data_1PEW # _model_server_result.job_id llDxhhSuvpzFkLoxAsOS2w _model_server_result.datetime_utc '2025-01-02 23:15:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":904}' # _entry.id 1PEW # _exptl.entry_id 1PEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PEW _cell.length_a 73.577 _cell.length_b 73.577 _cell.length_c 92.298 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PEW _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA,PQS tetrameric 4 software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 B,D,E,F,H 3 1,3 A,C,G 3 4,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 0 0 -92.298 3 'crystal symmetry operation' 6_524 x,-y-3,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 -220.731 -46.149 4 'crystal symmetry operation' 2_525 -x,-y-3,z+1/2 -1 0 0 0 -1 0 0 0 1 0 -220.731 46.149 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 23 1_555 A SG CYS 89 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 B SG CYS 22 B CYS 23 1_555 B SG CYS 89 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A NE2 HIS 8 A HIS 8 5_554 F CD CD . B CD 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc2 A OE2 GLU 49 A GLU 50 3_435 E CD CD . B CD 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc3 A OE1 GLU 49 A GLU 50 3_435 E CD CD . B CD 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc4 A OD1 ASP 59 A ASP 60 3_435 D CD CD . B CD 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc5 A OD1 ASP 86 A ASP 85 1_555 C CD CD . A CD 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc6 A OD2 ASP 86 A ASP 85 1_555 C CD CD . A CD 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc7 C CD CD . A CD 901 1_555 G O HOH . A HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc8 C CD CD . A CD 901 1_555 G O HOH . A HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc9 C CD CD . A CD 901 1_555 G O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc10 G O HOH . A HOH 902 5_554 F CD CD . B CD 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc11 B N SER 41 B SER 42 5_554 F CD CD . B CD 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc12 B OE1 GLU 49 B GLU 50 1_555 D CD CD . B CD 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc13 B OE2 GLU 49 B GLU 50 1_555 D CD CD . B CD 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc14 B OD1 ASP 59 B ASP 60 1_555 E CD CD . B CD 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc15 B OD2 ASP 59 B ASP 60 1_555 E CD CD . B CD 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.054 ? metalc ? metalc16 B OD1 ASP 86 B ASP 85 1_555 F CD CD . B CD 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc17 B OD2 ASP 86 B ASP 85 1_555 F CD CD . B CD 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc18 D CD CD . B CD 902 1_555 H O HOH . B HOH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc19 D CD CD . B CD 902 1_555 H O HOH . B HOH 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc20 D CD CD . B CD 902 1_555 H O HOH . B HOH 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc21 E CD CD . B CD 903 1_555 H O HOH . B HOH 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? metalc ? metalc22 E CD CD . B CD 903 1_555 H O HOH . B HOH 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc23 E CD CD . B CD 903 1_555 H O HOH . B HOH 938 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc24 E CD CD . B CD 903 1_555 H O HOH . B HOH 941 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1PEW _atom_sites.fract_transf_matrix[1][1] 0.013591 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010834 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 901 901 CD CD . D 2 CD B 1 902 902 CD CD . E 2 CD B 1 903 903 CD CD . F 2 CD B 1 904 904 CD CD . G 3 HOH A 1 902 2 HOH HOH . G 3 HOH A 2 903 3 HOH HOH . G 3 HOH A 3 904 4 HOH HOH . G 3 HOH A 4 905 5 HOH HOH . G 3 HOH A 5 906 7 HOH HOH . G 3 HOH A 6 907 9 HOH HOH . G 3 HOH A 7 908 13 HOH HOH . G 3 HOH A 8 909 14 HOH HOH . G 3 HOH A 9 910 17 HOH HOH . G 3 HOH A 10 911 18 HOH HOH . G 3 HOH A 11 912 19 HOH HOH . G 3 HOH A 12 913 21 HOH HOH . G 3 HOH A 13 914 25 HOH HOH . G 3 HOH A 14 915 28 HOH HOH . G 3 HOH A 15 916 29 HOH HOH . G 3 HOH A 16 917 30 HOH HOH . G 3 HOH A 17 918 33 HOH HOH . G 3 HOH A 18 919 36 HOH HOH . G 3 HOH A 19 920 37 HOH HOH . G 3 HOH A 20 921 38 HOH HOH . G 3 HOH A 21 922 39 HOH HOH . G 3 HOH A 22 923 40 HOH HOH . G 3 HOH A 23 924 41 HOH HOH . G 3 HOH A 24 925 45 HOH HOH . G 3 HOH A 25 926 47 HOH HOH . G 3 HOH A 26 927 48 HOH HOH . G 3 HOH A 27 928 52 HOH HOH . G 3 HOH A 28 929 58 HOH HOH . G 3 HOH A 29 930 59 HOH HOH . G 3 HOH A 30 931 60 HOH HOH . G 3 HOH A 31 932 68 HOH HOH . G 3 HOH A 32 933 69 HOH HOH . G 3 HOH A 33 934 70 HOH HOH . G 3 HOH A 34 935 71 HOH HOH . G 3 HOH A 35 936 74 HOH HOH . G 3 HOH A 36 937 75 HOH HOH . G 3 HOH A 37 938 77 HOH HOH . G 3 HOH A 38 939 78 HOH HOH . G 3 HOH A 39 940 81 HOH HOH . G 3 HOH A 40 941 83 HOH HOH . G 3 HOH A 41 942 89 HOH HOH . G 3 HOH A 42 943 90 HOH HOH . G 3 HOH A 43 944 93 HOH HOH . G 3 HOH A 44 945 95 HOH HOH . G 3 HOH A 45 946 97 HOH HOH . G 3 HOH A 46 947 99 HOH HOH . G 3 HOH A 47 948 100 HOH HOH . G 3 HOH A 48 949 102 HOH HOH . G 3 HOH A 49 950 104 HOH HOH . H 3 HOH B 1 905 8 HOH HOH . H 3 HOH B 2 906 10 HOH HOH . H 3 HOH B 3 907 11 HOH HOH . H 3 HOH B 4 908 12 HOH HOH . H 3 HOH B 5 909 15 HOH HOH . H 3 HOH B 6 910 16 HOH HOH . H 3 HOH B 7 911 20 HOH HOH . H 3 HOH B 8 912 22 HOH HOH . H 3 HOH B 9 913 24 HOH HOH . H 3 HOH B 10 914 26 HOH HOH . H 3 HOH B 11 915 27 HOH HOH . H 3 HOH B 12 916 32 HOH HOH . H 3 HOH B 13 917 34 HOH HOH . H 3 HOH B 14 918 35 HOH HOH . H 3 HOH B 15 919 42 HOH HOH . H 3 HOH B 16 920 43 HOH HOH . H 3 HOH B 17 921 44 HOH HOH . H 3 HOH B 18 922 46 HOH HOH . H 3 HOH B 19 923 49 HOH HOH . H 3 HOH B 20 924 50 HOH HOH . H 3 HOH B 21 925 51 HOH HOH . H 3 HOH B 22 926 53 HOH HOH . H 3 HOH B 23 927 54 HOH HOH . H 3 HOH B 24 928 55 HOH HOH . H 3 HOH B 25 929 56 HOH HOH . H 3 HOH B 26 930 57 HOH HOH . H 3 HOH B 27 931 61 HOH HOH . H 3 HOH B 28 932 62 HOH HOH . H 3 HOH B 29 933 63 HOH HOH . H 3 HOH B 30 934 64 HOH HOH . H 3 HOH B 31 935 65 HOH HOH . H 3 HOH B 32 936 66 HOH HOH . H 3 HOH B 33 937 67 HOH HOH . H 3 HOH B 34 938 72 HOH HOH . H 3 HOH B 35 939 73 HOH HOH . H 3 HOH B 36 940 76 HOH HOH . H 3 HOH B 37 941 79 HOH HOH . H 3 HOH B 38 942 80 HOH HOH . H 3 HOH B 39 943 82 HOH HOH . H 3 HOH B 40 944 84 HOH HOH . H 3 HOH B 41 945 85 HOH HOH . H 3 HOH B 42 946 86 HOH HOH . H 3 HOH B 43 947 87 HOH HOH . H 3 HOH B 44 948 88 HOH HOH . H 3 HOH B 45 949 91 HOH HOH . H 3 HOH B 46 950 92 HOH HOH . H 3 HOH B 47 951 94 HOH HOH . H 3 HOH B 48 952 96 HOH HOH . H 3 HOH B 49 953 98 HOH HOH . H 3 HOH B 50 954 101 HOH HOH . H 3 HOH B 51 955 103 HOH HOH . H 3 HOH B 52 956 105 HOH HOH . H 3 HOH B 53 957 106 HOH HOH . H 3 HOH B 54 958 107 HOH HOH . H 3 HOH B 55 959 108 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.268 _atom_site.Cartn_y -106.635 _atom_site.Cartn_z -40.443 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 904 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 120 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 521 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #