 2 2.49 33.702 28.682 1 64.86 ? O32 GSH 301 1 1 
HETATM 21 H HN11 GSH . . . C 2 1.514 44.01 22.294 0 0 ? HN11 GSH 301 1 1 
HETATM 22 H HN12 GSH . . . C 2 2.404 43.907 20.872 0 0 ? HN12 GSH 301 1 1 
HETATM 23 H HN2 GSH . . . C 2 -0.05 38.367 23.848 0 0 ? HN2 GSH 301 1 1 
HETATM 24 H HN3 GSH . . . C 2 -0.046 36.552 27.971 0 0 ? HN3 GSH 301 1 1 
HETATM 25 H HN13 GSH . . . C 2 3.232 43.724 22.397 0 0 ? HN13 GSH 301 1 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#