data_1PEU # _model_server_result.job_id -4ZE0ns_QtS8HQ_LlOnWjQ _model_server_result.datetime_utc '2025-03-03 04:17:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1peu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":716}' # _entry.id 1PEU # _exptl.entry_id 1PEU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.182 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PEU _cell.length_a 98.99 _cell.length_b 98.99 _cell.length_c 291.488 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 98.99 98.99 145.744 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 178 A CYS 178 1_555 A SG CYS 415 A CYS 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc1 B MG MG . A MG 715 1_555 C O3G DTP . A DTP 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 B MG MG . A MG 715 1_555 C O1B DTP . A DTP 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc3 B MG MG . A MG 715 1_555 C O2A DTP . A DTP 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id DTP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DTP doub 83 n n PG O2G DTP sing 84 n n PG O3G DTP sing 85 n n PG O3B DTP sing 86 n n O2G HOG2 DTP sing 87 n n O3G HOG3 DTP sing 88 n n PB O1B DTP doub 89 n n PB O2B DTP sing 90 n n PB O3B DTP sing 91 n n PB O3A DTP sing 92 n n O2B HOB2 DTP sing 93 n n PA O1A DTP doub 94 n n PA O2A DTP sing 95 n n PA O3A DTP sing 96 n n PA O5' DTP sing 97 n n O2A HOA2 DTP sing 98 n n O5' C5' DTP sing 99 n n C5' C4' DTP sing 100 n n C5' "H5'1" DTP sing 101 n n C5' "H5'2" DTP sing 102 n n C4' O4' DTP sing 103 n n C4' C3' DTP sing 104 n n C4' H4' DTP sing 105 n n O4' C1' DTP sing 106 n n C3' O3' DTP sing 107 n n C3' C2' DTP sing 108 n n C3' H3' DTP sing 109 n n O3' HO3' DTP sing 110 n n C2' C1' DTP sing 111 n n C2' "H2'1" DTP sing 112 n n C2' "H2'2" DTP sing 113 n n C1' N9 DTP sing 114 n n C1' H1' DTP sing 115 n n N9 C8 DTP sing 116 n y N9 C4 DTP sing 117 n y C8 N7 DTP doub 118 n y C8 H8 DTP sing 119 n n N7 C5 DTP sing 120 n y C5 C6 DTP sing 121 n y C5 C4 DTP doub 122 n y C6 N6 DTP sing 123 n n C6 N1 DTP doub 124 n y N6 HN61 DTP sing 125 n n N6 HN62 DTP sing 126 n n N1 C2 DTP sing 127 n y C2 N3 DTP doub 128 n y C2 H2 DTP sing 129 n n N3 C4 DTP sing 130 n y # _atom_sites.entry_id 1PEU _atom_sites.fract_transf_matrix[1][1] 0.010102 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003431 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 715 701 MG MG . C 3 DTP A 1 716 700 DTP DTP . D 4 HOH A 1 717 702 HOH HOH . D 4 HOH A 2 718 703 HOH HOH . D 4 HOH A 3 719 704 HOH HOH . D 4 HOH A 4 720 705 HOH HOH . D 4 HOH A 5 721 706 HOH HOH . D 4 HOH A 6 722 707 HOH HOH . D 4 HOH A 7 723 708 HOH HOH . D 4 HOH A 8 724 709 HOH HOH . D 4 HOH A 9 725 710 HOH HOH . D 4 HOH A 10 726 711 HOH HOH . D 4 HOH A 11 727 712 HOH HOH . D 4 HOH A 12 728 713 HOH HOH . D 4 HOH A 13 729 714 HOH HOH . D 4 HOH A 14 730 715 HOH HOH . D 4 HOH A 15 731 716 HOH HOH . D 4 HOH A 16 732 717 HOH HOH . D 4 HOH A 17 733 718 HOH HOH . D 4 HOH A 18 734 719 HOH HOH . D 4 HOH A 19 735 720 HOH HOH . D 4 HOH A 20 736 721 HOH HOH . D 4 HOH A 21 737 722 HOH HOH . D 4 HOH A 22 738 723 HOH HOH . D 4 HOH A 23 739 724 HOH HOH . D 4 HOH A 24 740 725 HOH HOH . D 4 HOH A 25 741 726 HOH HOH . D 4 HOH A 26 742 727 HOH HOH . D 4 HOH A 27 743 728 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DTP . . . C 3 31.204 41.488 79.04 1 34.57 ? PG DTP 716 A 1 HETATM 2 O O1G DTP . . . C 3 31.437 40.299 79.949 1 33.27 ? O1G DTP 716 A 1 HETATM 3 O O2G DTP . . . C 3 29.734 41.821 78.913 1 34.04 ? O2G DTP 716 A 1 HETATM 4 O O3G DTP . . . C 3 31.738 41.274 77.654 1 31.65 ? O3G DTP 716 A 1 HETATM 5 P PB DTP . . . C 3 33.266 43.093 79.44 1 34.21 ? PB DTP 716 A 1 HETATM 6 O O1B DTP . . . C 3 34.187 41.969 79.029 1 32.7 ? O1B DTP 716 A 1 HETATM 7 O O2B DTP . . . C 3 33.674 43.649 80.781 1 36.29 ? O2B DTP 716 A 1 HETATM 8 O O3B DTP . . . C 3 31.851 42.683 79.665 1 34.34 ? O3B DTP 716 A 1 HETATM 9 P PA DTP . . . C 3 34.209 44.742 77.413 1 31.82 ? PA DTP 716 A 1 HETATM 10 O O1A DTP . . . C 3 35.446 45.259 78.114 1 30.09 ? O1A DTP 716 A 1 HETATM 11 O O2A DTP . . . C 3 34.569 43.662 76.429 1 29.16 ? O2A DTP 716 A 1 HETATM 12 O O3A DTP . . . C 3 33.191 44.219 78.428 1 33.56 ? O3A DTP 716 A 1 HETATM 13 O O5' DTP . . . C 3 33.402 45.798 76.703 1 28.15 ? O5' DTP 716 A 1 HETATM 14 C C5' DTP . . . C 3 32.408 45.203 75.886 1 26.79 ? C5' DTP 716 A 1 HETATM 15 C C4' DTP . . . C 3 31.382 46.181 75.395 1 25.07 ? C4' DTP 716 A 1 HETATM 16 O O4' DTP . . . C 3 30.861 46.849 76.519 1 22.81 ? O4' DTP 716 A 1 HETATM 17 C C3' DTP . . . C 3 31.93 47.298 74.534 1 26.18 ? C3' DTP 716 A 1 HETATM 18 O O3' DTP . . . C 3 31.026 47.44 73.451 1 26.14 ? O3' DTP 716 A 1 HETATM 19 C C2' DTP . . . C 3 31.897 48.557 75.4 1 24.42 ? C2' DTP 716 A 1 HETATM 20 C C1' DTP . . . C 3 30.855 48.257 76.463 1 23.01 ? C1' DTP 716 A 1 HETATM 21 N N9 DTP . . . C 3 31.324 48.57 77.803 1 0 ? N9 DTP 716 A 1 HETATM 22 C C8 DTP . . . C 3 31.987 47.636 78.495 1 24.52 ? C8 DTP 716 A 1 HETATM 23 N N7 DTP . . . C 3 32.342 48.083 79.727 1 23.54 ? N7 DTP 716 A 1 HETATM 24 C C5 DTP . . . C 3 31.909 49.298 79.801 1 21.23 ? C5 DTP 716 A 1 HETATM 25 C C6 DTP . . . C 3 32.016 50.209 80.867 1 22.82 ? C6 DTP 716 A 1 HETATM 26 N N6 DTP . . . C 3 32.609 49.878 81.922 1 24.64 ? N6 DTP 716 A 1 HETATM 27 N N1 DTP . . . C 3 31.475 51.42 80.696 1 24.63 ? N1 DTP 716 A 1 HETATM 28 C C2 DTP . . . C 3 30.835 51.822 79.524 1 24.18 ? C2 DTP 716 A 1 HETATM 29 N N3 DTP . . . C 3 30.739 50.932 78.514 1 22.45 ? N3 DTP 716 A 1 HETATM 30 C C4 DTP . . . C 3 31.232 49.668 78.565 1 22.77 ? C4 DTP 716 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #