data_1PD2 # _model_server_result.job_id GLDlOJN0gOTBbHxZ405xDg _model_server_result.datetime_utc '2024-11-05 19:42:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 1PD2 # _exptl.entry_id 1PD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1PD2 _cell.length_a 56.5 _cell.length_b 56.5 _cell.length_c 233.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 1PD2 _atom_sites.fract_transf_matrix[1][1] 0.017699 _atom_sites.fract_transf_matrix[1][2] 0.010218 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GSH 1 1 301 301 GSH GSH . D 2 GSH 2 1 302 302 GSH GSH . E 3 HOH 1 1 302 1 HOH HOH . E 3 HOH 1 2 303 2 HOH HOH . E 3 HOH 1 3 304 3 HOH HOH . E 3 HOH 1 4 305 4 HOH HOH . E 3 HOH 1 5 306 5 HOH HOH . E 3 HOH 1 6 307 6 HOH HOH . E 3 HOH 1 7 308 7 HOH HOH . E 3 HOH 1 8 309 8 HOH HOH . E 3 HOH 1 9 310 9 HOH HOH . E 3 HOH 1 10 311 10 HOH HOH . E 3 HOH 1 11 312 11 HOH HOH . E 3 HOH 1 12 313 12 HOH HOH . E 3 HOH 1 13 314 13 HOH HOH . E 3 HOH 1 14 315 14 HOH HOH . E 3 HOH 1 15 316 15 HOH HOH . E 3 HOH 1 16 317 16 HOH HOH . E 3 HOH 1 17 318 17 HOH HOH . E 3 HOH 1 18 319 18 HOH HOH . E 3 HOH 1 19 320 19 HOH HOH . E 3 HOH 1 20 321 20 HOH HOH . E 3 HOH 1 21 322 21 HOH HOH . E 3 HOH 1 22 323 22 HOH HOH . E 3 HOH 1 23 324 24 HOH HOH . E 3 HOH 1 24 325 26 HOH HOH . E 3 HOH 1 25 326 28 HOH HOH . E 3 HOH 1 26 327 29 HOH HOH . E 3 HOH 1 27 328 30 HOH HOH . E 3 HOH 1 28 329 32 HOH HOH . E 3 HOH 1 29 330 33 HOH HOH . E 3 HOH 1 30 331 34 HOH HOH . E 3 HOH 1 31 332 35 HOH HOH . E 3 HOH 1 32 333 36 HOH HOH . E 3 HOH 1 33 334 37 HOH HOH . E 3 HOH 1 34 335 38 HOH HOH . E 3 HOH 1 35 336 39 HOH HOH . E 3 HOH 1 36 337 40 HOH HOH . E 3 HOH 1 37 338 41 HOH HOH . E 3 HOH 1 38 339 42 HOH HOH . E 3 HOH 1 39 340 43 HOH HOH . E 3 HOH 1 40 341 44 HOH HOH . E 3 HOH 1 41 342 45 HOH HOH . E 3 HOH 1 42 343 46 HOH HOH . E 3 HOH 1 43 344 47 HOH HOH . E 3 HOH 1 44 345 48 HOH HOH . E 3 HOH 1 45 346 49 HOH HOH . E 3 HOH 1 46 347 50 HOH HOH . E 3 HOH 1 47 348 51 HOH HOH . E 3 HOH 1 48 349 63 HOH HOH . E 3 HOH 1 49 350 66 HOH HOH . E 3 HOH 1 50 351 75 HOH HOH . F 3 HOH 2 1 303 23 HOH HOH . F 3 HOH 2 2 304 25 HOH HOH . F 3 HOH 2 3 305 27 HOH HOH . F 3 HOH 2 4 306 31 HOH HOH . F 3 HOH 2 5 307 52 HOH HOH . F 3 HOH 2 6 308 53 HOH HOH . F 3 HOH 2 7 309 54 HOH HOH . F 3 HOH 2 8 310 55 HOH HOH . F 3 HOH 2 9 311 56 HOH HOH . F 3 HOH 2 10 312 57 HOH HOH . F 3 HOH 2 11 313 58 HOH HOH . F 3 HOH 2 12 314 59 HOH HOH . F 3 HOH 2 13 315 60 HOH HOH . F 3 HOH 2 14 316 61 HOH HOH . F 3 HOH 2 15 317 62 HOH HOH . F 3 HOH 2 16 318 64 HOH HOH . F 3 HOH 2 17 319 65 HOH HOH . F 3 HOH 2 18 320 67 HOH HOH . F 3 HOH 2 19 321 68 HOH HOH . F 3 HOH 2 20 322 69 HOH HOH . F 3 HOH 2 21 323 70 HOH HOH . F 3 HOH 2 22 324 71 HOH HOH . F 3 HOH 2 23 325 72 HOH HOH . F 3 HOH 2 24 326 73 HOH HOH . F 3 HOH 2 25 327 74 HOH HOH . F 3 HOH 2 26 328 76 HOH HOH . F 3 HOH 2 27 329 77 HOH HOH . F 3 HOH 2 28 330 78 HOH HOH . F 3 HOH 2 29 331 79 HOH HOH . F 3 HOH 2 30 332 80 HOH HOH . F 3 HOH 2 31 333 81 HOH HOH . F 3 HOH 2 32 334 82 HOH HOH . F 3 HOH 2 33 335 83 HOH HOH . F 3 HOH 2 34 336 84 HOH HOH . F 3 HOH 2 35 337 85 HOH HOH . F 3 HOH 2 36 338 86 HOH HOH . F 3 HOH 2 37 339 87 HOH HOH . F 3 HOH 2 38 340 88 HOH HOH . F 3 HOH 2 39 341 89 HOH HOH . F 3 HOH 2 40 342 90 HOH HOH . F 3 HOH 2 41 343 91 HOH HOH . F 3 HOH 2 42 344 92 HOH HOH . F 3 HOH 2 43 345 93 HOH HOH . F 3 HOH 2 44 346 94 HOH HOH . F 3 HOH 2 45 347 95 HOH HOH . F 3 HOH 2 46 348 96 HOH HOH . F 3 HOH 2 47 349 97 HOH HOH . F 3 HOH 2 48 350 98 HOH HOH . F 3 HOH 2 49 351 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . D 2 5.992 55.589 21.537 1 30.96 ? N1 GSH 302 2 1 HETATM 2 C CA1 GSH . . . D 2 6.381 57.03 21.565 1 32.32 ? CA1 GSH 302 2 1 HETATM 3 C C1 GSH . . . D 2 7.429 57.262 20.482 1 27.5 ? C1 GSH 302 2 1 HETATM 4 O O11 GSH . . . D 2 7.508 58.385 19.945 1 21.18 ? O11 GSH 302 2 1 HETATM 5 O O12 GSH . . . D 2 8.124 56.284 20.155 1 21.1 ? O12 GSH 302 2 1 HETATM 6 C CB1 GSH . . . D 2 6.947 57.4 22.935 1 35.04 ? CB1 GSH 302 2 1 HETATM 7 C CG1 GSH . . . D 2 7.202 58.879 23.122 1 40.83 ? CG1 GSH 302 2 1 HETATM 8 C CD1 GSH . . . D 2 7.9 59.202 24.431 1 45.03 ? CD1 GSH 302 2 1 HETATM 9 O OE1 GSH . . . D 2 7.567 58.648 25.477 1 49.19 ? OE1 GSH 302 2 1 HETATM 10 N N2 GSH . . . D 2 8.878 60.097 24.36 1 45.59 ? N2 GSH 302 2 1 HETATM 11 C CA2 GSH . . . D 2 9.631 60.529 25.524 1 46.23 ? CA2 GSH 302 2 1 HETATM 12 C C2 GSH . . . D 2 9.233 61.95 25.869 1 46.81 ? C2 GSH 302 2 1 HETATM 13 O O2 GSH . . . D 2 8.617 62.636 25.063 1 46.42 ? O2 GSH 302 2 1 HETATM 14 C CB2 GSH . . . D 2 11.128 60.483 25.23 1 44.03 ? CB2 GSH 302 2 1 HETATM 15 S SG2 GSH . . . D 2 11.755 58.834 24.985 1 45.19 ? SG2 GSH 302 2 1 HETATM 16 N N3 GSH . . . D 2 9.62 62.389 27.06 1 53.75 ? N3 GSH 302 2 1 HETATM 17 C CA3 GSH . . . D 2 9.318 63.736 27.494 1 56.99 ? CA3 GSH 302 2 1 HETATM 18 C C3 GSH . . . D 2 8.079 63.81 28.351 1 58.36 ? C3 GSH 302 2 1 HETATM 19 O O31 GSH . . . D 2 7.202 62.932 28.212 1 61.17 ? O31 GSH 302 2 1 HETATM 20 O O32 GSH . . . D 2 7.994 64.747 29.167 1 60.48 ? O32 GSH 302 2 1 HETATM 21 H HN11 GSH . . . D 2 5.255 55.357 22.218 0 0 ? HN11 GSH 302 2 1 HETATM 22 H HN12 GSH . . . D 2 6.908 55.134 21.717 0 0 ? HN12 GSH 302 2 1 HETATM 23 H HN2 GSH . . . D 2 9.089 60.482 23.491 0 0 ? HN2 GSH 302 2 1 HETATM 24 H HN3 GSH . . . D 2 10.049 61.793 27.697 0 0 ? HN3 GSH 302 2 1 HETATM 25 H HN13 GSH . . . D 2 5.776 55.435 20.539 0 0 ? HN13 GSH 302 2 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #