data_1PF8 # _model_server_result.job_id CjN68db8heRhO8fWYZBBCw _model_server_result.datetime_utc '2025-03-14 01:53:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pf8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1PF8 # _exptl.entry_id 1PF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.245 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3Z)-3-(1H-IMIDAZOL-5-YLMETHYLENE)-5-METHOXY-1H-INDOL-2(3H)-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PF8 _cell.length_a 53.753 _cell.length_b 72.306 _cell.length_c 71.944 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H11 N3 O2' _chem_comp.formula_weight 241.245 _chem_comp.id SU9 _chem_comp.mon_nstd_flag . _chem_comp.name (3Z)-3-(1H-IMIDAZOL-5-YLMETHYLENE)-5-METHOXY-1H-INDOL-2(3H)-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SU9516 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5' C4' SU9 sing 288 n y N5' C1' SU9 sing 289 n y N5' H5' SU9 sing 290 n n C4' N3' SU9 doub 291 n y C4' H4' SU9 sing 292 n n N3' C2' SU9 sing 293 n y C2' C1' SU9 doub 294 n y C2' H2' SU9 sing 295 n n C1' C6' SU9 sing 296 n n C6' C9 SU9 doub 297 z n C6' H6' SU9 sing 298 n n C9 C8 SU9 sing 299 n n C9 C4 SU9 sing 300 n n C8 O10 SU9 doub 301 n n C8 N7 SU9 sing 302 n n N7 C5 SU9 sing 303 n n N7 HN7 SU9 sing 304 n n C5 C6 SU9 doub 305 n y C5 C4 SU9 sing 306 n y C6 C1 SU9 sing 307 n y C6 H6 SU9 sing 308 n n C1 C2 SU9 doub 309 n y C1 H1 SU9 sing 310 n n C2 O11 SU9 sing 311 n n C2 C3 SU9 sing 312 n y O11 C12 SU9 sing 313 n n C12 H121 SU9 sing 314 n n C12 H122 SU9 sing 315 n n C12 H123 SU9 sing 316 n n C3 C4 SU9 doub 317 n y C3 H3 SU9 sing 318 n n # _atom_sites.entry_id 1PF8 _atom_sites.fract_transf_matrix[1][1] 0.018604 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01383 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0139 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id SU9 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 500 _pdbx_nonpoly_scheme.auth_seq_num 500 _pdbx_nonpoly_scheme.pdb_mon_id SU9 _pdbx_nonpoly_scheme.auth_mon_id SU _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N5' SU9 . . . B 2 3.901 30.318 7.215 1 12.58 ? N5' SU9 500 A 1 HETATM 2 C C4' SU9 . . . B 2 5.056 29.693 6.641 1 15.96 ? C4' SU9 500 A 1 HETATM 3 N N3' SU9 . . . B 2 5.17 28.299 7.269 1 19.46 ? N3' SU9 500 A 1 HETATM 4 C C2' SU9 . . . B 2 4.116 28.241 8.388 1 19.96 ? C2' SU9 500 A 1 HETATM 5 C C1' SU9 . . . B 2 3.229 29.465 8.189 1 19.02 ? C1' SU9 500 A 1 HETATM 6 C C6' SU9 . . . B 2 2.311 29.69 8.85 1 25.29 ? C6' SU9 500 A 1 HETATM 7 C C9 SU9 . . . B 2 1.505 30.855 8.634 1 30.83 ? C9 SU9 500 A 1 HETATM 8 C C8 SU9 . . . B 2 1.62 31.983 7.753 1 30.07 ? C8 SU9 500 A 1 HETATM 9 O O10 SU9 . . . B 2 2.497 32.16 6.941 1 29.5 ? O10 SU9 500 A 1 HETATM 10 N N7 SU9 . . . B 2 0.667 32.876 7.881 1 29.69 ? N7 SU9 500 A 1 HETATM 11 C C5 SU9 . . . B 2 -0.154 32.389 8.888 1 30.94 ? C5 SU9 500 A 1 HETATM 12 C C6 SU9 . . . B 2 -1.35 32.957 9.455 1 28.48 ? C6 SU9 500 A 1 HETATM 13 C C1 SU9 . . . B 2 -2.013 32.265 10.496 1 30.28 ? C1 SU9 500 A 1 HETATM 14 C C2 SU9 . . . B 2 -1.56 31.062 10.995 1 35.8 ? C2 SU9 500 A 1 HETATM 15 O O11 SU9 . . . B 2 -2.15 30.434 11.936 1 38.16 ? O11 SU9 500 A 1 HETATM 16 C C12 SU9 . . . B 2 -1.777 29.365 12.406 1 35.08 ? C12 SU9 500 A 1 HETATM 17 C C3 SU9 . . . B 2 -0.242 30.402 10.391 1 35.18 ? C3 SU9 500 A 1 HETATM 18 C C4 SU9 . . . B 2 0.326 31.169 9.371 1 32.41 ? C4 SU9 500 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #