data_1PM1
#
_model_server_result.job_id            2cCyva1719kDQi6Tsqq2eg 
_model_server_result.datetime_utc      '2024-11-23 03:40:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1pm1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":181}' 
#
_entry.id    1PM1 
#
_exptl.entry_id    1PM1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              69.085 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMIDAZOLE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1PM1 
_cell.length_a            39.31 
_cell.length_b            125.47 
_cell.length_c            33.88 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1PM1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 X CYS 2 1_555 A SG CYS 122 X CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
disulf ? disulf2 A SG CYS 40 X CYS 39 1_555 A SG CYS 171 X CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc1 A NE2 HIS 58 X HIS 57 1_555 B FE HEM . X HEM 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc2 B FE HEM . X HEM 180 1_555 C N1 IMD . X IMD 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
#
_chem_comp.formula           'C3 H5 N2 1' 
_chem_comp.formula_weight    69.085 
_chem_comp.id                IMD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IMD sing 255 n y 
N1 C5 IMD sing 256 n y 
N1 HN1 IMD sing 257 n n 
C2 N3 IMD doub 258 n y 
C2 H2 IMD sing 259 n n 
N3 C4 IMD sing 260 n y 
N3 HN3 IMD sing 261 n n 
C4 C5 IMD doub 262 n y 
C4 H4 IMD sing 263 n n 
C5 H5 IMD sing 264 n n 
#
_atom_sites.entry_id                     1PM1 
_atom_sites.fract_transf_matrix[1][1]    0.025439 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00797 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029516 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM X 1 180 180 HEM HEM . 
C 3 IMD X 1 181 181 IMD IMD . 
D 4 HOH X 1 182 182 HOH HOH . 
D 4 HOH X 2 183 183 HOH HOH . 
D 4 HOH X 3 184 184 HOH HOH . 
D 4 HOH X 4 185 185 HOH HOH . 
D 4 HOH X 5 186 186 HOH HOH . 
D 4 HOH X 6 187 187 HOH HOH . 
D 4 HOH X 7 188 188 HOH HOH . 
D 4 HOH X 8 189 189 HOH HOH . 
D 4 HOH X 9 190 190 HOH HOH . 
D 4 HOH X 10 191 191 HOH HOH . 
D 4 HOH X 11 192 192 HOH HOH . 
D 4 HOH X 12 193 193 HOH HOH . 
D 4 HOH X 13 194 194 HOH HOH . 
D 4 HOH X 14 195 195 HOH HOH . 
D 4 HOH X 15 196 196 HOH HOH . 
D 4 HOH X 16 197 197 HOH HOH . 
D 4 HOH X 17 198 198 HOH HOH . 
D 4 HOH X 18 199 199 HOH HOH . 
D 4 HOH X 19 200 200 HOH HOH . 
D 4 HOH X 20 201 201 HOH HOH . 
D 4 HOH X 21 202 202 HOH HOH . 
D 4 HOH X 22 203 203 HOH HOH . 
D 4 HOH X 23 204 204 HOH HOH . 
D 4 HOH X 24 205 205 HOH HOH . 
D 4 HOH X 25 206 206 HOH HOH . 
D 4 HOH X 26 207 207 HOH HOH . 
D 4 HOH X 27 208 208 HOH HOH . 
D 4 HOH X 28 209 209 HOH HOH . 
D 4 HOH X 29 210 210 HOH HOH . 
D 4 HOH X 30 211 211 HOH HOH . 
D 4 HOH X 31 212 212 HOH HOH . 
D 4 HOH X 32 213 213 HOH HOH . 
D 4 HOH X 33 214 214 HOH HOH . 
D 4 HOH X 34 215 215 HOH HOH . 
D 4 HOH X 35 216 216 HOH HOH . 
D 4 HOH X 36 217 217 HOH HOH . 
D 4 HOH X 37 218 218 HOH HOH . 
D 4 HOH X 38 219 219 HOH HOH . 
D 4 HOH X 39 220 220 HOH HOH . 
D 4 HOH X 40 221 221 HOH HOH . 
D 4 HOH X 41 222 222 HOH HOH . 
D 4 HOH X 42 223 223 HOH HOH . 
D 4 HOH X 43 224 224 HOH HOH . 
D 4 HOH X 44 225 225 HOH HOH . 
D 4 HOH X 45 226 226 HOH HOH . 
D 4 HOH X 46 227 227 HOH HOH . 
D 4 HOH X 47 228 228 HOH HOH . 
D 4 HOH X 48 229 229 HOH HOH . 
D 4 HOH X 49 230 230 HOH HOH . 
D 4 HOH X 50 231 231 HOH HOH . 
D 4 HOH X 51 232 232 HOH HOH . 
D 4 HOH X 52 233 233 HOH HOH . 
D 4 HOH X 53 234 234 HOH HOH . 
D 4 HOH X 54 235 235 HOH HOH . 
D 4 HOH X 55 237 237 HOH HOH . 
D 4 HOH X 56 238 238 HOH HOH . 
D 4 HOH X 57 239 239 HOH HOH . 
D 4 HOH X 58 240 240 HOH HOH . 
D 4 HOH X 59 241 241 HOH HOH . 
D 4 HOH X 60 242 242 HOH HOH . 
D 4 HOH X 61 243 243 HOH HOH . 
D 4 HOH X 62 244 244 HOH HOH . 
D 4 HOH X 63 245 245 HOH HOH . 
D 4 HOH X 64 246 246 HOH HOH . 
D 4 HOH X 65 247 247 HOH HOH . 
D 4 HOH X 66 248 248 HOH HOH . 
D 4 HOH X 67 249 249 HOH HOH . 
D 4 HOH X 68 250 250 HOH HOH . 
D 4 HOH X 69 251 251 HOH HOH . 
D 4 HOH X 70 252 252 HOH HOH . 
D 4 HOH X 71 253 253 HOH HOH . 
D 4 HOH X 72 254 254 HOH HOH . 
D 4 HOH X 73 255 255 HOH HOH . 
D 4 HOH X 74 256 256 HOH HOH . 
D 4 HOH X 75 257 257 HOH HOH . 
D 4 HOH X 76 258 258 HOH HOH . 
D 4 HOH X 77 259 259 HOH HOH . 
D 4 HOH X 78 260 260 HOH HOH . 
D 4 HOH X 79 261 261 HOH HOH . 
D 4 HOH X 80 262 262 HOH HOH . 
D 4 HOH X 81 263 263 HOH HOH . 
D 4 HOH X 82 264 264 HOH HOH . 
D 4 HOH X 83 265 265 HOH HOH . 
D 4 HOH X 84 266 266 HOH HOH . 
D 4 HOH X 85 267 267 HOH HOH . 
D 4 HOH X 86 268 268 HOH HOH . 
D 4 HOH X 87 269 269 HOH HOH . 
D 4 HOH X 88 270 270 HOH HOH . 
D 4 HOH X 89 271 271 HOH HOH . 
D 4 HOH X 90 272 272 HOH HOH . 
D 4 HOH X 91 273 273 HOH HOH . 
D 4 HOH X 92 275 275 HOH HOH . 
D 4 HOH X 93 276 276 HOH HOH . 
D 4 HOH X 94 277 277 HOH HOH . 
D 4 HOH X 95 278 278 HOH HOH . 
D 4 HOH X 96 279 279 HOH HOH . 
D 4 HOH X 97 280 280 HOH HOH . 
D 4 HOH X 98 281 281 HOH HOH . 
D 4 HOH X 99 282 282 HOH HOH . 
D 4 HOH X 100 283 283 HOH HOH . 
D 4 HOH X 101 284 284 HOH HOH . 
D 4 HOH X 102 285 285 HOH HOH . 
D 4 HOH X 103 286 286 HOH HOH . 
D 4 HOH X 104 287 287 HOH HOH . 
D 4 HOH X 105 288 288 HOH HOH . 
D 4 HOH X 106 289 289 HOH HOH . 
D 4 HOH X 107 290 290 HOH HOH . 
D 4 HOH X 108 291 291 HOH HOH . 
D 4 HOH X 109 292 292 HOH HOH . 
D 4 HOH X 110 293 293 HOH HOH . 
D 4 HOH X 111 294 294 HOH HOH . 
D 4 HOH X 112 295 295 HOH HOH . 
D 4 HOH X 113 296 296 HOH HOH . 
D 4 HOH X 114 297 297 HOH HOH . 
D 4 HOH X 115 298 298 HOH HOH . 
D 4 HOH X 116 299 299 HOH HOH . 
D 4 HOH X 117 300 300 HOH HOH . 
D 4 HOH X 118 301 301 HOH HOH . 
D 4 HOH X 119 302 302 HOH HOH . 
D 4 HOH X 120 304 304 HOH HOH . 
D 4 HOH X 121 306 306 HOH HOH . 
D 4 HOH X 122 307 307 HOH HOH . 
D 4 HOH X 123 308 308 HOH HOH . 
D 4 HOH X 124 309 309 HOH HOH . 
D 4 HOH X 125 310 310 HOH HOH . 
D 4 HOH X 126 311 311 HOH HOH . 
D 4 HOH X 127 312 312 HOH HOH . 
D 4 HOH X 128 313 313 HOH HOH . 
D 4 HOH X 129 315 315 HOH HOH . 
D 4 HOH X 130 316 316 HOH HOH . 
D 4 HOH X 131 317 317 HOH HOH . 
D 4 HOH X 132 318 318 HOH HOH . 
D 4 HOH X 133 319 319 HOH HOH . 
D 4 HOH X 134 320 320 HOH HOH . 
D 4 HOH X 135 321 321 HOH HOH . 
D 4 HOH X 136 322 322 HOH HOH . 
D 4 HOH X 137 323 323 HOH HOH . 
D 4 HOH X 138 324 324 HOH HOH . 
D 4 HOH X 139 325 325 HOH HOH . 
D 4 HOH X 140 326 326 HOH HOH . 
D 4 HOH X 141 327 327 HOH HOH . 
D 4 HOH X 142 328 328 HOH HOH . 
D 4 HOH X 143 329 329 HOH HOH . 
D 4 HOH X 144 330 330 HOH HOH . 
D 4 HOH X 145 331 331 HOH HOH . 
D 4 HOH X 146 332 332 HOH HOH . 
D 4 HOH X 147 333 333 HOH HOH . 
D 4 HOH X 148 334 334 HOH HOH . 
D 4 HOH X 149 335 335 HOH HOH . 
D 4 HOH X 150 336 336 HOH HOH . 
D 4 HOH X 151 337 337 HOH HOH . 
D 4 HOH X 152 338 338 HOH HOH . 
D 4 HOH X 153 339 339 HOH HOH . 
D 4 HOH X 154 340 340 HOH HOH . 
D 4 HOH X 155 341 341 HOH HOH . 
D 4 HOH X 156 343 343 HOH HOH . 
D 4 HOH X 157 344 344 HOH HOH . 
D 4 HOH X 158 345 345 HOH HOH . 
D 4 HOH X 159 365 365 HOH HOH . 
D 4 HOH X 160 367 367 HOH HOH . 
D 4 HOH X 161 368 368 HOH HOH . 
D 4 HOH X 162 369 369 HOH HOH . 
D 4 HOH X 163 370 370 HOH HOH . 
D 4 HOH X 164 371 371 HOH HOH . 
D 4 HOH X 165 372 372 HOH HOH . 
D 4 HOH X 166 373 373 HOH HOH . 
D 4 HOH X 167 374 374 HOH HOH . 
D 4 HOH X 168 375 375 HOH HOH . 
D 4 HOH X 169 376 376 HOH HOH . 
D 4 HOH X 170 377 377 HOH HOH . 
D 4 HOH X 171 378 378 HOH HOH . 
D 4 HOH X 172 379 379 HOH HOH . 
D 4 HOH X 173 381 381 HOH HOH . 
D 4 HOH X 174 382 382 HOH HOH . 
D 4 HOH X 175 383 383 HOH HOH . 
D 4 HOH X 176 384 384 HOH HOH . 
D 4 HOH X 177 386 386 HOH HOH . 
D 4 HOH X 178 387 387 HOH HOH . 
D 4 HOH X 179 388 388 HOH HOH . 
D 4 HOH X 180 389 389 HOH HOH . 
D 4 HOH X 181 390 390 HOH HOH . 
D 4 HOH X 182 391 391 HOH HOH . 
D 4 HOH X 183 392 392 HOH HOH . 
D 4 HOH X 184 393 393 HOH HOH . 
D 4 HOH X 185 395 395 HOH HOH . 
D 4 HOH X 186 396 396 HOH HOH . 
D 4 HOH X 187 397 397 HOH HOH . 
D 4 HOH X 188 398 398 HOH HOH . 
D 4 HOH X 189 399 399 HOH HOH . 
D 4 HOH X 190 401 401 HOH HOH . 
D 4 HOH X 191 402 402 HOH HOH . 
D 4 HOH X 192 404 404 HOH HOH . 
D 4 HOH X 193 405 405 HOH HOH . 
D 4 HOH X 194 406 406 HOH HOH . 
D 4 HOH X 195 407 407 HOH HOH . 
D 4 HOH X 196 408 408 HOH HOH . 
D 4 HOH X 197 409 409 HOH HOH . 
D 4 HOH X 198 411 411 HOH HOH . 
D 4 HOH X 199 412 412 HOH HOH . 
D 4 HOH X 200 413 413 HOH HOH . 
D 4 HOH X 201 414 414 HOH HOH . 
D 4 HOH X 202 415 415 HOH HOH . 
D 4 HOH X 203 416 416 HOH HOH . 
D 4 HOH X 204 417 417 HOH HOH . 
D 4 HOH X 205 418 418 HOH HOH . 
D 4 HOH X 206 420 420 HOH HOH . 
D 4 HOH X 207 421 421 HOH HOH . 
D 4 HOH X 208 422 422 HOH HOH . 
D 4 HOH X 209 423 423 HOH HOH . 
D 4 HOH X 210 425 425 HOH HOH . 
D 4 HOH X 211 426 426 HOH HOH . 
D 4 HOH X 212 427 427 HOH HOH . 
D 4 HOH X 213 429 429 HOH HOH . 
D 4 HOH X 214 431 431 HOH HOH . 
D 4 HOH X 215 432 432 HOH HOH . 
D 4 HOH X 216 433 433 HOH HOH . 
D 4 HOH X 217 434 434 HOH HOH . 
D 4 HOH X 218 435 435 HOH HOH . 
D 4 HOH X 219 436 436 HOH HOH . 
D 4 HOH X 220 437 437 HOH HOH . 
D 4 HOH X 221 438 438 HOH HOH . 
D 4 HOH X 222 439 439 HOH HOH . 
D 4 HOH X 223 441 441 HOH HOH . 
D 4 HOH X 224 442 442 HOH HOH . 
D 4 HOH X 225 443 443 HOH HOH . 
D 4 HOH X 226 444 444 HOH HOH . 
D 4 HOH X 227 445 445 HOH HOH . 
D 4 HOH X 228 447 447 HOH HOH . 
D 4 HOH X 229 448 448 HOH HOH . 
D 4 HOH X 230 449 449 HOH HOH . 
D 4 HOH X 231 450 450 HOH HOH . 
D 4 HOH X 232 452 452 HOH HOH . 
D 4 HOH X 233 453 453 HOH HOH . 
D 4 HOH X 234 455 455 HOH HOH . 
D 4 HOH X 235 500 500 HOH HOH . 
D 4 HOH X 236 501 501 HOH HOH . 
D 4 HOH X 237 503 503 HOH HOH . 
D 4 HOH X 238 504 504 HOH HOH . 
D 4 HOH X 239 505 505 HOH HOH . 
D 4 HOH X 240 506 506 HOH HOH . 
D 4 HOH X 241 507 507 HOH HOH . 
D 4 HOH X 242 509 509 HOH HOH . 
D 4 HOH X 243 510 510 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IMD . . . C 3 22.654 77.11 28.72 1 7.05 ? N1 IMD 181 X 1 
HETATM 2 C C2 IMD . . . C 3 22.981 76.196 29.648 1 8.56 ? C2 IMD 181 X 1 
HETATM 3 N N3 IMD . . . C 3 21.845 75.658 30.125 1 7.5 ? N3 IMD 181 X 1 
HETATM 4 C C4 IMD . . . C 3 20.827 76.235 29.49 1 6.93 ? C4 IMD 181 X 1 
HETATM 5 C C5 IMD . . . C 3 21.283 77.144 28.645 1 7.99 ? C5 IMD 181 X 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#