data_1PEE # _model_server_result.job_id 3HsPPfL4h7NOUm5xGYV3lg _model_server_result.datetime_utc '2024-11-26 01:22:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pee # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 1PEE # _exptl.entry_id 1PEE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PEE _cell.length_a 34.68 _cell.length_b 34.68 _cell.length_c 258.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PEE _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 122 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf2 A SG CYS 40 A CYS 39 1_555 A SG CYS 171 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc1 A NE2 HIS 58 A HIS 57 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc2 B FE HEM . A HEM 201 1_555 C N1 IMD . A IMD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 255 n y N1 C5 IMD sing 256 n y N1 HN1 IMD sing 257 n n C2 N3 IMD doub 258 n y C2 H2 IMD sing 259 n n N3 C4 IMD sing 260 n y N3 HN3 IMD sing 261 n n C4 C5 IMD doub 262 n y C4 H4 IMD sing 263 n n C5 H5 IMD sing 264 n n # _atom_sites.entry_id 1PEE _atom_sites.fract_transf_matrix[1][1] 0.028835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003864 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 201 HEM HEM . C 3 IMD A 1 202 202 IMD IMD . D 4 HOH A 1 301 301 HOH HOH . D 4 HOH A 2 302 302 HOH HOH . D 4 HOH A 3 308 308 HOH HOH . D 4 HOH A 4 309 309 HOH HOH . D 4 HOH A 5 310 310 HOH HOH . D 4 HOH A 6 311 311 HOH HOH . D 4 HOH A 7 312 312 HOH HOH . D 4 HOH A 8 313 313 HOH HOH . D 4 HOH A 9 314 314 HOH HOH . D 4 HOH A 10 316 316 HOH HOH . D 4 HOH A 11 317 317 HOH HOH . D 4 HOH A 12 318 318 HOH HOH . D 4 HOH A 13 319 319 HOH HOH . D 4 HOH A 14 320 320 HOH HOH . D 4 HOH A 15 321 321 HOH HOH . D 4 HOH A 16 322 322 HOH HOH . D 4 HOH A 17 323 323 HOH HOH . D 4 HOH A 18 324 324 HOH HOH . D 4 HOH A 19 325 325 HOH HOH . D 4 HOH A 20 347 347 HOH HOH . D 4 HOH A 21 348 348 HOH HOH . D 4 HOH A 22 349 349 HOH HOH . D 4 HOH A 23 350 350 HOH HOH . D 4 HOH A 24 351 351 HOH HOH . D 4 HOH A 25 352 352 HOH HOH . D 4 HOH A 26 353 353 HOH HOH . D 4 HOH A 27 354 354 HOH HOH . D 4 HOH A 28 355 355 HOH HOH . D 4 HOH A 29 356 356 HOH HOH . D 4 HOH A 30 357 357 HOH HOH . D 4 HOH A 31 358 358 HOH HOH . D 4 HOH A 32 359 359 HOH HOH . D 4 HOH A 33 360 360 HOH HOH . D 4 HOH A 34 361 361 HOH HOH . D 4 HOH A 35 362 362 HOH HOH . D 4 HOH A 36 363 363 HOH HOH . D 4 HOH A 37 365 365 HOH HOH . D 4 HOH A 38 366 366 HOH HOH . D 4 HOH A 39 367 367 HOH HOH . D 4 HOH A 40 368 368 HOH HOH . D 4 HOH A 41 369 369 HOH HOH . D 4 HOH A 42 370 370 HOH HOH . D 4 HOH A 43 371 371 HOH HOH . D 4 HOH A 44 421 421 HOH HOH . D 4 HOH A 45 422 422 HOH HOH . D 4 HOH A 46 423 423 HOH HOH . D 4 HOH A 47 424 424 HOH HOH . D 4 HOH A 48 425 425 HOH HOH . D 4 HOH A 49 426 426 HOH HOH . D 4 HOH A 50 427 427 HOH HOH . D 4 HOH A 51 428 428 HOH HOH . D 4 HOH A 52 429 429 HOH HOH . D 4 HOH A 53 430 430 HOH HOH . D 4 HOH A 54 431 431 HOH HOH . D 4 HOH A 55 432 432 HOH HOH . D 4 HOH A 56 433 433 HOH HOH . D 4 HOH A 57 434 434 HOH HOH . D 4 HOH A 58 435 435 HOH HOH . D 4 HOH A 59 436 436 HOH HOH . D 4 HOH A 60 437 437 HOH HOH . D 4 HOH A 61 438 438 HOH HOH . D 4 HOH A 62 439 439 HOH HOH . D 4 HOH A 63 440 440 HOH HOH . D 4 HOH A 64 441 441 HOH HOH . D 4 HOH A 65 442 442 HOH HOH . D 4 HOH A 66 443 443 HOH HOH . D 4 HOH A 67 444 444 HOH HOH . D 4 HOH A 68 445 445 HOH HOH . D 4 HOH A 69 446 446 HOH HOH . D 4 HOH A 70 447 447 HOH HOH . D 4 HOH A 71 448 448 HOH HOH . D 4 HOH A 72 449 449 HOH HOH . D 4 HOH A 73 450 450 HOH HOH . D 4 HOH A 74 451 451 HOH HOH . D 4 HOH A 75 452 452 HOH HOH . D 4 HOH A 76 453 453 HOH HOH . D 4 HOH A 77 454 454 HOH HOH . D 4 HOH A 78 455 455 HOH HOH . D 4 HOH A 79 456 456 HOH HOH . D 4 HOH A 80 459 459 HOH HOH . D 4 HOH A 81 460 460 HOH HOH . D 4 HOH A 82 461 461 HOH HOH . D 4 HOH A 83 462 462 HOH HOH . D 4 HOH A 84 463 463 HOH HOH . D 4 HOH A 85 464 464 HOH HOH . D 4 HOH A 86 465 465 HOH HOH . D 4 HOH A 87 466 466 HOH HOH . D 4 HOH A 88 467 467 HOH HOH . D 4 HOH A 89 468 468 HOH HOH . D 4 HOH A 90 470 470 HOH HOH . D 4 HOH A 91 471 471 HOH HOH . D 4 HOH A 92 472 472 HOH HOH . D 4 HOH A 93 475 475 HOH HOH . D 4 HOH A 94 476 476 HOH HOH . D 4 HOH A 95 477 477 HOH HOH . D 4 HOH A 96 478 478 HOH HOH . D 4 HOH A 97 480 480 HOH HOH . D 4 HOH A 98 481 481 HOH HOH . D 4 HOH A 99 482 482 HOH HOH . D 4 HOH A 100 483 483 HOH HOH . D 4 HOH A 101 484 484 HOH HOH . D 4 HOH A 102 485 485 HOH HOH . D 4 HOH A 103 486 486 HOH HOH . D 4 HOH A 104 487 487 HOH HOH . D 4 HOH A 105 488 488 HOH HOH . D 4 HOH A 106 489 489 HOH HOH . D 4 HOH A 107 490 490 HOH HOH . D 4 HOH A 108 491 491 HOH HOH . D 4 HOH A 109 492 492 HOH HOH . D 4 HOH A 110 493 493 HOH HOH . D 4 HOH A 111 494 494 HOH HOH . D 4 HOH A 112 495 495 HOH HOH . D 4 HOH A 113 496 496 HOH HOH . D 4 HOH A 114 497 497 HOH HOH . D 4 HOH A 115 498 498 HOH HOH . D 4 HOH A 116 499 499 HOH HOH . D 4 HOH A 117 500 500 HOH HOH . D 4 HOH A 118 501 501 HOH HOH . D 4 HOH A 119 502 502 HOH HOH . D 4 HOH A 120 503 503 HOH HOH . D 4 HOH A 121 504 504 HOH HOH . D 4 HOH A 122 505 505 HOH HOH . D 4 HOH A 123 506 506 HOH HOH . D 4 HOH A 124 507 507 HOH HOH . D 4 HOH A 125 508 508 HOH HOH . D 4 HOH A 126 509 509 HOH HOH . D 4 HOH A 127 510 510 HOH HOH . D 4 HOH A 128 511 511 HOH HOH . D 4 HOH A 129 512 512 HOH HOH . D 4 HOH A 130 514 514 HOH HOH . D 4 HOH A 131 515 515 HOH HOH . D 4 HOH A 132 516 516 HOH HOH . D 4 HOH A 133 517 517 HOH HOH . D 4 HOH A 134 518 518 HOH HOH . D 4 HOH A 135 519 519 HOH HOH . D 4 HOH A 136 520 520 HOH HOH . D 4 HOH A 137 521 521 HOH HOH . D 4 HOH A 138 522 522 HOH HOH . D 4 HOH A 139 523 523 HOH HOH . D 4 HOH A 140 524 524 HOH HOH . D 4 HOH A 141 525 525 HOH HOH . D 4 HOH A 142 526 526 HOH HOH . D 4 HOH A 143 527 527 HOH HOH . D 4 HOH A 144 528 528 HOH HOH . D 4 HOH A 145 529 529 HOH HOH . D 4 HOH A 146 530 530 HOH HOH . D 4 HOH A 147 531 531 HOH HOH . D 4 HOH A 148 532 532 HOH HOH . D 4 HOH A 149 533 533 HOH HOH . D 4 HOH A 150 534 534 HOH HOH . D 4 HOH A 151 535 535 HOH HOH . D 4 HOH A 152 536 536 HOH HOH . D 4 HOH A 153 537 537 HOH HOH . D 4 HOH A 154 538 538 HOH HOH . D 4 HOH A 155 539 539 HOH HOH . D 4 HOH A 156 540 540 HOH HOH . D 4 HOH A 157 543 543 HOH HOH . D 4 HOH A 158 544 544 HOH HOH . D 4 HOH A 159 545 545 HOH HOH . D 4 HOH A 160 546 546 HOH HOH . D 4 HOH A 161 547 547 HOH HOH . D 4 HOH A 162 548 548 HOH HOH . D 4 HOH A 163 549 549 HOH HOH . D 4 HOH A 164 550 550 HOH HOH . D 4 HOH A 165 551 551 HOH HOH . D 4 HOH A 166 552 552 HOH HOH . D 4 HOH A 167 553 553 HOH HOH . D 4 HOH A 168 554 554 HOH HOH . D 4 HOH A 169 555 555 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . C 3 18.636 15.562 117.167 1 7.45 ? N1 IMD 202 A 1 HETATM 2 C C2 IMD . . . C 3 19.958 15.652 117.39 1 11.61 ? C2 IMD 202 A 1 HETATM 3 N N3 IMD . . . C 3 20.341 16.834 116.896 1 10.33 ? N3 IMD 202 A 1 HETATM 4 C C4 IMD . . . C 3 19.31 17.435 116.31 1 9.49 ? C4 IMD 202 A 1 HETATM 5 C C5 IMD . . . C 3 18.208 16.632 116.498 1 10.45 ? C5 IMD 202 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #