data_1PM1 # _model_server_result.job_id tm7kx7O8m8kAH96R4MsEvg _model_server_result.datetime_utc '2024-11-05 05:09:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pm1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":181}' # _entry.id 1PM1 # _exptl.entry_id 1PM1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PM1 _cell.length_a 39.31 _cell.length_b 125.47 _cell.length_c 33.88 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PM1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 X CYS 2 1_555 A SG CYS 122 X CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf2 A SG CYS 40 X CYS 39 1_555 A SG CYS 171 X CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc1 A NE2 HIS 58 X HIS 57 1_555 B FE HEM . X HEM 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc2 B FE HEM . X HEM 180 1_555 C N1 IMD . X IMD 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 255 n y N1 C5 IMD sing 256 n y N1 HN1 IMD sing 257 n n C2 N3 IMD doub 258 n y C2 H2 IMD sing 259 n n N3 C4 IMD sing 260 n y N3 HN3 IMD sing 261 n n C4 C5 IMD doub 262 n y C4 H4 IMD sing 263 n n C5 H5 IMD sing 264 n n # _atom_sites.entry_id 1PM1 _atom_sites.fract_transf_matrix[1][1] 0.025439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM X 1 180 180 HEM HEM . C 3 IMD X 1 181 181 IMD IMD . D 4 HOH X 1 182 182 HOH HOH . D 4 HOH X 2 183 183 HOH HOH . D 4 HOH X 3 184 184 HOH HOH . D 4 HOH X 4 185 185 HOH HOH . D 4 HOH X 5 186 186 HOH HOH . D 4 HOH X 6 187 187 HOH HOH . D 4 HOH X 7 188 188 HOH HOH . D 4 HOH X 8 189 189 HOH HOH . D 4 HOH X 9 190 190 HOH HOH . D 4 HOH X 10 191 191 HOH HOH . D 4 HOH X 11 192 192 HOH HOH . D 4 HOH X 12 193 193 HOH HOH . D 4 HOH X 13 194 194 HOH HOH . D 4 HOH X 14 195 195 HOH HOH . D 4 HOH X 15 196 196 HOH HOH . D 4 HOH X 16 197 197 HOH HOH . D 4 HOH X 17 198 198 HOH HOH . D 4 HOH X 18 199 199 HOH HOH . D 4 HOH X 19 200 200 HOH HOH . D 4 HOH X 20 201 201 HOH HOH . D 4 HOH X 21 202 202 HOH HOH . D 4 HOH X 22 203 203 HOH HOH . D 4 HOH X 23 204 204 HOH HOH . D 4 HOH X 24 205 205 HOH HOH . D 4 HOH X 25 206 206 HOH HOH . D 4 HOH X 26 207 207 HOH HOH . D 4 HOH X 27 208 208 HOH HOH . D 4 HOH X 28 209 209 HOH HOH . D 4 HOH X 29 210 210 HOH HOH . D 4 HOH X 30 211 211 HOH HOH . D 4 HOH X 31 212 212 HOH HOH . D 4 HOH X 32 213 213 HOH HOH . D 4 HOH X 33 214 214 HOH HOH . D 4 HOH X 34 215 215 HOH HOH . D 4 HOH X 35 216 216 HOH HOH . D 4 HOH X 36 217 217 HOH HOH . D 4 HOH X 37 218 218 HOH HOH . D 4 HOH X 38 219 219 HOH HOH . D 4 HOH X 39 220 220 HOH HOH . D 4 HOH X 40 221 221 HOH HOH . D 4 HOH X 41 222 222 HOH HOH . D 4 HOH X 42 223 223 HOH HOH . D 4 HOH X 43 224 224 HOH HOH . D 4 HOH X 44 225 225 HOH HOH . D 4 HOH X 45 226 226 HOH HOH . D 4 HOH X 46 227 227 HOH HOH . D 4 HOH X 47 228 228 HOH HOH . D 4 HOH X 48 229 229 HOH HOH . D 4 HOH X 49 230 230 HOH HOH . D 4 HOH X 50 231 231 HOH HOH . D 4 HOH X 51 232 232 HOH HOH . D 4 HOH X 52 233 233 HOH HOH . D 4 HOH X 53 234 234 HOH HOH . D 4 HOH X 54 235 235 HOH HOH . D 4 HOH X 55 237 237 HOH HOH . D 4 HOH X 56 238 238 HOH HOH . D 4 HOH X 57 239 239 HOH HOH . D 4 HOH X 58 240 240 HOH HOH . D 4 HOH X 59 241 241 HOH HOH . D 4 HOH X 60 242 242 HOH HOH . D 4 HOH X 61 243 243 HOH HOH . D 4 HOH X 62 244 244 HOH HOH . D 4 HOH X 63 245 245 HOH HOH . D 4 HOH X 64 246 246 HOH HOH . D 4 HOH X 65 247 247 HOH HOH . D 4 HOH X 66 248 248 HOH HOH . D 4 HOH X 67 249 249 HOH HOH . D 4 HOH X 68 250 250 HOH HOH . D 4 HOH X 69 251 251 HOH HOH . D 4 HOH X 70 252 252 HOH HOH . D 4 HOH X 71 253 253 HOH HOH . D 4 HOH X 72 254 254 HOH HOH . D 4 HOH X 73 255 255 HOH HOH . D 4 HOH X 74 256 256 HOH HOH . D 4 HOH X 75 257 257 HOH HOH . D 4 HOH X 76 258 258 HOH HOH . D 4 HOH X 77 259 259 HOH HOH . D 4 HOH X 78 260 260 HOH HOH . D 4 HOH X 79 261 261 HOH HOH . D 4 HOH X 80 262 262 HOH HOH . D 4 HOH X 81 263 263 HOH HOH . D 4 HOH X 82 264 264 HOH HOH . D 4 HOH X 83 265 265 HOH HOH . D 4 HOH X 84 266 266 HOH HOH . D 4 HOH X 85 267 267 HOH HOH . D 4 HOH X 86 268 268 HOH HOH . D 4 HOH X 87 269 269 HOH HOH . D 4 HOH X 88 270 270 HOH HOH . D 4 HOH X 89 271 271 HOH HOH . D 4 HOH X 90 272 272 HOH HOH . D 4 HOH X 91 273 273 HOH HOH . D 4 HOH X 92 275 275 HOH HOH . D 4 HOH X 93 276 276 HOH HOH . D 4 HOH X 94 277 277 HOH HOH . D 4 HOH X 95 278 278 HOH HOH . D 4 HOH X 96 279 279 HOH HOH . D 4 HOH X 97 280 280 HOH HOH . D 4 HOH X 98 281 281 HOH HOH . D 4 HOH X 99 282 282 HOH HOH . D 4 HOH X 100 283 283 HOH HOH . D 4 HOH X 101 284 284 HOH HOH . D 4 HOH X 102 285 285 HOH HOH . D 4 HOH X 103 286 286 HOH HOH . D 4 HOH X 104 287 287 HOH HOH . D 4 HOH X 105 288 288 HOH HOH . D 4 HOH X 106 289 289 HOH HOH . D 4 HOH X 107 290 290 HOH HOH . D 4 HOH X 108 291 291 HOH HOH . D 4 HOH X 109 292 292 HOH HOH . D 4 HOH X 110 293 293 HOH HOH . D 4 HOH X 111 294 294 HOH HOH . D 4 HOH X 112 295 295 HOH HOH . D 4 HOH X 113 296 296 HOH HOH . D 4 HOH X 114 297 297 HOH HOH . D 4 HOH X 115 298 298 HOH HOH . D 4 HOH X 116 299 299 HOH HOH . D 4 HOH X 117 300 300 HOH HOH . D 4 HOH X 118 301 301 HOH HOH . D 4 HOH X 119 302 302 HOH HOH . D 4 HOH X 120 304 304 HOH HOH . D 4 HOH X 121 306 306 HOH HOH . D 4 HOH X 122 307 307 HOH HOH . D 4 HOH X 123 308 308 HOH HOH . D 4 HOH X 124 309 309 HOH HOH . D 4 HOH X 125 310 310 HOH HOH . D 4 HOH X 126 311 311 HOH HOH . D 4 HOH X 127 312 312 HOH HOH . D 4 HOH X 128 313 313 HOH HOH . D 4 HOH X 129 315 315 HOH HOH . D 4 HOH X 130 316 316 HOH HOH . D 4 HOH X 131 317 317 HOH HOH . D 4 HOH X 132 318 318 HOH HOH . D 4 HOH X 133 319 319 HOH HOH . D 4 HOH X 134 320 320 HOH HOH . D 4 HOH X 135 321 321 HOH HOH . D 4 HOH X 136 322 322 HOH HOH . D 4 HOH X 137 323 323 HOH HOH . D 4 HOH X 138 324 324 HOH HOH . D 4 HOH X 139 325 325 HOH HOH . D 4 HOH X 140 326 326 HOH HOH . D 4 HOH X 141 327 327 HOH HOH . D 4 HOH X 142 328 328 HOH HOH . D 4 HOH X 143 329 329 HOH HOH . D 4 HOH X 144 330 330 HOH HOH . D 4 HOH X 145 331 331 HOH HOH . D 4 HOH X 146 332 332 HOH HOH . D 4 HOH X 147 333 333 HOH HOH . D 4 HOH X 148 334 334 HOH HOH . D 4 HOH X 149 335 335 HOH HOH . D 4 HOH X 150 336 336 HOH HOH . D 4 HOH X 151 337 337 HOH HOH . D 4 HOH X 152 338 338 HOH HOH . D 4 HOH X 153 339 339 HOH HOH . D 4 HOH X 154 340 340 HOH HOH . D 4 HOH X 155 341 341 HOH HOH . D 4 HOH X 156 343 343 HOH HOH . D 4 HOH X 157 344 344 HOH HOH . D 4 HOH X 158 345 345 HOH HOH . D 4 HOH X 159 365 365 HOH HOH . D 4 HOH X 160 367 367 HOH HOH . D 4 HOH X 161 368 368 HOH HOH . D 4 HOH X 162 369 369 HOH HOH . D 4 HOH X 163 370 370 HOH HOH . D 4 HOH X 164 371 371 HOH HOH . D 4 HOH X 165 372 372 HOH HOH . D 4 HOH X 166 373 373 HOH HOH . D 4 HOH X 167 374 374 HOH HOH . D 4 HOH X 168 375 375 HOH HOH . D 4 HOH X 169 376 376 HOH HOH . D 4 HOH X 170 377 377 HOH HOH . D 4 HOH X 171 378 378 HOH HOH . D 4 HOH X 172 379 379 HOH HOH . D 4 HOH X 173 381 381 HOH HOH . D 4 HOH X 174 382 382 HOH HOH . D 4 HOH X 175 383 383 HOH HOH . D 4 HOH X 176 384 384 HOH HOH . D 4 HOH X 177 386 386 HOH HOH . D 4 HOH X 178 387 387 HOH HOH . D 4 HOH X 179 388 388 HOH HOH . D 4 HOH X 180 389 389 HOH HOH . D 4 HOH X 181 390 390 HOH HOH . D 4 HOH X 182 391 391 HOH HOH . D 4 HOH X 183 392 392 HOH HOH . D 4 HOH X 184 393 393 HOH HOH . D 4 HOH X 185 395 395 HOH HOH . D 4 HOH X 186 396 396 HOH HOH . D 4 HOH X 187 397 397 HOH HOH . D 4 HOH X 188 398 398 HOH HOH . D 4 HOH X 189 399 399 HOH HOH . D 4 HOH X 190 401 401 HOH HOH . D 4 HOH X 191 402 402 HOH HOH . D 4 HOH X 192 404 404 HOH HOH . D 4 HOH X 193 405 405 HOH HOH . D 4 HOH X 194 406 406 HOH HOH . D 4 HOH X 195 407 407 HOH HOH . D 4 HOH X 196 408 408 HOH HOH . D 4 HOH X 197 409 409 HOH HOH . D 4 HOH X 198 411 411 HOH HOH . D 4 HOH X 199 412 412 HOH HOH . D 4 HOH X 200 413 413 HOH HOH . D 4 HOH X 201 414 414 HOH HOH . D 4 HOH X 202 415 415 HOH HOH . D 4 HOH X 203 416 416 HOH HOH . D 4 HOH X 204 417 417 HOH HOH . D 4 HOH X 205 418 418 HOH HOH . D 4 HOH X 206 420 420 HOH HOH . D 4 HOH X 207 421 421 HOH HOH . D 4 HOH X 208 422 422 HOH HOH . D 4 HOH X 209 423 423 HOH HOH . D 4 HOH X 210 425 425 HOH HOH . D 4 HOH X 211 426 426 HOH HOH . D 4 HOH X 212 427 427 HOH HOH . D 4 HOH X 213 429 429 HOH HOH . D 4 HOH X 214 431 431 HOH HOH . D 4 HOH X 215 432 432 HOH HOH . D 4 HOH X 216 433 433 HOH HOH . D 4 HOH X 217 434 434 HOH HOH . D 4 HOH X 218 435 435 HOH HOH . D 4 HOH X 219 436 436 HOH HOH . D 4 HOH X 220 437 437 HOH HOH . D 4 HOH X 221 438 438 HOH HOH . D 4 HOH X 222 439 439 HOH HOH . D 4 HOH X 223 441 441 HOH HOH . D 4 HOH X 224 442 442 HOH HOH . D 4 HOH X 225 443 443 HOH HOH . D 4 HOH X 226 444 444 HOH HOH . D 4 HOH X 227 445 445 HOH HOH . D 4 HOH X 228 447 447 HOH HOH . D 4 HOH X 229 448 448 HOH HOH . D 4 HOH X 230 449 449 HOH HOH . D 4 HOH X 231 450 450 HOH HOH . D 4 HOH X 232 452 452 HOH HOH . D 4 HOH X 233 453 453 HOH HOH . D 4 HOH X 234 455 455 HOH HOH . D 4 HOH X 235 500 500 HOH HOH . D 4 HOH X 236 501 501 HOH HOH . D 4 HOH X 237 503 503 HOH HOH . D 4 HOH X 238 504 504 HOH HOH . D 4 HOH X 239 505 505 HOH HOH . D 4 HOH X 240 506 506 HOH HOH . D 4 HOH X 241 507 507 HOH HOH . D 4 HOH X 242 509 509 HOH HOH . D 4 HOH X 243 510 510 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . C 3 22.654 77.11 28.72 1 7.05 ? N1 IMD 181 X 1 HETATM 2 C C2 IMD . . . C 3 22.981 76.196 29.648 1 8.56 ? C2 IMD 181 X 1 HETATM 3 N N3 IMD . . . C 3 21.845 75.658 30.125 1 7.5 ? N3 IMD 181 X 1 HETATM 4 C C4 IMD . . . C 3 20.827 76.235 29.49 1 6.93 ? C4 IMD 181 X 1 HETATM 5 C C5 IMD . . . C 3 21.283 77.144 28.645 1 7.99 ? C5 IMD 181 X 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #