data_1PGF # _model_server_result.job_id 5NV0_RBQyCC6vbxchIiycg _model_server_result.datetime_utc '2024-11-14 19:23:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pgf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":800}' # _entry.id 1PGF # _exptl.entry_id 1PGF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 449.239 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-(4-IODOBENZOYL)-5-METHOXY-2-METHYL INDOLE-3-ACETIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PGF _cell.length_a 99.22 _cell.length_b 208.99 _cell.length_c 232.43 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PGF _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 L N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 671 NAG 2 n C NAG 2 C 2 NAG A 672 NAG 2 n D NAG 1 D 1 NAG B 671 NAG 2 n D NAG 2 D 2 NAG B 672 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 36 1_555 A SG CYS 23 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 13 A CYS 37 1_555 A SG CYS 135 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 17 A CYS 41 1_555 A SG CYS 33 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf4 A SG CYS 35 A CYS 59 1_555 A SG CYS 45 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 545 A CYS 569 1_555 A SG CYS 551 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf6 B SG CYS 12 B CYS 36 1_555 B SG CYS 23 B CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 13 B CYS 37 1_555 B SG CYS 135 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 B SG CYS 17 B CYS 41 1_555 B SG CYS 33 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf9 B SG CYS 35 B CYS 59 1_555 B SG CYS 45 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 B SG CYS 545 B CYS 569 1_555 B SG CYS 551 B CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 A ND2 ASN 44 A ASN 68 1_555 E C1 NAG . A NAG 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 A ND2 ASN 120 A ASN 144 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 A ND2 ASN 386 A ASN 410 1_555 F C1 NAG . A NAG 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale4 B ND2 ASN 44 B ASN 68 1_555 I C1 NAG . B NAG 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale5 B ND2 ASN 120 B ASN 144 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 B ND2 ASN 386 B ASN 410 1_555 J C1 NAG . B NAG 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? metalc ? metalc1 A NE2 HIS 364 A HIS 388 1_555 G FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc2 B NE2 HIS 364 B HIS 388 1_555 K FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? # _chem_comp.formula 'C19 H16 I N O4' _chem_comp.formula_weight 449.239 _chem_comp.id IMM _chem_comp.mon_nstd_flag . _chem_comp.name '1-(4-IODOBENZOYL)-5-METHOXY-2-METHYL INDOLE-3-ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMM sing 253 n y N1 C9 IMM sing 254 n y N1 C10 IMM sing 255 n n C2 C3 IMM doub 256 n y C2 C17 IMM sing 257 n n C3 C4 IMM sing 258 n y C3 C18 IMM sing 259 n n C4 C5 IMM doub 260 n y C4 C9 IMM sing 261 n y C5 C6 IMM sing 262 n y C5 H5 IMM sing 263 n n C6 C7 IMM doub 264 n y C6 O2 IMM sing 265 n n C7 C8 IMM sing 266 n y C7 H7 IMM sing 267 n n C8 C9 IMM doub 268 n y C8 H8 IMM sing 269 n n C10 C11 IMM sing 270 n n C10 O1 IMM doub 271 n n C11 C12 IMM doub 272 n y C11 C16 IMM sing 273 n y C12 C13 IMM sing 274 n y C12 H12 IMM sing 275 n n C13 C14 IMM doub 276 n y C13 H13 IMM sing 277 n n C14 C15 IMM sing 278 n y C14 I1 IMM sing 279 n n C15 C16 IMM doub 280 n y C15 H15 IMM sing 281 n n C16 H16 IMM sing 282 n n C17 H171 IMM sing 283 n n C17 H172 IMM sing 284 n n C17 H173 IMM sing 285 n n C18 C19 IMM sing 286 n n C18 H181 IMM sing 287 n n C18 H182 IMM sing 288 n n C19 O3 IMM doub 289 n n C19 O4 IMM sing 290 n n C20 O2 IMM sing 291 n n C20 H201 IMM sing 292 n n C20 H202 IMM sing 293 n n C20 H203 IMM sing 294 n n O4 HO4 IMM sing 295 n n # _atom_sites.entry_id 1PGF _atom_sites.fract_transf_matrix[1][1] 0.010079 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004785 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 661 661 NAG NAG . F 3 NAG A 1 681 681 NAG NAG . G 4 HEM A 1 601 601 HEM HEM . H 5 IMM A 1 800 800 IMM IMM . I 3 NAG B 1 661 661 NAG NAG . J 3 NAG B 1 681 681 NAG NAG . K 4 HEM B 1 601 601 HEM HEM . L 5 IMM B 1 800 800 IMM IMM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMM . . . H 5 27.602 34.907 207.574 1 15 ? N1 IMM 800 A 1 HETATM 2 C C2 IMM . . . H 5 28.887 34.362 207.727 1 15 ? C2 IMM 800 A 1 HETATM 3 C C3 IMM . . . H 5 28.846 33.446 208.676 1 15 ? C3 IMM 800 A 1 HETATM 4 C C4 IMM . . . H 5 27.546 33.334 209.163 1 15 ? C4 IMM 800 A 1 HETATM 5 C C5 IMM . . . H 5 27.014 32.551 210.114 1 15 ? C5 IMM 800 A 1 HETATM 6 C C6 IMM . . . H 5 25.752 32.63 210.411 1 15 ? C6 IMM 800 A 1 HETATM 7 C C7 IMM . . . H 5 24.899 33.54 209.751 1 15 ? C7 IMM 800 A 1 HETATM 8 C C8 IMM . . . H 5 25.432 34.35 208.772 1 15 ? C8 IMM 800 A 1 HETATM 9 C C9 IMM . . . H 5 26.753 34.246 208.485 1 15 ? C9 IMM 800 A 1 HETATM 10 C C10 IMM . . . H 5 27.178 35.963 206.804 1 15 ? C10 IMM 800 A 1 HETATM 11 C C11 IMM . . . H 5 26.58 35.751 205.474 1 15 ? C11 IMM 800 A 1 HETATM 12 C C12 IMM . . . H 5 25.366 35.094 205.35 1 15 ? C12 IMM 800 A 1 HETATM 13 C C13 IMM . . . H 5 24.73 35.054 204.123 1 15 ? C13 IMM 800 A 1 HETATM 14 C C14 IMM . . . H 5 25.303 35.674 203.021 1 15 ? C14 IMM 800 A 1 HETATM 15 C C15 IMM . . . H 5 26.539 36.285 203.166 1 15 ? C15 IMM 800 A 1 HETATM 16 C C16 IMM . . . H 5 27.161 36.317 204.37 1 15 ? C16 IMM 800 A 1 HETATM 17 C C17 IMM . . . H 5 30.019 34.61 206.797 1 15 ? C17 IMM 800 A 1 HETATM 18 C C18 IMM . . . H 5 29.998 32.724 209.246 1 15 ? C18 IMM 800 A 1 HETATM 19 C C19 IMM . . . H 5 29.816 32.488 210.732 1 15 ? C19 IMM 800 A 1 HETATM 20 C C20 IMM . . . H 5 26.109 30.764 211.873 1 15 ? C20 IMM 800 A 1 HETATM 21 O O1 IMM . . . H 5 27.309 37.093 207.201 1 15 ? O1 IMM 800 A 1 HETATM 22 O O2 IMM . . . H 5 25.267 31.819 211.401 1 15 ? O2 IMM 800 A 1 HETATM 23 O O3 IMM . . . H 5 29.185 31.441 211.084 1 15 ? O3 IMM 800 A 1 HETATM 24 O O4 IMM . . . H 5 30.089 33.439 211.52 1 15 ? O4 IMM 800 A 1 HETATM 25 I I1 IMM . . . H 5 24.257 35.78 201.173 1 15 ? I1 IMM 800 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 25 #