data_1PHM # _model_server_result.job_id fdA5skSv9V-j6xWg1GrWaQ _model_server_result.datetime_utc '2024-12-01 18:36:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1phm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":362}' # _entry.id 1PHM # _exptl.entry_id 1PHM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PHM _cell.length_a 68.4 _cell.length_b 68.66 _cell.length_c 81.38 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PHM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 47 1_555 A SG CYS 142 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 37 A CYS 81 1_555 A SG CYS 82 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 70 A CYS 114 1_555 A SG CYS 87 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 183 A CYS 227 1_555 A SG CYS 290 A CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 A SG CYS 249 A CYS 293 1_555 A SG CYS 271 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc1 A ND1 HIS 63 A HIS 107 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc2 A ND1 HIS 64 A HIS 108 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc3 A ND1 HIS 128 A HIS 172 1_555 B CU CU . A CU 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc4 A NE2 HIS 191 A HIS 235 1_555 D CU CU . A CU 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc5 A NE2 HIS 198 A HIS 242 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc6 A NE2 HIS 200 A HIS 244 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc7 A NE2 HIS 261 A HIS 305 4_456 D CU CU . A CU 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc8 A SD MET 270 A MET 314 1_555 C CU CU . A CU 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc9 C CU CU . A CU 358 1_555 J O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc10 D CU CU . A CU 359 1_555 E N1 AZI . A AZI 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? metalc ? metalc11 D CU CU . A CU 359 1_555 F O1 GOL . A GOL 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc12 D CU CU . A CU 359 1_555 F O2 GOL . A GOL 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc13 D CU CU . A CU 359 1_555 J O HOH . A HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 131 n n C1 C2 GOL sing 132 n n C1 H11 GOL sing 133 n n C1 H12 GOL sing 134 n n O1 HO1 GOL sing 135 n n C2 O2 GOL sing 136 n n C2 C3 GOL sing 137 n n C2 H2 GOL sing 138 n n O2 HO2 GOL sing 139 n n C3 O3 GOL sing 140 n n C3 H31 GOL sing 141 n n C3 H32 GOL sing 142 n n O3 HO3 GOL sing 143 n n # _atom_sites.entry_id 1PHM _atom_sites.fract_transf_matrix[1][1] 0.01462 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 357 357 CU CU . C 2 CU A 1 358 358 CU CU . D 2 CU A 1 359 359 CU CU . E 3 AZI A 1 361 361 AZI AZI . F 4 GOL A 1 362 362 GOL GOL . G 4 GOL A 1 601 601 GOL GOL . H 4 GOL A 1 602 602 GOL GOL . I 4 GOL A 1 603 603 GOL GOL . J 5 HOH A 1 360 360 HOH HOH . J 5 HOH A 2 363 363 HOH HOH . J 5 HOH A 3 364 364 HOH HOH . J 5 HOH A 4 365 365 HOH HOH . J 5 HOH A 5 366 366 HOH HOH . J 5 HOH A 6 367 367 HOH HOH . J 5 HOH A 7 368 368 HOH HOH . J 5 HOH A 8 370 370 HOH HOH . J 5 HOH A 9 371 371 HOH HOH . J 5 HOH A 10 372 372 HOH HOH . J 5 HOH A 11 374 374 HOH HOH . J 5 HOH A 12 375 375 HOH HOH . J 5 HOH A 13 376 376 HOH HOH . J 5 HOH A 14 377 377 HOH HOH . J 5 HOH A 15 378 378 HOH HOH . J 5 HOH A 16 379 379 HOH HOH . J 5 HOH A 17 380 380 HOH HOH . J 5 HOH A 18 381 381 HOH HOH . J 5 HOH A 19 382 382 HOH HOH . J 5 HOH A 20 383 383 HOH HOH . J 5 HOH A 21 384 384 HOH HOH . J 5 HOH A 22 385 385 HOH HOH . J 5 HOH A 23 386 386 HOH HOH . J 5 HOH A 24 387 387 HOH HOH . J 5 HOH A 25 388 388 HOH HOH . J 5 HOH A 26 389 389 HOH HOH . J 5 HOH A 27 390 390 HOH HOH . J 5 HOH A 28 391 391 HOH HOH . J 5 HOH A 29 394 394 HOH HOH . J 5 HOH A 30 395 395 HOH HOH . J 5 HOH A 31 396 396 HOH HOH . J 5 HOH A 32 397 397 HOH HOH . J 5 HOH A 33 398 398 HOH HOH . J 5 HOH A 34 399 399 HOH HOH . J 5 HOH A 35 400 400 HOH HOH . J 5 HOH A 36 401 401 HOH HOH . J 5 HOH A 37 402 402 HOH HOH . J 5 HOH A 38 403 403 HOH HOH . J 5 HOH A 39 404 404 HOH HOH . J 5 HOH A 40 406 406 HOH HOH . J 5 HOH A 41 407 407 HOH HOH . J 5 HOH A 42 408 408 HOH HOH . J 5 HOH A 43 409 409 HOH HOH . J 5 HOH A 44 410 410 HOH HOH . J 5 HOH A 45 411 411 HOH HOH . J 5 HOH A 46 412 412 HOH HOH . J 5 HOH A 47 413 413 HOH HOH . J 5 HOH A 48 414 414 HOH HOH . J 5 HOH A 49 415 415 HOH HOH . J 5 HOH A 50 416 416 HOH HOH . J 5 HOH A 51 417 417 HOH HOH . J 5 HOH A 52 418 418 HOH HOH . J 5 HOH A 53 419 419 HOH HOH . J 5 HOH A 54 420 420 HOH HOH . J 5 HOH A 55 421 421 HOH HOH . J 5 HOH A 56 422 422 HOH HOH . J 5 HOH A 57 423 423 HOH HOH . J 5 HOH A 58 424 424 HOH HOH . J 5 HOH A 59 425 425 HOH HOH . J 5 HOH A 60 426 426 HOH HOH . J 5 HOH A 61 427 427 HOH HOH . J 5 HOH A 62 428 428 HOH HOH . J 5 HOH A 63 429 429 HOH HOH . J 5 HOH A 64 431 431 HOH HOH . J 5 HOH A 65 432 432 HOH HOH . J 5 HOH A 66 433 433 HOH HOH . J 5 HOH A 67 435 435 HOH HOH . J 5 HOH A 68 436 436 HOH HOH . J 5 HOH A 69 437 437 HOH HOH . J 5 HOH A 70 438 438 HOH HOH . J 5 HOH A 71 439 439 HOH HOH . J 5 HOH A 72 440 440 HOH HOH . J 5 HOH A 73 441 441 HOH HOH . J 5 HOH A 74 442 442 HOH HOH . J 5 HOH A 75 443 443 HOH HOH . J 5 HOH A 76 444 444 HOH HOH . J 5 HOH A 77 445 445 HOH HOH . J 5 HOH A 78 447 447 HOH HOH . J 5 HOH A 79 448 448 HOH HOH . J 5 HOH A 80 449 449 HOH HOH . J 5 HOH A 81 450 450 HOH HOH . J 5 HOH A 82 452 452 HOH HOH . J 5 HOH A 83 453 453 HOH HOH . J 5 HOH A 84 454 454 HOH HOH . J 5 HOH A 85 455 455 HOH HOH . J 5 HOH A 86 456 456 HOH HOH . J 5 HOH A 87 457 457 HOH HOH . J 5 HOH A 88 458 458 HOH HOH . J 5 HOH A 89 459 459 HOH HOH . J 5 HOH A 90 460 460 HOH HOH . J 5 HOH A 91 461 461 HOH HOH . J 5 HOH A 92 462 462 HOH HOH . J 5 HOH A 93 463 463 HOH HOH . J 5 HOH A 94 464 464 HOH HOH . J 5 HOH A 95 465 465 HOH HOH . J 5 HOH A 96 466 466 HOH HOH . J 5 HOH A 97 467 467 HOH HOH . J 5 HOH A 98 468 468 HOH HOH . J 5 HOH A 99 469 469 HOH HOH . J 5 HOH A 100 470 470 HOH HOH . J 5 HOH A 101 471 471 HOH HOH . J 5 HOH A 102 472 472 HOH HOH . J 5 HOH A 103 473 473 HOH HOH . J 5 HOH A 104 474 474 HOH HOH . J 5 HOH A 105 475 475 HOH HOH . J 5 HOH A 106 476 476 HOH HOH . J 5 HOH A 107 477 477 HOH HOH . J 5 HOH A 108 478 478 HOH HOH . J 5 HOH A 109 479 479 HOH HOH . J 5 HOH A 110 481 481 HOH HOH . J 5 HOH A 111 482 482 HOH HOH . J 5 HOH A 112 483 483 HOH HOH . J 5 HOH A 113 484 484 HOH HOH . J 5 HOH A 114 485 485 HOH HOH . J 5 HOH A 115 486 486 HOH HOH . J 5 HOH A 116 487 487 HOH HOH . J 5 HOH A 117 488 488 HOH HOH . J 5 HOH A 118 489 489 HOH HOH . J 5 HOH A 119 490 490 HOH HOH . J 5 HOH A 120 491 491 HOH HOH . J 5 HOH A 121 492 492 HOH HOH . J 5 HOH A 122 493 493 HOH HOH . J 5 HOH A 123 494 494 HOH HOH . J 5 HOH A 124 495 495 HOH HOH . J 5 HOH A 125 496 496 HOH HOH . J 5 HOH A 126 497 497 HOH HOH . J 5 HOH A 127 498 498 HOH HOH . J 5 HOH A 128 500 500 HOH HOH . J 5 HOH A 129 501 501 HOH HOH . J 5 HOH A 130 502 502 HOH HOH . J 5 HOH A 131 503 503 HOH HOH . J 5 HOH A 132 504 504 HOH HOH . J 5 HOH A 133 505 505 HOH HOH . J 5 HOH A 134 506 506 HOH HOH . J 5 HOH A 135 507 507 HOH HOH . J 5 HOH A 136 508 508 HOH HOH . J 5 HOH A 137 509 509 HOH HOH . J 5 HOH A 138 510 510 HOH HOH . J 5 HOH A 139 511 511 HOH HOH . J 5 HOH A 140 512 512 HOH HOH . J 5 HOH A 141 513 513 HOH HOH . J 5 HOH A 142 514 514 HOH HOH . J 5 HOH A 143 515 515 HOH HOH . J 5 HOH A 144 516 516 HOH HOH . J 5 HOH A 145 517 517 HOH HOH . J 5 HOH A 146 518 518 HOH HOH . J 5 HOH A 147 519 519 HOH HOH . J 5 HOH A 148 520 520 HOH HOH . J 5 HOH A 149 521 521 HOH HOH . J 5 HOH A 150 522 522 HOH HOH . J 5 HOH A 151 523 523 HOH HOH . J 5 HOH A 152 524 524 HOH HOH . J 5 HOH A 153 525 525 HOH HOH . J 5 HOH A 154 526 526 HOH HOH . J 5 HOH A 155 527 527 HOH HOH . J 5 HOH A 156 528 528 HOH HOH . J 5 HOH A 157 529 529 HOH HOH . J 5 HOH A 158 530 530 HOH HOH . J 5 HOH A 159 531 531 HOH HOH . J 5 HOH A 160 532 532 HOH HOH . J 5 HOH A 161 534 534 HOH HOH . J 5 HOH A 162 535 535 HOH HOH . J 5 HOH A 163 536 536 HOH HOH . J 5 HOH A 164 537 537 HOH HOH . J 5 HOH A 165 538 538 HOH HOH . J 5 HOH A 166 539 539 HOH HOH . J 5 HOH A 167 540 540 HOH HOH . J 5 HOH A 168 541 541 HOH HOH . J 5 HOH A 169 542 542 HOH HOH . J 5 HOH A 170 543 543 HOH HOH . J 5 HOH A 171 544 544 HOH HOH . J 5 HOH A 172 545 545 HOH HOH . J 5 HOH A 173 546 546 HOH HOH . J 5 HOH A 174 547 547 HOH HOH . J 5 HOH A 175 548 548 HOH HOH . J 5 HOH A 176 549 549 HOH HOH . J 5 HOH A 177 550 550 HOH HOH . J 5 HOH A 178 551 551 HOH HOH . J 5 HOH A 179 552 552 HOH HOH . J 5 HOH A 180 553 553 HOH HOH . J 5 HOH A 181 554 554 HOH HOH . J 5 HOH A 182 555 555 HOH HOH . J 5 HOH A 183 556 556 HOH HOH . J 5 HOH A 184 557 557 HOH HOH . J 5 HOH A 185 558 558 HOH HOH . J 5 HOH A 186 559 559 HOH HOH . J 5 HOH A 187 560 560 HOH HOH . J 5 HOH A 188 561 561 HOH HOH . J 5 HOH A 189 562 562 HOH HOH . J 5 HOH A 190 563 563 HOH HOH . J 5 HOH A 191 564 564 HOH HOH . J 5 HOH A 192 565 565 HOH HOH . J 5 HOH A 193 566 566 HOH HOH . J 5 HOH A 194 567 567 HOH HOH . J 5 HOH A 195 568 568 HOH HOH . J 5 HOH A 196 569 569 HOH HOH . J 5 HOH A 197 570 570 HOH HOH . J 5 HOH A 198 571 571 HOH HOH . J 5 HOH A 199 572 572 HOH HOH . J 5 HOH A 200 573 573 HOH HOH . J 5 HOH A 201 574 574 HOH HOH . J 5 HOH A 202 575 575 HOH HOH . J 5 HOH A 203 576 576 HOH HOH . J 5 HOH A 204 577 577 HOH HOH . J 5 HOH A 205 578 578 HOH HOH . J 5 HOH A 206 579 579 HOH HOH . J 5 HOH A 207 580 580 HOH HOH . J 5 HOH A 208 581 581 HOH HOH . J 5 HOH A 209 582 582 HOH HOH . J 5 HOH A 210 583 583 HOH HOH . J 5 HOH A 211 584 584 HOH HOH . J 5 HOH A 212 586 586 HOH HOH . J 5 HOH A 213 587 587 HOH HOH . J 5 HOH A 214 588 588 HOH HOH . J 5 HOH A 215 589 589 HOH HOH . J 5 HOH A 216 590 590 HOH HOH . J 5 HOH A 217 591 591 HOH HOH . J 5 HOH A 218 592 592 HOH HOH . J 5 HOH A 219 593 593 HOH HOH . J 5 HOH A 220 594 594 HOH HOH . J 5 HOH A 221 595 595 HOH HOH . J 5 HOH A 222 596 596 HOH HOH . J 5 HOH A 223 597 597 HOH HOH . J 5 HOH A 224 598 598 HOH HOH . J 5 HOH A 225 599 599 HOH HOH . J 5 HOH A 226 600 600 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 21.025 5.258 48.903 1 50.23 ? C1 GOL 362 A 1 HETATM 2 O O1 GOL . . . F 4 20.763 6.333 48.034 1 42.42 ? O1 GOL 362 A 1 HETATM 3 C C2 GOL . . . F 4 22.519 4.943 48.876 1 57.09 ? C2 GOL 362 A 1 HETATM 4 O O2 GOL . . . F 4 23.232 5.907 49.661 1 51.23 ? O2 GOL 362 A 1 HETATM 5 C C3 GOL . . . F 4 22.806 3.556 49.439 1 64.15 ? C3 GOL 362 A 1 HETATM 6 O O3 GOL . . . F 4 24.185 3.249 49.298 1 74.58 ? O3 GOL 362 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 875 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #