data_1PEG
#
_model_server_result.job_id            CpC6I0OgCjJD4bWQ5wgnFQ 
_model_server_result.datetime_utc      '2024-11-22 10:25:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1peg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":2}' 
#
_entry.id    1PEG 
#
_exptl.entry_id    1PEG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1PEG 
_cell.length_a            68.26 
_cell.length_b            94.17 
_cell.length_c            114.69 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1PEG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I 1 1 
C,D,J,K,L,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E ZN ZN . A ZN 1 1_555 A SG CYS 50 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc2 E ZN ZN . A ZN 1 1_555 A SG CYS 65 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc3 E ZN ZN . A ZN 1 1_555 A SG CYS 112 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc4 E ZN ZN . A ZN 1 1_555 A SG CYS 116 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc5 F ZN ZN . A ZN 2 1_555 A SG CYS 58 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc6 F ZN ZN . A ZN 2 1_555 A SG CYS 112 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc7 F ZN ZN . A ZN 2 1_555 A SG CYS 118 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc8 F ZN ZN . A ZN 2 1_555 A SG CYS 122 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc9 G ZN ZN . A ZN 3 1_555 A SG CYS 50 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc10 G ZN ZN . A ZN 3 1_555 A SG CYS 52 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc11 G ZN ZN . A ZN 3 1_555 A SG CYS 58 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc12 G ZN ZN . A ZN 3 1_555 A SG CYS 63 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc13 H ZN ZN . A ZN 4 1_555 A SG CYS 228 A CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc14 H ZN ZN . A ZN 4 1_555 A SG CYS 290 A CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc15 H ZN ZN . A ZN 4 1_555 A SG CYS 292 A CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc16 H ZN ZN . A ZN 4 1_555 A SG CYS 297 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc17 K ZN ZN . B ZN 6 1_555 C SG CYS 118 B CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc18 M ZN ZN . B ZN 8 1_555 C SG CYS 228 B CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc19 M ZN ZN . B ZN 8 1_555 C SG CYS 290 B CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc20 M ZN ZN . B ZN 8 1_555 C SG CYS 292 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc21 M ZN ZN . B ZN 8 1_555 C SG CYS 297 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 275 n n 
N HN1 SAH sing 276 n n 
N HN2 SAH sing 277 n n 
CA CB SAH sing 278 n n 
CA C SAH sing 279 n n 
CA HA SAH sing 280 n n 
CB CG SAH sing 281 n n 
CB HB1 SAH sing 282 n n 
CB HB2 SAH sing 283 n n 
CG SD SAH sing 284 n n 
CG HG1 SAH sing 285 n n 
CG HG2 SAH sing 286 n n 
SD C5' SAH sing 287 n n 
C O SAH doub 288 n n 
C OXT SAH sing 289 n n 
OXT HXT SAH sing 290 n n 
C5' C4' SAH sing 291 n n 
C5' "H5'1" SAH sing 292 n n 
C5' "H5'2" SAH sing 293 n n 
C4' O4' SAH sing 294 n n 
C4' C3' SAH sing 295 n n 
C4' H4' SAH sing 296 n n 
O4' C1' SAH sing 297 n n 
C3' O3' SAH sing 298 n n 
C3' C2' SAH sing 299 n n 
C3' H3' SAH sing 300 n n 
O3' HO3' SAH sing 301 n n 
C2' O2' SAH sing 302 n n 
C2' C1' SAH sing 303 n n 
C2' H2' SAH sing 304 n n 
O2' HO2' SAH sing 305 n n 
C1' N9 SAH sing 306 n n 
C1' H1' SAH sing 307 n n 
N9 C8 SAH sing 308 n y 
N9 C4 SAH sing 309 n y 
C8 N7 SAH doub 310 n y 
C8 H8 SAH sing 311 n n 
N7 C5 SAH sing 312 n y 
C5 C6 SAH sing 313 n y 
C5 C4 SAH doub 314 n y 
C6 N6 SAH sing 315 n n 
C6 N1 SAH doub 316 n y 
N6 HN61 SAH sing 317 n n 
N6 HN62 SAH sing 318 n n 
N1 C2 SAH sing 319 n y 
C2 N3 SAH doub 320 n y 
C2 H2 SAH sing 321 n n 
N3 C4 SAH sing 322 n y 
#
_atom_sites.entry_id                     1PEG 
_atom_sites.fract_transf_matrix[1][1]    0.01465 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010619 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008719 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ZN A 1 1 1 ZN ZN . 
F 3 ZN A 1 2 2 ZN ZN . 
G 3 ZN A 1 3 3 ZN ZN . 
H 3 ZN A 1 4 4 ZN ZN . 
I 4 SAH A 1 319 1 SAH SAH . 
J 3 ZN B 1 5 5 ZN ZN . 
K 3 ZN B 1 6 6 ZN ZN . 
L 3 ZN B 1 7 7 ZN ZN . 
M 3 ZN B 1 8 8 ZN ZN . 
N 4 SAH B 1 2 2 SAH SAH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . N 4 28.882 -8.881 -26.395 1 26.97 ? N SAH 2 B 1 
HETATM 2 C CA SAH . . . N 4 28.264 -9.508 -25.25 1 22.62 ? CA SAH 2 B 1 
HETATM 3 C CB SAH . . . N 4 29.364 -10.001 -24.327 1 16.56 ? CB SAH 2 B 1 
HETATM 4 C CG SAH . . . N 4 30.009 -11.262 -24.796 1 18 ? CG SAH 2 B 1 
HETATM 5 S SD SAH . . . N 4 29.974 -12.613 -23.585 1 27.63 ? SD SAH 2 B 1 
HETATM 6 C C SAH . . . N 4 27.318 -8.592 -24.482 1 27.89 ? C SAH 2 B 1 
HETATM 7 O O SAH . . . N 4 26.977 -8.884 -23.247 1 33.27 ? O SAH 2 B 1 
HETATM 8 O OXT SAH . . . N 4 26.806 -7.57 -25.116 1 36.21 ? OXT SAH 2 B 1 
HETATM 9 C C5' SAH . . . N 4 29.533 -14.059 -24.606 1 28.75 ? C5' SAH 2 B 1 
HETATM 10 C C4' SAH . . . N 4 28.415 -13.946 -25.617 1 40.7 ? C4' SAH 2 B 1 
HETATM 11 O O4' SAH . . . N 4 28.693 -12.83 -26.504 1 41.89 ? O4' SAH 2 B 1 
HETATM 12 C C3' SAH . . . N 4 28.256 -15.146 -26.541 1 45.22 ? C3' SAH 2 B 1 
HETATM 13 O O3' SAH . . . N 4 27.435 -16.163 -25.975 1 52.29 ? O3' SAH 2 B 1 
HETATM 14 C C2' SAH . . . N 4 27.619 -14.525 -27.775 1 46.91 ? C2' SAH 2 B 1 
HETATM 15 O O2' SAH . . . N 4 26.225 -14.321 -27.633 1 56.16 ? O2' SAH 2 B 1 
HETATM 16 C C1' SAH . . . N 4 28.349 -13.178 -27.837 1 46.05 ? C1' SAH 2 B 1 
HETATM 17 N N9 SAH . . . N 4 29.588 -13.231 -28.619 1 37.16 ? N9 SAH 2 B 1 
HETATM 18 C C8 SAH . . . N 4 30.83 -12.765 -28.252 1 29.06 ? C8 SAH 2 B 1 
HETATM 19 N N7 SAH . . . N 4 31.758 -12.973 -29.15 1 29.52 ? N7 SAH 2 B 1 
HETATM 20 C C5 SAH . . . N 4 31.083 -13.615 -30.185 1 36.41 ? C5 SAH 2 B 1 
HETATM 21 C C6 SAH . . . N 4 31.508 -14.113 -31.431 1 33.09 ? C6 SAH 2 B 1 
HETATM 22 N N6 SAH . . . N 4 32.767 -14.048 -31.869 1 40.58 ? N6 SAH 2 B 1 
HETATM 23 N N1 SAH . . . N 4 30.585 -14.696 -32.221 1 33.03 ? N1 SAH 2 B 1 
HETATM 24 C C2 SAH . . . N 4 29.326 -14.77 -31.787 1 25.77 ? C2 SAH 2 B 1 
HETATM 25 N N3 SAH . . . N 4 28.804 -14.346 -30.643 1 32.71 ? N3 SAH 2 B 1 
HETATM 26 C C4 SAH . . . N 4 29.747 -13.77 -29.875 1 34.08 ? C4 SAH 2 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           442 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           26 
#