data_1PEG # _model_server_result.job_id rB1ykH_bQ2mCa2OWgRFFTw _model_server_result.datetime_utc '2024-11-22 10:39:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1peg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":319}' # _entry.id 1PEG # _exptl.entry_id 1PEG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PEG _cell.length_a 68.26 _cell.length_b 94.17 _cell.length_c 114.69 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PEG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I 1 1 C,D,J,K,L,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E ZN ZN . A ZN 1 1_555 A SG CYS 50 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 E ZN ZN . A ZN 1 1_555 A SG CYS 65 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc3 E ZN ZN . A ZN 1 1_555 A SG CYS 112 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc4 E ZN ZN . A ZN 1 1_555 A SG CYS 116 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 F ZN ZN . A ZN 2 1_555 A SG CYS 58 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc6 F ZN ZN . A ZN 2 1_555 A SG CYS 112 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc7 F ZN ZN . A ZN 2 1_555 A SG CYS 118 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc8 F ZN ZN . A ZN 2 1_555 A SG CYS 122 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc9 G ZN ZN . A ZN 3 1_555 A SG CYS 50 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc10 G ZN ZN . A ZN 3 1_555 A SG CYS 52 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc11 G ZN ZN . A ZN 3 1_555 A SG CYS 58 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc12 G ZN ZN . A ZN 3 1_555 A SG CYS 63 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc13 H ZN ZN . A ZN 4 1_555 A SG CYS 228 A CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc14 H ZN ZN . A ZN 4 1_555 A SG CYS 290 A CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc15 H ZN ZN . A ZN 4 1_555 A SG CYS 292 A CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc16 H ZN ZN . A ZN 4 1_555 A SG CYS 297 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc17 K ZN ZN . B ZN 6 1_555 C SG CYS 118 B CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc18 M ZN ZN . B ZN 8 1_555 C SG CYS 228 B CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc19 M ZN ZN . B ZN 8 1_555 C SG CYS 290 B CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc20 M ZN ZN . B ZN 8 1_555 C SG CYS 292 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc21 M ZN ZN . B ZN 8 1_555 C SG CYS 297 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 275 n n N HN1 SAH sing 276 n n N HN2 SAH sing 277 n n CA CB SAH sing 278 n n CA C SAH sing 279 n n CA HA SAH sing 280 n n CB CG SAH sing 281 n n CB HB1 SAH sing 282 n n CB HB2 SAH sing 283 n n CG SD SAH sing 284 n n CG HG1 SAH sing 285 n n CG HG2 SAH sing 286 n n SD C5' SAH sing 287 n n C O SAH doub 288 n n C OXT SAH sing 289 n n OXT HXT SAH sing 290 n n C5' C4' SAH sing 291 n n C5' "H5'1" SAH sing 292 n n C5' "H5'2" SAH sing 293 n n C4' O4' SAH sing 294 n n C4' C3' SAH sing 295 n n C4' H4' SAH sing 296 n n O4' C1' SAH sing 297 n n C3' O3' SAH sing 298 n n C3' C2' SAH sing 299 n n C3' H3' SAH sing 300 n n O3' HO3' SAH sing 301 n n C2' O2' SAH sing 302 n n C2' C1' SAH sing 303 n n C2' H2' SAH sing 304 n n O2' HO2' SAH sing 305 n n C1' N9 SAH sing 306 n n C1' H1' SAH sing 307 n n N9 C8 SAH sing 308 n y N9 C4 SAH sing 309 n y C8 N7 SAH doub 310 n y C8 H8 SAH sing 311 n n N7 C5 SAH sing 312 n y C5 C6 SAH sing 313 n y C5 C4 SAH doub 314 n y C6 N6 SAH sing 315 n n C6 N1 SAH doub 316 n y N6 HN61 SAH sing 317 n n N6 HN62 SAH sing 318 n n N1 C2 SAH sing 319 n y C2 N3 SAH doub 320 n y C2 H2 SAH sing 321 n n N3 C4 SAH sing 322 n y # _atom_sites.entry_id 1PEG _atom_sites.fract_transf_matrix[1][1] 0.01465 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 1 1 ZN ZN . F 3 ZN A 1 2 2 ZN ZN . G 3 ZN A 1 3 3 ZN ZN . H 3 ZN A 1 4 4 ZN ZN . I 4 SAH A 1 319 1 SAH SAH . J 3 ZN B 1 5 5 ZN ZN . K 3 ZN B 1 6 6 ZN ZN . L 3 ZN B 1 7 7 ZN ZN . M 3 ZN B 1 8 8 ZN ZN . N 4 SAH B 1 2 2 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . I 4 22.935 11.579 -4.694 1 69.02 ? N SAH 319 A 1 HETATM 2 C CA SAH . . . I 4 24.372 11.488 -4.884 1 72.64 ? CA SAH 319 A 1 HETATM 3 C CB SAH . . . I 4 25.006 11.08 -3.555 1 64.54 ? CB SAH 319 A 1 HETATM 4 C CG SAH . . . I 4 25.103 12.213 -2.56 1 59.82 ? CG SAH 319 A 1 HETATM 5 S SD SAH . . . I 4 26.773 12.602 -1.949 1 58.05 ? SD SAH 319 A 1 HETATM 6 C C SAH . . . I 4 24.798 10.52 -5.987 1 76.85 ? C SAH 319 A 1 HETATM 7 O O SAH . . . I 4 26.032 10.086 -6.04 1 84.32 ? O SAH 319 A 1 HETATM 8 O OXT SAH . . . I 4 23.94 10.224 -6.927 1 79.55 ? OXT SAH 319 A 1 HETATM 9 C C5' SAH . . . I 4 26.878 14.381 -1.999 1 55.27 ? C5' SAH 319 A 1 HETATM 10 C C4' SAH . . . I 4 26.379 15.117 -3.22 1 63.89 ? C4' SAH 319 A 1 HETATM 11 O O4' SAH . . . I 4 24.999 14.734 -3.488 1 61.47 ? O4' SAH 319 A 1 HETATM 12 C C3' SAH . . . I 4 26.329 16.628 -3.061 1 64.51 ? C3' SAH 319 A 1 HETATM 13 O O3' SAH . . . I 4 27.582 17.229 -3.366 1 60.63 ? O3' SAH 319 A 1 HETATM 14 C C2' SAH . . . I 4 25.242 17.021 -4.051 1 66.08 ? C2' SAH 319 A 1 HETATM 15 O O2' SAH . . . I 4 25.7 17.043 -5.392 1 69.35 ? O2' SAH 319 A 1 HETATM 16 C C1' SAH . . . I 4 24.243 15.872 -3.866 1 62 ? C1' SAH 319 A 1 HETATM 17 N N9 SAH . . . I 4 23.257 16.129 -2.81 1 65.85 ? N9 SAH 319 A 1 HETATM 18 C C8 SAH . . . I 4 22.896 15.292 -1.781 1 67.02 ? C8 SAH 319 A 1 HETATM 19 N N7 SAH . . . I 4 22.004 15.803 -0.973 1 65.77 ? N7 SAH 319 A 1 HETATM 20 C C5 SAH . . . I 4 21.749 17.058 -1.505 1 65.1 ? C5 SAH 319 A 1 HETATM 21 C C6 SAH . . . I 4 20.896 18.098 -1.106 1 68.74 ? C6 SAH 319 A 1 HETATM 22 N N6 SAH . . . I 4 20.104 18.042 -0.034 1 74.74 ? N6 SAH 319 A 1 HETATM 23 N N1 SAH . . . I 4 20.875 19.215 -1.858 1 65.64 ? N1 SAH 319 A 1 HETATM 24 C C2 SAH . . . I 4 21.662 19.275 -2.93 1 69.55 ? C2 SAH 319 A 1 HETATM 25 N N3 SAH . . . I 4 22.507 18.369 -3.407 1 73.9 ? N3 SAH 319 A 1 HETATM 26 C C4 SAH . . . I 4 22.507 17.269 -2.637 1 66.23 ? C4 SAH 319 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #