data_1PE5 # _model_server_result.job_id m66jIsqBahi078c1sdwHRg _model_server_result.datetime_utc '2024-11-22 20:28:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pe5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":319}' # _entry.id 1PE5 # _exptl.entry_id 1PE5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1PE5 _cell.length_a 93.8 _cell.length_b 93.8 _cell.length_c 131.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PE5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G P BR3 . A BR3 322 1_555 H N LEU . A LEU 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.686 ? covale ? covale2 G CA1 BR3 . A BR3 322 1_555 I CA LEN . A LEN 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.542 ? covale ? covale3 H C LEU . A LEU 323 1_555 I N LEN . A LEN 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A OD1 ASP 57 A ASP 57 1_555 E CA CA . A CA 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc2 A OD2 ASP 57 A ASP 57 1_555 E CA CA . A CA 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc3 A OD1 ASP 59 A ASP 59 1_555 E CA CA . A CA 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc4 A O GLN 61 A GLN 61 1_555 E CA CA . A CA 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc5 A OD1 ASP 138 A ASP 138 1_555 C CA CA . A CA 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc6 A NE2 HIS 142 A HIS 142 1_555 B ZN ZN . A ZN 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc7 A NE2 HIS 146 A HIS 146 1_555 B ZN ZN . A ZN 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc8 A OE2 GLU 166 A GLU 166 1_555 B ZN ZN . A ZN 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc9 A OE1 GLU 166 A GLU 166 1_555 B ZN ZN . A ZN 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc10 A OE1 GLU 177 A GLU 177 1_555 C CA CA . A CA 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc11 A OE2 GLU 177 A GLU 177 1_555 C CA CA . A CA 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc12 A OE2 GLU 177 A GLU 177 1_555 D CA CA . A CA 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc13 A O ASN 183 A ASN 183 1_555 D CA CA . A CA 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc14 A OD2 ASP 185 A ASP 185 1_555 C CA CA . A CA 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc15 A OD1 ASP 185 A ASP 185 1_555 D CA CA . A CA 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc16 A O GLU 187 A GLU 187 1_555 C CA CA . A CA 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc17 A OE1 GLU 190 A GLU 190 1_555 C CA CA . A CA 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc18 A OE2 GLU 190 A GLU 190 1_555 C CA CA . A CA 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc19 A OE2 GLU 190 A GLU 190 1_555 D CA CA . A CA 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc20 A O TYR 193 A TYR 193 1_555 F CA CA . A CA 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc21 A O THR 194 A THR 194 1_555 F CA CA . A CA 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc22 A OG1 THR 194 A THR 194 1_555 F CA CA . A CA 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc23 A O ILE 197 A ILE 197 1_555 F CA CA . A CA 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc24 A OD1 ASP 200 A ASP 200 1_555 F CA CA . A CA 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc25 B ZN ZN . A ZN 317 1_555 G OP1 BR3 . A BR3 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? metalc ? metalc26 C CA CA . A CA 318 1_555 J O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc27 D CA CA . A CA 319 1_555 J O HOH . A HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc28 D CA CA . A CA 319 1_555 J O HOH . A HOH 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc29 E CA CA . A CA 320 1_555 J O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc30 E CA CA . A CA 320 1_555 J O HOH . A HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc31 E CA CA . A CA 320 1_555 J O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc32 F CA CA . A CA 321 1_555 J O HOH . A HOH 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc33 F CA CA . A CA 321 1_555 J O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1PE5 _atom_sites.fract_transf_matrix[1][1] 0.010661 _atom_sites.fract_transf_matrix[1][2] 0.006155 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 317 317 ZN ZN . C 3 CA A 1 318 318 CA CA . D 3 CA A 1 319 319 CA CA . E 3 CA A 1 320 320 CA CA . F 3 CA A 1 321 321 CA CA . G 4 BR3 A 1 322 322 BR3 BR3 . H 5 LEU A 1 323 323 LEU LEU . I 6 LEN A 1 324 324 LEN NLE . J 7 HOH A 1 331 331 HOH HOH . J 7 HOH A 2 332 332 HOH HOH . J 7 HOH A 3 334 334 HOH HOH . J 7 HOH A 4 335 335 HOH HOH . J 7 HOH A 5 337 337 HOH HOH . J 7 HOH A 6 338 338 HOH HOH . J 7 HOH A 7 339 339 HOH HOH . J 7 HOH A 8 340 340 HOH HOH . J 7 HOH A 9 341 341 HOH HOH . J 7 HOH A 10 342 342 HOH HOH . J 7 HOH A 11 343 343 HOH HOH . J 7 HOH A 12 344 344 HOH HOH . J 7 HOH A 13 345 345 HOH HOH . J 7 HOH A 14 346 346 HOH HOH . J 7 HOH A 15 347 347 HOH HOH . J 7 HOH A 16 348 348 HOH HOH . J 7 HOH A 17 349 349 HOH HOH . J 7 HOH A 18 350 350 HOH HOH . J 7 HOH A 19 351 351 HOH HOH . J 7 HOH A 20 352 352 HOH HOH . J 7 HOH A 21 353 353 HOH HOH . J 7 HOH A 22 354 354 HOH HOH . J 7 HOH A 23 355 355 HOH HOH . J 7 HOH A 24 356 356 HOH HOH . J 7 HOH A 25 357 357 HOH HOH . J 7 HOH A 26 358 358 HOH HOH . J 7 HOH A 27 359 359 HOH HOH . J 7 HOH A 28 361 361 HOH HOH . J 7 HOH A 29 366 366 HOH HOH . J 7 HOH A 30 367 367 HOH HOH . J 7 HOH A 31 368 368 HOH HOH . J 7 HOH A 32 370 370 HOH HOH . J 7 HOH A 33 371 371 HOH HOH . J 7 HOH A 34 373 373 HOH HOH . J 7 HOH A 35 374 374 HOH HOH . J 7 HOH A 36 375 375 HOH HOH . J 7 HOH A 37 376 376 HOH HOH . J 7 HOH A 38 377 377 HOH HOH . J 7 HOH A 39 378 378 HOH HOH . J 7 HOH A 40 379 379 HOH HOH . J 7 HOH A 41 380 380 HOH HOH . J 7 HOH A 42 381 381 HOH HOH . J 7 HOH A 43 383 383 HOH HOH . J 7 HOH A 44 384 384 HOH HOH . J 7 HOH A 45 386 386 HOH HOH . J 7 HOH A 46 387 387 HOH HOH . J 7 HOH A 47 389 389 HOH HOH . J 7 HOH A 48 390 390 HOH HOH . J 7 HOH A 49 391 391 HOH HOH . J 7 HOH A 50 393 393 HOH HOH . J 7 HOH A 51 395 395 HOH HOH . J 7 HOH A 52 397 397 HOH HOH . J 7 HOH A 53 398 398 HOH HOH . J 7 HOH A 54 403 403 HOH HOH . J 7 HOH A 55 404 404 HOH HOH . J 7 HOH A 56 405 405 HOH HOH . J 7 HOH A 57 407 407 HOH HOH . J 7 HOH A 58 408 408 HOH HOH . J 7 HOH A 59 410 410 HOH HOH . J 7 HOH A 60 412 412 HOH HOH . J 7 HOH A 61 413 413 HOH HOH . J 7 HOH A 62 414 414 HOH HOH . J 7 HOH A 63 415 415 HOH HOH . J 7 HOH A 64 416 416 HOH HOH . J 7 HOH A 65 418 418 HOH HOH . J 7 HOH A 66 419 419 HOH HOH . J 7 HOH A 67 420 420 HOH HOH . J 7 HOH A 68 422 422 HOH HOH . J 7 HOH A 69 423 423 HOH HOH . J 7 HOH A 70 424 424 HOH HOH . J 7 HOH A 71 425 425 HOH HOH . J 7 HOH A 72 426 426 HOH HOH . J 7 HOH A 73 427 427 HOH HOH . J 7 HOH A 74 428 428 HOH HOH . J 7 HOH A 75 431 431 HOH HOH . J 7 HOH A 76 433 433 HOH HOH . J 7 HOH A 77 434 434 HOH HOH . J 7 HOH A 78 438 438 HOH HOH . J 7 HOH A 79 439 439 HOH HOH . J 7 HOH A 80 441 441 HOH HOH . J 7 HOH A 81 444 444 HOH HOH . J 7 HOH A 82 445 445 HOH HOH . J 7 HOH A 83 446 446 HOH HOH . J 7 HOH A 84 448 448 HOH HOH . J 7 HOH A 85 450 450 HOH HOH . J 7 HOH A 86 452 452 HOH HOH . J 7 HOH A 87 454 454 HOH HOH . J 7 HOH A 88 455 455 HOH HOH . J 7 HOH A 89 457 457 HOH HOH . J 7 HOH A 90 459 459 HOH HOH . J 7 HOH A 91 461 461 HOH HOH . J 7 HOH A 92 463 463 HOH HOH . J 7 HOH A 93 464 464 HOH HOH . J 7 HOH A 94 465 465 HOH HOH . J 7 HOH A 95 466 466 HOH HOH . J 7 HOH A 96 467 467 HOH HOH . J 7 HOH A 97 468 468 HOH HOH . J 7 HOH A 98 469 469 HOH HOH . J 7 HOH A 99 470 470 HOH HOH . J 7 HOH A 100 471 471 HOH HOH . J 7 HOH A 101 472 472 HOH HOH . J 7 HOH A 102 474 474 HOH HOH . J 7 HOH A 103 475 475 HOH HOH . J 7 HOH A 104 476 476 HOH HOH . J 7 HOH A 105 477 477 HOH HOH . J 7 HOH A 106 478 478 HOH HOH . J 7 HOH A 107 479 479 HOH HOH . J 7 HOH A 108 480 480 HOH HOH . J 7 HOH A 109 481 481 HOH HOH . J 7 HOH A 110 482 482 HOH HOH . J 7 HOH A 111 483 483 HOH HOH . J 7 HOH A 112 484 484 HOH HOH . J 7 HOH A 113 485 485 HOH HOH . J 7 HOH A 114 486 486 HOH HOH . J 7 HOH A 115 487 487 HOH HOH . J 7 HOH A 116 488 488 HOH HOH . J 7 HOH A 117 489 489 HOH HOH . J 7 HOH A 118 490 490 HOH HOH . J 7 HOH A 119 491 491 HOH HOH . J 7 HOH A 120 493 493 HOH HOH . J 7 HOH A 121 494 494 HOH HOH . J 7 HOH A 122 495 495 HOH HOH . J 7 HOH A 123 496 496 HOH HOH . J 7 HOH A 124 501 501 HOH HOH . J 7 HOH A 125 502 502 HOH HOH . J 7 HOH A 126 503 503 HOH HOH . J 7 HOH A 127 504 504 HOH HOH . J 7 HOH A 128 505 505 HOH HOH . J 7 HOH A 129 506 506 HOH HOH . J 7 HOH A 130 507 507 HOH HOH . J 7 HOH A 131 508 508 HOH HOH . J 7 HOH A 132 509 509 HOH HOH . J 7 HOH A 133 510 510 HOH HOH . J 7 HOH A 134 512 512 HOH HOH . J 7 HOH A 135 513 513 HOH HOH . J 7 HOH A 136 514 514 HOH HOH . J 7 HOH A 137 515 515 HOH HOH . J 7 HOH A 138 516 516 HOH HOH . J 7 HOH A 139 518 518 HOH HOH . J 7 HOH A 140 519 519 HOH HOH . J 7 HOH A 141 520 520 HOH HOH . J 7 HOH A 142 521 521 HOH HOH . J 7 HOH A 143 523 523 HOH HOH . J 7 HOH A 144 524 524 HOH HOH . J 7 HOH A 145 525 525 HOH HOH . J 7 HOH A 146 526 526 HOH HOH . J 7 HOH A 147 527 527 HOH HOH . J 7 HOH A 148 528 528 HOH HOH . J 7 HOH A 149 530 530 HOH HOH . J 7 HOH A 150 531 531 HOH HOH . J 7 HOH A 151 532 532 HOH HOH . J 7 HOH A 152 534 534 HOH HOH . J 7 HOH A 153 535 535 HOH HOH . J 7 HOH A 154 536 536 HOH HOH . J 7 HOH A 155 537 537 HOH HOH . J 7 HOH A 156 538 538 HOH HOH . J 7 HOH A 157 539 539 HOH HOH . J 7 HOH A 158 540 540 HOH HOH . J 7 HOH A 159 542 542 HOH HOH . J 7 HOH A 160 543 543 HOH HOH . J 7 HOH A 161 544 544 HOH HOH . J 7 HOH A 162 545 545 HOH HOH . J 7 HOH A 163 546 546 HOH HOH . J 7 HOH A 164 547 547 HOH HOH . J 7 HOH A 165 548 548 HOH HOH . J 7 HOH A 166 549 549 HOH HOH . J 7 HOH A 167 550 550 HOH HOH . J 7 HOH A 168 551 551 HOH HOH . J 7 HOH A 169 554 554 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 41.546 _atom_site.Cartn_y 50.717 _atom_site.Cartn_z 8.501 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 319 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #