data_1PFB # _model_server_result.job_id R3y7cqSEk6aJAN2hIFNwxQ _model_server_result.datetime_utc '2024-12-27 03:10:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 1PFB # _exptl.entry_id 1PFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PFB _cell.length_a 32.429 _cell.length_b 77.033 _cell.length_c 77.273 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_655 -x+1,-y+1/2,z -1 0 0 0 -1 0 0 0 1 32.429 38.5165 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 7 B ARG 26 1_555 B N M3L 8 B M3L 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 B C M3L 8 B M3L 27 1_555 B N SER 9 B SER 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1PFB _atom_sites.fract_transf_matrix[1][1] 0.030837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 203 103 CL CL1 . D 3 CL A 1 204 104 CL CL1 . E 4 BME A 1 202 102 BME BME . F 5 ACY A 1 201 101 ACY ACY . G 6 HOH A 1 205 1 HOH TIP . G 6 HOH A 2 206 3 HOH TIP . G 6 HOH A 3 207 4 HOH TIP . G 6 HOH A 4 208 5 HOH TIP . G 6 HOH A 5 209 6 HOH TIP . G 6 HOH A 6 210 7 HOH TIP . G 6 HOH A 7 211 8 HOH TIP . G 6 HOH A 8 212 9 HOH TIP . G 6 HOH A 9 213 10 HOH TIP . G 6 HOH A 10 214 11 HOH TIP . G 6 HOH A 11 215 12 HOH TIP . G 6 HOH A 12 216 13 HOH TIP . G 6 HOH A 13 217 14 HOH TIP . G 6 HOH A 14 218 15 HOH TIP . G 6 HOH A 15 219 16 HOH TIP . G 6 HOH A 16 220 17 HOH TIP . G 6 HOH A 17 221 18 HOH TIP . G 6 HOH A 18 222 19 HOH TIP . G 6 HOH A 19 223 20 HOH TIP . G 6 HOH A 20 224 21 HOH TIP . G 6 HOH A 21 225 22 HOH TIP . G 6 HOH A 22 226 23 HOH TIP . G 6 HOH A 23 227 24 HOH TIP . G 6 HOH A 24 228 25 HOH TIP . G 6 HOH A 25 229 26 HOH TIP . G 6 HOH A 26 230 27 HOH TIP . G 6 HOH A 27 231 28 HOH TIP . G 6 HOH A 28 232 29 HOH TIP . G 6 HOH A 29 233 30 HOH TIP . G 6 HOH A 30 234 31 HOH TIP . G 6 HOH A 31 235 32 HOH TIP . G 6 HOH A 32 236 33 HOH TIP . G 6 HOH A 33 237 34 HOH TIP . G 6 HOH A 34 238 35 HOH TIP . G 6 HOH A 35 239 36 HOH TIP . G 6 HOH A 36 240 37 HOH TIP . G 6 HOH A 37 241 38 HOH TIP . G 6 HOH A 38 242 39 HOH TIP . G 6 HOH A 39 243 40 HOH TIP . G 6 HOH A 40 244 41 HOH TIP . G 6 HOH A 41 245 42 HOH TIP . G 6 HOH A 42 246 43 HOH TIP . G 6 HOH A 43 247 44 HOH TIP . G 6 HOH A 44 248 45 HOH TIP . G 6 HOH A 45 249 46 HOH TIP . G 6 HOH A 46 250 47 HOH TIP . G 6 HOH A 47 251 49 HOH TIP . G 6 HOH A 48 252 50 HOH TIP . G 6 HOH A 49 253 51 HOH TIP . G 6 HOH A 50 254 52 HOH TIP . G 6 HOH A 51 255 53 HOH TIP . G 6 HOH A 52 256 54 HOH TIP . G 6 HOH A 53 257 55 HOH TIP . G 6 HOH A 54 258 56 HOH TIP . G 6 HOH A 55 259 57 HOH TIP . G 6 HOH A 56 260 58 HOH TIP . G 6 HOH A 57 261 59 HOH TIP . G 6 HOH A 58 262 60 HOH TIP . G 6 HOH A 59 263 61 HOH TIP . G 6 HOH A 60 264 62 HOH TIP . G 6 HOH A 61 265 63 HOH TIP . G 6 HOH A 62 266 64 HOH TIP . G 6 HOH A 63 267 66 HOH TIP . G 6 HOH A 64 268 67 HOH TIP . G 6 HOH A 65 269 68 HOH TIP . G 6 HOH A 66 270 69 HOH TIP . G 6 HOH A 67 271 70 HOH TIP . G 6 HOH A 68 272 71 HOH TIP . G 6 HOH A 69 273 73 HOH TIP . G 6 HOH A 70 274 74 HOH TIP . G 6 HOH A 71 275 75 HOH TIP . G 6 HOH A 72 276 76 HOH TIP . G 6 HOH A 73 277 77 HOH TIP . G 6 HOH A 74 278 78 HOH TIP . G 6 HOH A 75 279 79 HOH TIP . G 6 HOH A 76 280 80 HOH TIP . G 6 HOH A 77 281 81 HOH TIP . G 6 HOH A 78 282 82 HOH TIP . G 6 HOH A 79 283 83 HOH TIP . G 6 HOH A 80 284 84 HOH TIP . G 6 HOH A 81 285 85 HOH TIP . G 6 HOH A 82 286 86 HOH TIP . G 6 HOH A 83 287 87 HOH TIP . G 6 HOH A 84 288 88 HOH TIP . G 6 HOH A 85 289 89 HOH TIP . G 6 HOH A 86 290 90 HOH TIP . G 6 HOH A 87 291 91 HOH TIP . G 6 HOH A 88 292 92 HOH TIP . G 6 HOH A 89 293 93 HOH TIP . G 6 HOH A 90 294 94 HOH TIP . G 6 HOH A 91 295 95 HOH TIP . G 6 HOH A 92 296 96 HOH TIP . G 6 HOH A 93 297 98 HOH TIP . G 6 HOH A 94 298 99 HOH TIP . G 6 HOH A 95 299 100 HOH TIP . G 6 HOH A 96 300 101 HOH TIP . G 6 HOH A 97 301 102 HOH TIP . G 6 HOH A 98 302 103 HOH TIP . G 6 HOH A 99 303 104 HOH TIP . G 6 HOH A 100 304 105 HOH TIP . G 6 HOH A 101 305 106 HOH TIP . G 6 HOH A 102 306 107 HOH TIP . G 6 HOH A 103 307 109 HOH TIP . G 6 HOH A 104 308 110 HOH TIP . G 6 HOH A 105 309 111 HOH TIP . G 6 HOH A 106 310 112 HOH TIP . G 6 HOH A 107 311 113 HOH TIP . G 6 HOH A 108 312 115 HOH TIP . G 6 HOH A 109 313 116 HOH TIP . G 6 HOH A 110 314 117 HOH TIP . G 6 HOH A 111 315 118 HOH TIP . G 6 HOH A 112 316 119 HOH TIP . G 6 HOH A 113 317 120 HOH TIP . G 6 HOH A 114 318 121 HOH TIP . G 6 HOH A 115 319 122 HOH TIP . G 6 HOH A 116 320 123 HOH TIP . G 6 HOH A 117 321 124 HOH TIP . G 6 HOH A 118 322 125 HOH TIP . G 6 HOH A 119 323 126 HOH TIP . G 6 HOH A 120 324 128 HOH TIP . G 6 HOH A 121 325 129 HOH TIP . G 6 HOH A 122 326 130 HOH TIP . G 6 HOH A 123 327 132 HOH TIP . G 6 HOH A 124 328 133 HOH TIP . G 6 HOH A 125 329 134 HOH TIP . G 6 HOH A 126 330 135 HOH TIP . G 6 HOH A 127 331 136 HOH TIP . G 6 HOH A 128 332 137 HOH TIP . G 6 HOH A 129 333 138 HOH TIP . G 6 HOH A 130 334 139 HOH TIP . G 6 HOH A 131 335 140 HOH TIP . G 6 HOH A 132 336 141 HOH TIP . G 6 HOH A 133 337 142 HOH TIP . G 6 HOH A 134 338 143 HOH TIP . G 6 HOH A 135 339 145 HOH TIP . G 6 HOH A 136 340 146 HOH TIP . G 6 HOH A 137 341 147 HOH TIP . H 6 HOH B 1 2 2 HOH TIP . H 6 HOH B 2 48 48 HOH TIP . H 6 HOH B 3 65 65 HOH TIP . H 6 HOH B 4 72 72 HOH TIP . H 6 HOH B 5 97 97 HOH TIP . H 6 HOH B 6 108 108 HOH TIP . H 6 HOH B 7 114 114 HOH TIP . H 6 HOH B 8 127 127 HOH TIP . H 6 HOH B 9 131 131 HOH TIP . H 6 HOH B 10 144 144 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . E 4 17.643 22.633 37.707 1 46.34 ? C1 BME 202 A 1 HETATM 2 C C2 BME . . . E 4 16.688 23.429 38.587 1 48.16 ? C2 BME 202 A 1 HETATM 3 O O1 BME . . . E 4 18.039 21.512 38.041 1 48.61 ? O1 BME 202 A 1 HETATM 4 S S2 BME . . . E 4 16.141 24.993 37.888 1 49.6 ? S2 BME 202 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #