data_1PHW # _model_server_result.job_id Br3CZCeruWqMbFXoVQyz5Q _model_server_result.datetime_utc '2024-11-23 15:46:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1phw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":70}' # _entry.id 1PHW # _exptl.entry_id 1PHW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.11 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ANY 5'-MONOPHOSPHATE NUCLEOTIDE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PHW _cell.length_a 118.258 _cell.length_b 118.258 _cell.length_c 118.258 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PHW _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 118.258 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 118.258 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H11 O7 P' _chem_comp.formula_weight 214.11 _chem_comp.id N _chem_comp.mon_nstd_flag . _chem_comp.name "ANY 5'-MONOPHOSPHATE NUCLEOTIDE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms "1-DEOXY-RIBOFURANOSE-5'-PHOSPHATE" # _atom_sites.entry_id 1PHW _atom_sites.fract_transf_matrix[1][1] 0.008456 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N A 1 70 70 N N . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OP3 N . . . B 2 1.854 -7.141 39.432 1 64.98 ? OP3 N 70 A 1 HETATM 2 P P N . . . B 2 3.122 -7.676 40.233 1 68.6 ? P N 70 A 1 HETATM 3 O OP1 N . . . B 2 4.304 -8.103 39.238 1 66.44 ? OP1 N 70 A 1 HETATM 4 O OP2 N . . . B 2 3.615 -6.491 41.11 1 65.73 ? OP2 N 70 A 1 HETATM 5 O O5' N . . . B 2 2.675 -8.899 41.219 1 66.05 ? O5' N 70 A 1 HETATM 6 C C5' N . . . B 2 3.547 -9.918 41.705 1 63.3 ? C5' N 70 A 1 HETATM 7 C C4' N . . . B 2 4.351 -9.563 43.009 1 63.02 ? C4' N 70 A 1 HETATM 8 O O4' N . . . B 2 5.687 -10.177 42.85 1 62.95 ? O4' N 70 A 1 HETATM 9 C C3' N . . . B 2 4.663 -8.081 43.351 1 61.32 ? C3' N 70 A 1 HETATM 10 O O3' N . . . B 2 3.665 -7.454 44.094 1 60.31 ? O3' N 70 A 1 HETATM 11 C C2' N . . . B 2 6.007 -8.24 44.06 1 60.83 ? C2' N 70 A 1 HETATM 12 O O2' N . . . B 2 6.736 -6.993 44.123 1 63.22 ? O2' N 70 A 1 HETATM 13 C C1' N . . . B 2 6.72 -9.237 43.119 1 62.43 ? C1' N 70 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #