data_1PLF # _model_server_result.job_id WwGruYFVcxWWfgYpSNYa5w _model_server_result.datetime_utc '2025-09-09 12:06:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1plf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 1PLF # _exptl.entry_id 1PLF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.763 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRACYANONICKELATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PLF _cell.length_a 63.7 _cell.length_b 68 _cell.length_c 80.3 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PLF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 25 1_555 A SG CYS 38 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? disulf ? disulf2 A SG CYS 14 A CYS 27 1_555 A SG CYS 54 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf3 B SG CYS 12 B CYS 25 1_555 B SG CYS 38 B CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf4 B SG CYS 14 B CYS 27 1_555 B SG CYS 54 B CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? disulf ? disulf5 C SG CYS 12 C CYS 25 1_555 C SG CYS 38 C CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? disulf ? disulf6 C SG CYS 14 C CYS 27 1_555 C SG CYS 54 C CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? disulf ? disulf7 D SG CYS 12 D CYS 25 1_555 D SG CYS 38 D CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf8 D SG CYS 14 D CYS 27 1_555 D SG CYS 54 D CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? # _chem_comp.formula 'C4 N4 Ni -2' _chem_comp.formula_weight 162.763 _chem_comp.id TCN _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRACYANONICKELATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NI C1 TCN sing 248 n n NI C2 TCN sing 249 n n NI C3 TCN sing 250 n n NI C4 TCN sing 251 n n C1 N1 TCN trip 252 n n C2 N2 TCN trip 253 n n C3 N3 TCN trip 254 n n C4 N4 TCN trip 255 n n # _atom_sites.entry_id 1PLF _atom_sites.fract_transf_matrix[1][1] 0.015699 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TCN D 1 1 1 TCN TCN . F 3 HOH A 1 405 405 HOH HOH . F 3 HOH A 2 406 406 HOH HOH . F 3 HOH A 3 413 413 HOH HOH . F 3 HOH A 4 416 416 HOH HOH . F 3 HOH A 5 421 421 HOH HOH . F 3 HOH A 6 427 427 HOH HOH . F 3 HOH A 7 428 428 HOH HOH . F 3 HOH A 8 436 436 HOH HOH . F 3 HOH A 9 441 441 HOH HOH . F 3 HOH A 10 443 443 HOH HOH . F 3 HOH A 11 449 449 HOH HOH . F 3 HOH A 12 453 453 HOH HOH . F 3 HOH A 13 458 458 HOH HOH . F 3 HOH A 14 459 459 HOH HOH . F 3 HOH A 15 502 502 HOH HOH . G 3 HOH B 1 403 403 HOH HOH . G 3 HOH B 2 408 408 HOH HOH . G 3 HOH B 3 409 409 HOH HOH . G 3 HOH B 4 414 414 HOH HOH . G 3 HOH B 5 415 415 HOH HOH . G 3 HOH B 6 418 418 HOH HOH . G 3 HOH B 7 422 422 HOH HOH . G 3 HOH B 8 425 425 HOH HOH . G 3 HOH B 9 432 432 HOH HOH . G 3 HOH B 10 433 433 HOH HOH . G 3 HOH B 11 434 434 HOH HOH . G 3 HOH B 12 437 437 HOH HOH . G 3 HOH B 13 439 439 HOH HOH . G 3 HOH B 14 444 444 HOH HOH . G 3 HOH B 15 445 445 HOH HOH . G 3 HOH B 16 447 447 HOH HOH . G 3 HOH B 17 451 451 HOH HOH . G 3 HOH B 18 454 454 HOH HOH . G 3 HOH B 19 455 455 HOH HOH . G 3 HOH B 20 457 457 HOH HOH . G 3 HOH B 21 462 462 HOH HOH . G 3 HOH B 22 463 463 HOH HOH . G 3 HOH B 23 471 471 HOH HOH . G 3 HOH B 24 501 501 HOH HOH . G 3 HOH B 25 564 564 HOH HOH . H 3 HOH C 1 401 401 HOH HOH . H 3 HOH C 2 404 404 HOH HOH . H 3 HOH C 3 407 407 HOH HOH . H 3 HOH C 4 410 410 HOH HOH . H 3 HOH C 5 411 411 HOH HOH . H 3 HOH C 6 419 419 HOH HOH . H 3 HOH C 7 424 424 HOH HOH . H 3 HOH C 8 426 426 HOH HOH . H 3 HOH C 9 430 430 HOH HOH . H 3 HOH C 10 438 438 HOH HOH . H 3 HOH C 11 446 446 HOH HOH . H 3 HOH C 12 452 452 HOH HOH . H 3 HOH C 13 456 456 HOH HOH . H 3 HOH C 14 464 464 HOH HOH . H 3 HOH C 15 469 469 HOH HOH . H 3 HOH C 16 473 473 HOH HOH . H 3 HOH C 17 515 515 HOH HOH . H 3 HOH C 18 523 523 HOH HOH . H 3 HOH C 19 557 557 HOH HOH . I 3 HOH D 1 402 402 HOH HOH . I 3 HOH D 2 412 412 HOH HOH . I 3 HOH D 3 417 417 HOH HOH . I 3 HOH D 4 420 420 HOH HOH . I 3 HOH D 5 423 423 HOH HOH . I 3 HOH D 6 429 429 HOH HOH . I 3 HOH D 7 431 431 HOH HOH . I 3 HOH D 8 435 435 HOH HOH . I 3 HOH D 9 440 440 HOH HOH . I 3 HOH D 10 442 442 HOH HOH . I 3 HOH D 11 448 448 HOH HOH . I 3 HOH D 12 450 450 HOH HOH . I 3 HOH D 13 460 460 HOH HOH . I 3 HOH D 14 461 461 HOH HOH . I 3 HOH D 15 465 465 HOH HOH . I 3 HOH D 16 466 466 HOH HOH . I 3 HOH D 17 468 468 HOH HOH . I 3 HOH D 18 472 472 HOH HOH . I 3 HOH D 19 504 504 HOH HOH . I 3 HOH D 20 530 530 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 NI NI TCN . . . E 2 27.796 35.634 18.291 1 34.72 ? NI TCN 1 D 1 HETATM 2 C C1 TCN . . . E 2 28.803 34.974 16.86 1 33.97 ? C1 TCN 1 D 1 HETATM 3 N N1 TCN . . . E 2 29.407 34.547 15.979 1 33.39 ? N1 TCN 1 D 1 HETATM 4 C C2 TCN . . . E 2 26.711 36.575 17.094 1 33.52 ? C2 TCN 1 D 1 HETATM 5 N N2 TCN . . . E 2 26.057 37.171 16.36 1 33.09 ? N2 TCN 1 D 1 HETATM 6 C C3 TCN . . . E 2 26.74 36.229 19.715 1 35.06 ? C3 TCN 1 D 1 HETATM 7 N N3 TCN . . . E 2 26.101 36.614 20.591 1 36.4 ? N3 TCN 1 D 1 HETATM 8 C C4 TCN . . . E 2 28.846 34.647 19.484 1 33.79 ? C4 TCN 1 D 1 HETATM 9 N N4 TCN . . . E 2 29.481 34.024 20.215 1 32.76 ? N4 TCN 1 D 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #