data_1PF9 # _model_server_result.job_id xxAQmEFoQTMIJWOtkOgW9g _model_server_result.datetime_utc '2024-12-26 03:16:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pf9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":603}' # _entry.id 1PF9 # _exptl.entry_id 1PF9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PF9 _cell.length_a 255.26 _cell.length_b 265.25 _cell.length_c 184.4 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PF9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 21-meric _pdbx_struct_assembly.oligomeric_count 21 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 V N N ? 3 X N N ? 3 Z N N ? 3 BA N N ? 3 DA N N ? 3 FA N N ? 3 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 86 A ASP 87 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc2 V MG MG . A MG 601 1_555 W O1B ADP . A ADP 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc3 V MG MG . A MG 601 1_555 W O2A ADP . A ADP 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc4 B OD1 ASP 86 B ASP 87 1_555 X MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc5 X MG MG . B MG 602 1_555 Y O1B ADP . B ADP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc6 X MG MG . B MG 602 1_555 Y O2A ADP . B ADP 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc7 C OD1 ASP 86 C ASP 87 1_555 Z MG MG . C MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc8 Z MG MG . C MG 603 1_555 AA O2A ADP . C ADP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc9 Z MG MG . C MG 603 1_555 AA O1B ADP . C ADP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc10 D OD1 ASP 86 D ASP 87 1_555 BA MG MG . D MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc11 BA MG MG . D MG 604 1_555 CA O1B ADP . D ADP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc12 BA MG MG . D MG 604 1_555 CA O2A ADP . D ADP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? metalc ? metalc13 E OD1 ASP 86 E ASP 87 1_555 DA MG MG . E MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc14 DA MG MG . E MG 605 1_555 EA O2A ADP . E ADP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc15 DA MG MG . E MG 605 1_555 EA O1B ADP . E ADP 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? metalc ? metalc16 F OD1 ASP 86 F ASP 87 1_555 FA MG MG . F MG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc17 FA MG MG . F MG 606 1_555 GA O1B ADP . F ADP 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc18 FA MG MG . F MG 606 1_555 GA O2A ADP . F ADP 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.675 ? metalc ? metalc19 G OD1 ASP 86 G ASP 87 1_555 HA MG MG . G MG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc20 HA MG MG . G MG 607 1_555 IA O2A ADP . G ADP 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc21 HA MG MG . G MG 607 1_555 IA O1B ADP . G ADP 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1PF9 _atom_sites.fract_transf_matrix[1][1] 0.003918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code V 3 MG A 1 601 601 MG MG . W 4 ADP A 1 700 700 ADP ADP . X 3 MG B 1 602 602 MG MG . Y 4 ADP B 1 701 701 ADP ADP . Z 3 MG C 1 603 603 MG MG . AA 4 ADP C 1 702 702 ADP ADP . BA 3 MG D 1 604 604 MG MG . CA 4 ADP D 1 703 703 ADP ADP . DA 3 MG E 1 605 605 MG MG . EA 4 ADP E 1 704 704 ADP ADP . FA 3 MG F 1 606 606 MG MG . GA 4 ADP F 1 705 705 ADP ADP . HA 3 MG G 1 607 607 MG MG . IA 4 ADP G 1 706 706 ADP ADP . JA 5 HOH A 1 800 800 HOH HOH . KA 5 HOH B 1 801 801 HOH HOH . LA 5 HOH C 1 802 802 HOH HOH . MA 5 HOH D 1 803 803 HOH HOH . NA 5 HOH E 1 804 804 HOH HOH . OA 5 HOH F 1 805 805 HOH HOH . PA 5 HOH G 1 806 806 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Z _atom_site.label_entity_id 3 _atom_site.Cartn_x 80.354 _atom_site.Cartn_y -100.231 _atom_site.Cartn_z -20.434 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 603 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 86 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #