data_1PJC # _model_server_result.job_id pkLdyIHXlWpK53fJhqan-w _model_server_result.datetime_utc '2024-11-30 17:56:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1PJC # _exptl.entry_id 1PJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1PJC _cell.length_a 122.1 _cell.length_b 122.1 _cell.length_c 184 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1PJC _atom_sites.fract_transf_matrix[1][1] 0.00819 _atom_sites.fract_transf_matrix[1][2] 0.004729 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009457 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 500 500 NAD NAD . C 3 HOH A 1 501 1 HOH WAT . C 3 HOH A 2 502 2 HOH WAT . C 3 HOH A 3 503 3 HOH WAT . C 3 HOH A 4 504 4 HOH WAT . C 3 HOH A 5 505 5 HOH WAT . C 3 HOH A 6 506 6 HOH WAT . C 3 HOH A 7 507 7 HOH WAT . C 3 HOH A 8 508 8 HOH WAT . C 3 HOH A 9 509 9 HOH WAT . C 3 HOH A 10 510 10 HOH WAT . C 3 HOH A 11 511 11 HOH WAT . C 3 HOH A 12 512 12 HOH WAT . C 3 HOH A 13 513 13 HOH WAT . C 3 HOH A 14 514 14 HOH WAT . C 3 HOH A 15 515 15 HOH WAT . C 3 HOH A 16 516 16 HOH WAT . C 3 HOH A 17 517 17 HOH WAT . C 3 HOH A 18 518 18 HOH WAT . C 3 HOH A 19 519 19 HOH WAT . C 3 HOH A 20 520 20 HOH WAT . C 3 HOH A 21 521 21 HOH WAT . C 3 HOH A 22 522 22 HOH WAT . C 3 HOH A 23 523 23 HOH WAT . C 3 HOH A 24 524 24 HOH WAT . C 3 HOH A 25 525 25 HOH WAT . C 3 HOH A 26 526 26 HOH WAT . C 3 HOH A 27 527 27 HOH WAT . C 3 HOH A 28 528 28 HOH WAT . C 3 HOH A 29 529 29 HOH WAT . C 3 HOH A 30 530 30 HOH WAT . C 3 HOH A 31 531 31 HOH WAT . C 3 HOH A 32 532 32 HOH WAT . C 3 HOH A 33 533 33 HOH WAT . C 3 HOH A 34 534 34 HOH WAT . C 3 HOH A 35 535 35 HOH WAT . C 3 HOH A 36 536 36 HOH WAT . C 3 HOH A 37 537 37 HOH WAT . C 3 HOH A 38 538 38 HOH WAT . C 3 HOH A 39 539 39 HOH WAT . C 3 HOH A 40 540 40 HOH WAT . C 3 HOH A 41 541 41 HOH WAT . C 3 HOH A 42 542 42 HOH WAT . C 3 HOH A 43 543 43 HOH WAT . C 3 HOH A 44 544 44 HOH WAT . C 3 HOH A 45 545 45 HOH WAT . C 3 HOH A 46 546 46 HOH WAT . C 3 HOH A 47 547 47 HOH WAT . C 3 HOH A 48 548 48 HOH WAT . C 3 HOH A 49 549 49 HOH WAT . C 3 HOH A 50 550 50 HOH WAT . C 3 HOH A 51 551 51 HOH WAT . C 3 HOH A 52 552 52 HOH WAT . C 3 HOH A 53 553 53 HOH WAT . C 3 HOH A 54 554 54 HOH WAT . C 3 HOH A 55 555 55 HOH WAT . C 3 HOH A 56 556 56 HOH WAT . C 3 HOH A 57 557 57 HOH WAT . C 3 HOH A 58 558 58 HOH WAT . C 3 HOH A 59 559 59 HOH WAT . C 3 HOH A 60 560 60 HOH WAT . C 3 HOH A 61 561 61 HOH WAT . C 3 HOH A 62 562 62 HOH WAT . C 3 HOH A 63 563 63 HOH WAT . C 3 HOH A 64 564 64 HOH WAT . C 3 HOH A 65 565 65 HOH WAT . C 3 HOH A 66 566 66 HOH WAT . C 3 HOH A 67 567 67 HOH WAT . C 3 HOH A 68 568 68 HOH WAT . C 3 HOH A 69 569 69 HOH WAT . C 3 HOH A 70 570 70 HOH WAT . C 3 HOH A 71 571 71 HOH WAT . C 3 HOH A 72 572 72 HOH WAT . C 3 HOH A 73 573 73 HOH WAT . C 3 HOH A 74 574 74 HOH WAT . C 3 HOH A 75 575 75 HOH WAT . C 3 HOH A 76 576 76 HOH WAT . C 3 HOH A 77 577 77 HOH WAT . C 3 HOH A 78 578 78 HOH WAT . C 3 HOH A 79 579 79 HOH WAT . C 3 HOH A 80 580 80 HOH WAT . C 3 HOH A 81 581 81 HOH WAT . C 3 HOH A 82 582 82 HOH WAT . C 3 HOH A 83 583 83 HOH WAT . C 3 HOH A 84 584 84 HOH WAT . C 3 HOH A 85 585 85 HOH WAT . C 3 HOH A 86 586 86 HOH WAT . C 3 HOH A 87 587 87 HOH WAT . C 3 HOH A 88 588 88 HOH WAT . C 3 HOH A 89 589 89 HOH WAT . C 3 HOH A 90 590 90 HOH WAT . C 3 HOH A 91 591 91 HOH WAT . C 3 HOH A 92 592 92 HOH WAT . C 3 HOH A 93 593 93 HOH WAT . C 3 HOH A 94 594 94 HOH WAT . C 3 HOH A 95 595 95 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 12.299 10.672 21.219 1 37.23 ? PA NAD 500 A 1 HETATM 2 O O1A NAD . . . B 2 12.566 10.112 22.611 1 50.86 ? O1A NAD 500 A 1 HETATM 3 O O2A NAD . . . B 2 10.848 10.527 20.665 1 37.67 ? O2A NAD 500 A 1 HETATM 4 O O5B NAD . . . B 2 13.381 10.031 20.136 1 36 ? O5B NAD 500 A 1 HETATM 5 C C5B NAD . . . B 2 14.794 9.841 20.484 1 25.88 ? C5B NAD 500 A 1 HETATM 6 C C4B NAD . . . B 2 15.173 8.472 20.179 1 36.71 ? C4B NAD 500 A 1 HETATM 7 O O4B NAD . . . B 2 16.614 8.376 20.2 1 26.56 ? O4B NAD 500 A 1 HETATM 8 C C3B NAD . . . B 2 14.742 7.252 21.112 1 29.61 ? C3B NAD 500 A 1 HETATM 9 O O3B NAD . . . B 2 13.931 6.301 20.254 1 21.65 ? O3B NAD 500 A 1 HETATM 10 C C2B NAD . . . B 2 16.041 6.57 21.657 1 26.26 ? C2B NAD 500 A 1 HETATM 11 O O2B NAD . . . B 2 16.032 5.193 21.829 1 26.86 ? O2B NAD 500 A 1 HETATM 12 C C1B NAD . . . B 2 16.957 7.057 20.525 1 38.11 ? C1B NAD 500 A 1 HETATM 13 N N9A NAD . . . B 2 18.327 7.108 20.904 1 37.04 ? N9A NAD 500 A 1 HETATM 14 C C8A NAD . . . B 2 18.938 7.413 22.124 1 24.24 ? C8A NAD 500 A 1 HETATM 15 N N7A NAD . . . B 2 20.21 7.134 22.158 1 28.79 ? N7A NAD 500 A 1 HETATM 16 C C5A NAD . . . B 2 20.5 6.609 20.947 1 25.91 ? C5A NAD 500 A 1 HETATM 17 C C6A NAD . . . B 2 21.754 6.068 20.394 1 22.42 ? C6A NAD 500 A 1 HETATM 18 N N6A NAD . . . B 2 22.921 6.017 21.014 1 34.84 ? N6A NAD 500 A 1 HETATM 19 N N1A NAD . . . B 2 21.613 5.679 19.069 1 40.92 ? N1A NAD 500 A 1 HETATM 20 C C2A NAD . . . B 2 20.538 5.715 18.341 1 26.68 ? C2A NAD 500 A 1 HETATM 21 N N3A NAD . . . B 2 19.359 6.164 18.834 1 25.84 ? N3A NAD 500 A 1 HETATM 22 C C4A NAD . . . B 2 19.366 6.634 20.146 1 24.58 ? C4A NAD 500 A 1 HETATM 23 O O3 NAD . . . B 2 12.719 12.172 21.177 1 39.02 ? O3 NAD 500 A 1 HETATM 24 P PN NAD . . . B 2 12.318 13.257 20.025 1 36.74 ? PN NAD 500 A 1 HETATM 25 O O1N NAD . . . B 2 12.468 12.436 18.777 1 27.2 ? O1N NAD 500 A 1 HETATM 26 O O2N NAD . . . B 2 11.038 13.866 20.464 1 38.1 ? O2N NAD 500 A 1 HETATM 27 O O5D NAD . . . B 2 13.553 14.325 20.042 1 43.41 ? O5D NAD 500 A 1 HETATM 28 C C5D NAD . . . B 2 14.753 14.143 19.187 1 34.36 ? C5D NAD 500 A 1 HETATM 29 C C4D NAD . . . B 2 15.776 15.136 19.443 1 33.27 ? C4D NAD 500 A 1 HETATM 30 O O4D NAD . . . B 2 15.395 16.382 18.629 1 52.46 ? O4D NAD 500 A 1 HETATM 31 C C3D NAD . . . B 2 15.923 15.746 20.91 1 43.12 ? C3D NAD 500 A 1 HETATM 32 O O3D NAD . . . B 2 17.303 15.867 21.088 1 74.88 ? O3D NAD 500 A 1 HETATM 33 C C2D NAD . . . B 2 15.157 17.137 20.906 1 37.19 ? C2D NAD 500 A 1 HETATM 34 O O2D NAD . . . B 2 15.701 18.05 21.807 1 100 ? O2D NAD 500 A 1 HETATM 35 C C1D NAD . . . B 2 15.401 17.566 19.413 1 52.47 ? C1D NAD 500 A 1 HETATM 36 N N1N NAD . . . B 2 14.381 18.634 18.75 1 53.65 ? N1N NAD 500 A 1 HETATM 37 C C2N NAD . . . B 2 14.817 19.802 17.989 1 47.15 ? C2N NAD 500 A 1 HETATM 38 C C3N NAD . . . B 2 13.742 20.685 17.61 1 94.21 ? C3N NAD 500 A 1 HETATM 39 C C7N NAD . . . B 2 14.245 22.003 16.766 1 50.44 ? C7N NAD 500 A 1 HETATM 40 O O7N NAD . . . B 2 13.363 22.816 16.371 1 37.74 ? O7N NAD 500 A 1 HETATM 41 N N7N NAD . . . B 2 15.588 22.159 16.531 1 51.59 ? N7N NAD 500 A 1 HETATM 42 C C4N NAD . . . B 2 12.365 20.509 17.886 1 37.68 ? C4N NAD 500 A 1 HETATM 43 C C5N NAD . . . B 2 12.078 19.302 18.643 1 100 ? C5N NAD 500 A 1 HETATM 44 C C6N NAD . . . B 2 13.061 18.39 19.058 1 46.35 ? C6N NAD 500 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #