data_1PM9 # _model_server_result.job_id 0F5pzcAIr1AGhWufIB_Ryg _model_server_result.datetime_utc '2024-10-18 05:23:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pm9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":200}' # _entry.id 1PM9 # _exptl.entry_id 1PM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PM9 _cell.length_a 71.58 _cell.length_b 76.46 _cell.length_c 66.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 26 A HIS 26 1_555 C MN MN3 . A MN3 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc2 A NE2 HIS 74 A HIS 74 1_555 C MN MN3 . A MN3 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc3 A OD2 ASP 159 A ASP 159 1_555 C MN MN3 . A MN3 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc4 A NE2 HIS 163 A HIS 163 1_555 C MN MN3 . A MN3 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc5 C MN MN3 . A MN3 200 1_555 E O HOH . A HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc6 B NE2 HIS 26 B HIS 26 1_555 D MN MN3 . B MN3 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc7 B NE2 HIS 74 B HIS 74 1_555 D MN MN3 . B MN3 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc8 B OD2 ASP 159 B ASP 159 1_555 D MN MN3 . B MN3 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc9 B NE2 HIS 163 B HIS 163 1_555 D MN MN3 . B MN3 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc10 D MN MN3 . B MN3 200 1_555 F O HOH . B HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? # _chem_comp.formula 'Mn 3' _chem_comp.formula_weight 54.938 _chem_comp.id MN3 _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1PM9 _atom_sites.fract_transf_matrix[1][1] 0.01397 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN3 A 1 200 200 MN3 MN3 . D 2 MN3 B 1 200 200 MN3 MN3 . E 3 HOH A 1 201 201 HOH HOH . E 3 HOH A 2 204 204 HOH HOH . E 3 HOH A 3 205 205 HOH HOH . E 3 HOH A 4 207 207 HOH HOH . E 3 HOH A 5 209 209 HOH HOH . E 3 HOH A 6 210 210 HOH HOH . E 3 HOH A 7 212 212 HOH HOH . E 3 HOH A 8 215 215 HOH HOH . E 3 HOH A 9 216 216 HOH HOH . E 3 HOH A 10 217 217 HOH HOH . E 3 HOH A 11 218 218 HOH HOH . E 3 HOH A 12 219 219 HOH HOH . E 3 HOH A 13 220 220 HOH HOH . E 3 HOH A 14 222 222 HOH HOH . E 3 HOH A 15 224 224 HOH HOH . E 3 HOH A 16 226 226 HOH HOH . E 3 HOH A 17 227 227 HOH HOH . E 3 HOH A 18 232 232 HOH HOH . E 3 HOH A 19 233 233 HOH HOH . E 3 HOH A 20 235 235 HOH HOH . E 3 HOH A 21 236 236 HOH HOH . E 3 HOH A 22 242 242 HOH HOH . E 3 HOH A 23 243 243 HOH HOH . E 3 HOH A 24 244 244 HOH HOH . E 3 HOH A 25 245 245 HOH HOH . E 3 HOH A 26 246 246 HOH HOH . E 3 HOH A 27 247 247 HOH HOH . E 3 HOH A 28 248 248 HOH HOH . E 3 HOH A 29 251 251 HOH HOH . E 3 HOH A 30 252 252 HOH HOH . E 3 HOH A 31 253 253 HOH HOH . E 3 HOH A 32 254 254 HOH HOH . E 3 HOH A 33 255 255 HOH HOH . E 3 HOH A 34 256 256 HOH HOH . E 3 HOH A 35 257 257 HOH HOH . E 3 HOH A 36 260 260 HOH HOH . E 3 HOH A 37 261 261 HOH HOH . E 3 HOH A 38 262 262 HOH HOH . E 3 HOH A 39 264 264 HOH HOH . E 3 HOH A 40 269 269 HOH HOH . E 3 HOH A 41 270 270 HOH HOH . E 3 HOH A 42 271 271 HOH HOH . E 3 HOH A 43 274 274 HOH HOH . E 3 HOH A 44 275 275 HOH HOH . E 3 HOH A 45 276 276 HOH HOH . E 3 HOH A 46 279 279 HOH HOH . E 3 HOH A 47 280 280 HOH HOH . E 3 HOH A 48 281 281 HOH HOH . E 3 HOH A 49 282 282 HOH HOH . E 3 HOH A 50 283 283 HOH HOH . E 3 HOH A 51 284 284 HOH HOH . E 3 HOH A 52 285 285 HOH HOH . E 3 HOH A 53 286 286 HOH HOH . E 3 HOH A 54 288 288 HOH HOH . E 3 HOH A 55 289 289 HOH HOH . E 3 HOH A 56 291 291 HOH HOH . E 3 HOH A 57 292 292 HOH HOH . E 3 HOH A 58 294 294 HOH HOH . E 3 HOH A 59 296 296 HOH HOH . E 3 HOH A 60 298 298 HOH HOH . E 3 HOH A 61 302 302 HOH HOH . E 3 HOH A 62 304 304 HOH HOH . E 3 HOH A 63 305 305 HOH HOH . E 3 HOH A 64 306 306 HOH HOH . E 3 HOH A 65 307 307 HOH HOH . E 3 HOH A 66 309 309 HOH HOH . E 3 HOH A 67 310 310 HOH HOH . E 3 HOH A 68 311 311 HOH HOH . E 3 HOH A 69 312 312 HOH HOH . E 3 HOH A 70 314 314 HOH HOH . E 3 HOH A 71 318 318 HOH HOH . E 3 HOH A 72 319 319 HOH HOH . E 3 HOH A 73 320 320 HOH HOH . E 3 HOH A 74 321 321 HOH HOH . E 3 HOH A 75 323 323 HOH HOH . E 3 HOH A 76 327 327 HOH HOH . E 3 HOH A 77 328 328 HOH HOH . E 3 HOH A 78 330 330 HOH HOH . E 3 HOH A 79 333 333 HOH HOH . E 3 HOH A 80 336 336 HOH HOH . E 3 HOH A 81 338 338 HOH HOH . E 3 HOH A 82 339 339 HOH HOH . E 3 HOH A 83 341 341 HOH HOH . E 3 HOH A 84 345 345 HOH HOH . E 3 HOH A 85 346 346 HOH HOH . E 3 HOH A 86 348 348 HOH HOH . E 3 HOH A 87 349 349 HOH HOH . E 3 HOH A 88 350 350 HOH HOH . E 3 HOH A 89 354 354 HOH HOH . E 3 HOH A 90 357 357 HOH HOH . E 3 HOH A 91 359 359 HOH HOH . E 3 HOH A 92 360 360 HOH HOH . E 3 HOH A 93 362 362 HOH HOH . E 3 HOH A 94 363 363 HOH HOH . E 3 HOH A 95 367 367 HOH HOH . E 3 HOH A 96 372 372 HOH HOH . E 3 HOH A 97 373 373 HOH HOH . E 3 HOH A 98 374 374 HOH HOH . E 3 HOH A 99 379 379 HOH HOH . E 3 HOH A 100 380 380 HOH HOH . E 3 HOH A 101 383 383 HOH HOH . E 3 HOH A 102 384 384 HOH HOH . E 3 HOH A 103 385 385 HOH HOH . E 3 HOH A 104 388 388 HOH HOH . E 3 HOH A 105 389 389 HOH HOH . E 3 HOH A 106 391 391 HOH HOH . E 3 HOH A 107 392 392 HOH HOH . E 3 HOH A 108 393 393 HOH HOH . E 3 HOH A 109 394 394 HOH HOH . E 3 HOH A 110 395 395 HOH HOH . E 3 HOH A 111 396 396 HOH HOH . E 3 HOH A 112 400 400 HOH HOH . E 3 HOH A 113 401 401 HOH HOH . E 3 HOH A 114 402 402 HOH HOH . E 3 HOH A 115 403 403 HOH HOH . E 3 HOH A 116 408 408 HOH HOH . E 3 HOH A 117 409 409 HOH HOH . F 3 HOH B 1 202 202 HOH HOH . F 3 HOH B 2 203 203 HOH HOH . F 3 HOH B 3 206 206 HOH HOH . F 3 HOH B 4 208 208 HOH HOH . F 3 HOH B 5 211 211 HOH HOH . F 3 HOH B 6 213 213 HOH HOH . F 3 HOH B 7 214 214 HOH HOH . F 3 HOH B 8 221 221 HOH HOH . F 3 HOH B 9 223 223 HOH HOH . F 3 HOH B 10 225 225 HOH HOH . F 3 HOH B 11 228 228 HOH HOH . F 3 HOH B 12 229 229 HOH HOH . F 3 HOH B 13 230 230 HOH HOH . F 3 HOH B 14 231 231 HOH HOH . F 3 HOH B 15 234 234 HOH HOH . F 3 HOH B 16 237 237 HOH HOH . F 3 HOH B 17 238 238 HOH HOH . F 3 HOH B 18 239 239 HOH HOH . F 3 HOH B 19 240 240 HOH HOH . F 3 HOH B 20 241 241 HOH HOH . F 3 HOH B 21 249 249 HOH HOH . F 3 HOH B 22 250 250 HOH HOH . F 3 HOH B 23 258 258 HOH HOH . F 3 HOH B 24 259 259 HOH HOH . F 3 HOH B 25 263 263 HOH HOH . F 3 HOH B 26 265 265 HOH HOH . F 3 HOH B 27 266 266 HOH HOH . F 3 HOH B 28 267 267 HOH HOH . F 3 HOH B 29 268 268 HOH HOH . F 3 HOH B 30 272 272 HOH HOH . F 3 HOH B 31 273 273 HOH HOH . F 3 HOH B 32 277 277 HOH HOH . F 3 HOH B 33 278 278 HOH HOH . F 3 HOH B 34 287 287 HOH HOH . F 3 HOH B 35 290 290 HOH HOH . F 3 HOH B 36 293 293 HOH HOH . F 3 HOH B 37 295 295 HOH HOH . F 3 HOH B 38 297 297 HOH HOH . F 3 HOH B 39 299 299 HOH HOH . F 3 HOH B 40 300 300 HOH HOH . F 3 HOH B 41 301 301 HOH HOH . F 3 HOH B 42 303 303 HOH HOH . F 3 HOH B 43 308 308 HOH HOH . F 3 HOH B 44 313 313 HOH HOH . F 3 HOH B 45 315 315 HOH HOH . F 3 HOH B 46 316 316 HOH HOH . F 3 HOH B 47 317 317 HOH HOH . F 3 HOH B 48 322 322 HOH HOH . F 3 HOH B 49 324 324 HOH HOH . F 3 HOH B 50 325 325 HOH HOH . F 3 HOH B 51 326 326 HOH HOH . F 3 HOH B 52 329 329 HOH HOH . F 3 HOH B 53 331 331 HOH HOH . F 3 HOH B 54 332 332 HOH HOH . F 3 HOH B 55 334 334 HOH HOH . F 3 HOH B 56 335 335 HOH HOH . F 3 HOH B 57 337 337 HOH HOH . F 3 HOH B 58 340 340 HOH HOH . F 3 HOH B 59 342 342 HOH HOH . F 3 HOH B 60 343 343 HOH HOH . F 3 HOH B 61 344 344 HOH HOH . F 3 HOH B 62 347 347 HOH HOH . F 3 HOH B 63 351 351 HOH HOH . F 3 HOH B 64 352 352 HOH HOH . F 3 HOH B 65 353 353 HOH HOH . F 3 HOH B 66 355 355 HOH HOH . F 3 HOH B 67 356 356 HOH HOH . F 3 HOH B 68 358 358 HOH HOH . F 3 HOH B 69 361 361 HOH HOH . F 3 HOH B 70 364 364 HOH HOH . F 3 HOH B 71 365 365 HOH HOH . F 3 HOH B 72 366 366 HOH HOH . F 3 HOH B 73 368 368 HOH HOH . F 3 HOH B 74 369 369 HOH HOH . F 3 HOH B 75 370 370 HOH HOH . F 3 HOH B 76 371 371 HOH HOH . F 3 HOH B 77 375 375 HOH HOH . F 3 HOH B 78 376 376 HOH HOH . F 3 HOH B 79 377 377 HOH HOH . F 3 HOH B 80 378 378 HOH HOH . F 3 HOH B 81 381 381 HOH HOH . F 3 HOH B 82 382 382 HOH HOH . F 3 HOH B 83 386 386 HOH HOH . F 3 HOH B 84 387 387 HOH HOH . F 3 HOH B 85 390 390 HOH HOH . F 3 HOH B 86 397 397 HOH HOH . F 3 HOH B 87 398 398 HOH HOH . F 3 HOH B 88 399 399 HOH HOH . F 3 HOH B 89 404 404 HOH HOH . F 3 HOH B 90 405 405 HOH HOH . F 3 HOH B 91 406 406 HOH HOH . F 3 HOH B 92 407 407 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN3 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 19.541 _atom_site.Cartn_y -4.229 _atom_site.Cartn_z 23.981 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN3 _atom_site.auth_seq_id 200 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #