data_1PK3 # _model_server_result.job_id 40YB2wwmFjRAhil6MwF7vw _model_server_result.datetime_utc '2024-10-10 11:18:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pk3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1002}' # _entry.id 1PK3 # _exptl.entry_id 1PK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PK3 _cell.length_a 52.15 _cell.length_b 63.993 _cell.length_c 103.638 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 1PK3 _atom_sites.fract_transf_matrix[1][1] 0.019175 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015627 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009649 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 BME A 1 1001 1 BME SEO . E 2 BME B 1 1002 2 BME SEO . F 2 BME C 1 1003 3 BME SEO . G 3 HOH A 1 1002 9 HOH TIP . G 3 HOH A 2 1003 11 HOH TIP . G 3 HOH A 3 1004 16 HOH TIP . G 3 HOH A 4 1005 19 HOH TIP . G 3 HOH A 5 1006 24 HOH TIP . G 3 HOH A 6 1007 33 HOH TIP . G 3 HOH A 7 1008 37 HOH TIP . G 3 HOH A 8 1009 41 HOH TIP . G 3 HOH A 9 1010 50 HOH TIP . G 3 HOH A 10 1011 55 HOH TIP . G 3 HOH A 11 1012 57 HOH TIP . G 3 HOH A 12 1013 61 HOH TIP . G 3 HOH A 13 1014 62 HOH TIP . G 3 HOH A 14 1015 63 HOH TIP . G 3 HOH A 15 1016 68 HOH TIP . G 3 HOH A 16 1017 71 HOH TIP . G 3 HOH A 17 1018 72 HOH TIP . G 3 HOH A 18 1019 77 HOH TIP . G 3 HOH A 19 1020 79 HOH TIP . G 3 HOH A 20 1021 90 HOH TIP . G 3 HOH A 21 1022 92 HOH TIP . G 3 HOH A 22 1023 94 HOH TIP . G 3 HOH A 23 1024 97 HOH TIP . G 3 HOH A 24 1025 100 HOH TIP . G 3 HOH A 25 1026 101 HOH TIP . G 3 HOH A 26 1027 111 HOH TIP . G 3 HOH A 27 1028 113 HOH TIP . G 3 HOH A 28 1029 114 HOH TIP . G 3 HOH A 29 1030 120 HOH TIP . G 3 HOH A 30 1031 123 HOH TIP . G 3 HOH A 31 1032 128 HOH TIP . G 3 HOH A 32 1033 135 HOH TIP . G 3 HOH A 33 1034 136 HOH TIP . G 3 HOH A 34 1035 137 HOH TIP . G 3 HOH A 35 1036 138 HOH TIP . G 3 HOH A 36 1037 142 HOH TIP . G 3 HOH A 37 1038 146 HOH TIP . H 3 HOH B 1 1003 2 HOH TIP . H 3 HOH B 2 1004 4 HOH TIP . H 3 HOH B 3 1005 6 HOH TIP . H 3 HOH B 4 1006 15 HOH TIP . H 3 HOH B 5 1007 17 HOH TIP . H 3 HOH B 6 1008 22 HOH TIP . H 3 HOH B 7 1009 25 HOH TIP . H 3 HOH B 8 1010 28 HOH TIP . H 3 HOH B 9 1011 29 HOH TIP . H 3 HOH B 10 1012 32 HOH TIP . H 3 HOH B 11 1013 34 HOH TIP . H 3 HOH B 12 1014 38 HOH TIP . H 3 HOH B 13 1015 39 HOH TIP . H 3 HOH B 14 1016 40 HOH TIP . H 3 HOH B 15 1017 43 HOH TIP . H 3 HOH B 16 1018 47 HOH TIP . H 3 HOH B 17 1019 51 HOH TIP . H 3 HOH B 18 1020 56 HOH TIP . H 3 HOH B 19 1021 58 HOH TIP . H 3 HOH B 20 1022 65 HOH TIP . H 3 HOH B 21 1023 66 HOH TIP . H 3 HOH B 22 1024 70 HOH TIP . H 3 HOH B 23 1025 73 HOH TIP . H 3 HOH B 24 1026 74 HOH TIP . H 3 HOH B 25 1027 76 HOH TIP . H 3 HOH B 26 1028 78 HOH TIP . H 3 HOH B 27 1029 81 HOH TIP . H 3 HOH B 28 1030 82 HOH TIP . H 3 HOH B 29 1031 83 HOH TIP . H 3 HOH B 30 1032 86 HOH TIP . H 3 HOH B 31 1033 88 HOH TIP . H 3 HOH B 32 1034 89 HOH TIP . H 3 HOH B 33 1035 98 HOH TIP . H 3 HOH B 34 1036 103 HOH TIP . H 3 HOH B 35 1037 105 HOH TIP . H 3 HOH B 36 1038 106 HOH TIP . H 3 HOH B 37 1039 110 HOH TIP . H 3 HOH B 38 1040 119 HOH TIP . H 3 HOH B 39 1041 121 HOH TIP . H 3 HOH B 40 1042 124 HOH TIP . H 3 HOH B 41 1043 127 HOH TIP . H 3 HOH B 42 1044 129 HOH TIP . H 3 HOH B 43 1045 130 HOH TIP . H 3 HOH B 44 1046 131 HOH TIP . H 3 HOH B 45 1047 139 HOH TIP . H 3 HOH B 46 1048 141 HOH TIP . H 3 HOH B 47 1049 144 HOH TIP . I 3 HOH C 1 1004 1 HOH TIP . I 3 HOH C 2 1005 3 HOH TIP . I 3 HOH C 3 1006 5 HOH TIP . I 3 HOH C 4 1007 7 HOH TIP . I 3 HOH C 5 1008 8 HOH TIP . I 3 HOH C 6 1009 10 HOH TIP . I 3 HOH C 7 1010 12 HOH TIP . I 3 HOH C 8 1011 13 HOH TIP . I 3 HOH C 9 1012 14 HOH TIP . I 3 HOH C 10 1013 18 HOH TIP . I 3 HOH C 11 1014 20 HOH TIP . I 3 HOH C 12 1015 21 HOH TIP . I 3 HOH C 13 1016 23 HOH TIP . I 3 HOH C 14 1017 26 HOH TIP . I 3 HOH C 15 1018 27 HOH TIP . I 3 HOH C 16 1019 30 HOH TIP . I 3 HOH C 17 1020 31 HOH TIP . I 3 HOH C 18 1021 35 HOH TIP . I 3 HOH C 19 1022 36 HOH TIP . I 3 HOH C 20 1023 42 HOH TIP . I 3 HOH C 21 1024 44 HOH TIP . I 3 HOH C 22 1025 45 HOH TIP . I 3 HOH C 23 1026 46 HOH TIP . I 3 HOH C 24 1027 48 HOH TIP . I 3 HOH C 25 1028 49 HOH TIP . I 3 HOH C 26 1029 52 HOH TIP . I 3 HOH C 27 1030 53 HOH TIP . I 3 HOH C 28 1031 54 HOH TIP . I 3 HOH C 29 1032 59 HOH TIP . I 3 HOH C 30 1033 60 HOH TIP . I 3 HOH C 31 1034 64 HOH TIP . I 3 HOH C 32 1035 67 HOH TIP . I 3 HOH C 33 1036 69 HOH TIP . I 3 HOH C 34 1037 75 HOH TIP . I 3 HOH C 35 1038 80 HOH TIP . I 3 HOH C 36 1039 84 HOH TIP . I 3 HOH C 37 1040 85 HOH TIP . I 3 HOH C 38 1041 87 HOH TIP . I 3 HOH C 39 1042 91 HOH TIP . I 3 HOH C 40 1043 93 HOH TIP . I 3 HOH C 41 1044 95 HOH TIP . I 3 HOH C 42 1045 96 HOH TIP . I 3 HOH C 43 1046 99 HOH TIP . I 3 HOH C 44 1047 102 HOH TIP . I 3 HOH C 45 1048 104 HOH TIP . I 3 HOH C 46 1049 107 HOH TIP . I 3 HOH C 47 1050 108 HOH TIP . I 3 HOH C 48 1051 109 HOH TIP . I 3 HOH C 49 1052 112 HOH TIP . I 3 HOH C 50 1053 115 HOH TIP . I 3 HOH C 51 1054 116 HOH TIP . I 3 HOH C 52 1055 117 HOH TIP . I 3 HOH C 53 1056 118 HOH TIP . I 3 HOH C 54 1057 122 HOH TIP . I 3 HOH C 55 1058 125 HOH TIP . I 3 HOH C 56 1059 126 HOH TIP . I 3 HOH C 57 1060 132 HOH TIP . I 3 HOH C 58 1061 133 HOH TIP . I 3 HOH C 59 1062 134 HOH TIP . I 3 HOH C 60 1063 140 HOH TIP . I 3 HOH C 61 1064 143 HOH TIP . I 3 HOH C 62 1065 145 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . E 2 36.328 16.679 14.961 1 54.41 ? C1 BME 1002 B 1 HETATM 2 C C2 BME . . . E 2 37.51 16.305 14.09 1 55 ? C2 BME 1002 B 1 HETATM 3 O O1 BME . . . E 2 35.071 16.504 14.334 1 53.99 ? O1 BME 1002 B 1 HETATM 4 S S2 BME . . . E 2 38.513 14.939 14.75 1 53.89 ? S2 BME 1002 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #