data_1PML # _model_server_result.job_id 9fKTlQJ83MYvIz7hQ_D7gA _model_server_result.datetime_utc '2024-12-30 14:35:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pml # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":289}' # _entry.id 1PML # _exptl.entry_id 1PML _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.7 _cell.angle_gamma 90 _cell.entry_id 1PML _cell.length_a 54.8 _cell.length_b 63.58 _cell.length_c 46.58 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PML _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 1 1_555 A SG CYS 84 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf2 A SG CYS 24 A CYS 22 1_555 A SG CYS 66 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? disulf ? disulf3 A SG CYS 55 A CYS 51 1_555 A SG CYS 79 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf4 B SG CYS 3 B CYS 1 1_555 B SG CYS 84 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 B SG CYS 24 B CYS 22 1_555 B SG CYS 66 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf6 B SG CYS 55 B CYS 51 1_555 B SG CYS 79 B CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf7 C SG CYS 3 C CYS 1 1_555 C SG CYS 84 C CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf8 C SG CYS 24 C CYS 22 1_555 C SG CYS 66 C CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 C SG CYS 55 C CYS 51 1_555 C SG CYS 79 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1PML _atom_sites.fract_transf_matrix[1][1] 0.018248 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005475 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CL A 1 289 289 CL CL . E 2 CL B 1 290 290 CL CL . F 2 CL C 1 291 291 CL CL . G 3 HOH A 1 301 301 HOH HOH . G 3 HOH A 2 304 304 HOH HOH . G 3 HOH A 3 306 306 HOH HOH . G 3 HOH A 4 309 309 HOH HOH . G 3 HOH A 5 310 310 HOH HOH . G 3 HOH A 6 322 322 HOH HOH . G 3 HOH A 7 324 324 HOH HOH . G 3 HOH A 8 325 325 HOH HOH . G 3 HOH A 9 326 326 HOH HOH . G 3 HOH A 10 328 328 HOH HOH . G 3 HOH A 11 329 329 HOH HOH . G 3 HOH A 12 332 332 HOH HOH . G 3 HOH A 13 337 337 HOH HOH . G 3 HOH A 14 343 343 HOH HOH . G 3 HOH A 15 353 353 HOH HOH . G 3 HOH A 16 355 355 HOH HOH . G 3 HOH A 17 358 358 HOH HOH . G 3 HOH A 18 363 363 HOH HOH . G 3 HOH A 19 370 370 HOH HOH . G 3 HOH A 20 371 371 HOH HOH . G 3 HOH A 21 372 372 HOH HOH . G 3 HOH A 22 376 376 HOH HOH . G 3 HOH A 23 378 378 HOH HOH . G 3 HOH A 24 380 380 HOH HOH . G 3 HOH A 25 381 381 HOH HOH . G 3 HOH A 26 385 385 HOH HOH . G 3 HOH A 27 391 391 HOH HOH . G 3 HOH A 28 399 399 HOH HOH . G 3 HOH A 29 408 408 HOH HOH . G 3 HOH A 30 410 410 HOH HOH . G 3 HOH A 31 412 412 HOH HOH . G 3 HOH A 32 414 414 HOH HOH . G 3 HOH A 33 417 417 HOH HOH . G 3 HOH A 34 418 418 HOH HOH . G 3 HOH A 35 424 424 HOH HOH . G 3 HOH A 36 430 430 HOH HOH . G 3 HOH A 37 436 436 HOH HOH . G 3 HOH A 38 437 437 HOH HOH . G 3 HOH A 39 438 438 HOH HOH . G 3 HOH A 40 439 439 HOH HOH . G 3 HOH A 41 458 458 HOH HOH . G 3 HOH A 42 474 474 HOH HOH . G 3 HOH A 43 487 487 HOH HOH . G 3 HOH A 44 489 489 HOH HOH . G 3 HOH A 45 499 499 HOH HOH . G 3 HOH A 46 506 506 HOH HOH . G 3 HOH A 47 521 521 HOH HOH . G 3 HOH A 48 527 527 HOH HOH . G 3 HOH A 49 531 531 HOH HOH . G 3 HOH A 50 549 549 HOH HOH . G 3 HOH A 51 554 554 HOH HOH . G 3 HOH A 52 575 575 HOH HOH . G 3 HOH A 53 577 577 HOH HOH . G 3 HOH A 54 580 580 HOH HOH . G 3 HOH A 55 592 592 HOH HOH . G 3 HOH A 56 595 595 HOH HOH . G 3 HOH A 57 597 597 HOH HOH . G 3 HOH A 58 613 613 HOH HOH . G 3 HOH A 59 617 617 HOH HOH . G 3 HOH A 60 619 619 HOH HOH . G 3 HOH A 61 623 623 HOH HOH . G 3 HOH A 62 635 635 HOH HOH . G 3 HOH A 63 639 639 HOH HOH . G 3 HOH A 64 646 646 HOH HOH . G 3 HOH A 65 652 652 HOH HOH . G 3 HOH A 66 686 686 HOH HOH . G 3 HOH A 67 691 691 HOH HOH . G 3 HOH A 68 723 723 HOH HOH . G 3 HOH A 69 746 746 HOH HOH . G 3 HOH A 70 747 747 HOH HOH . G 3 HOH A 71 759 759 HOH HOH . G 3 HOH A 72 770 770 HOH HOH . G 3 HOH A 73 810 810 HOH HOH . G 3 HOH A 74 815 815 HOH HOH . G 3 HOH A 75 821 821 HOH HOH . H 3 HOH B 1 302 302 HOH HOH . H 3 HOH B 2 307 307 HOH HOH . H 3 HOH B 3 308 308 HOH HOH . H 3 HOH B 4 318 318 HOH HOH . H 3 HOH B 5 321 321 HOH HOH . H 3 HOH B 6 327 327 HOH HOH . H 3 HOH B 7 334 334 HOH HOH . H 3 HOH B 8 341 341 HOH HOH . H 3 HOH B 9 342 342 HOH HOH . H 3 HOH B 10 346 346 HOH HOH . H 3 HOH B 11 359 359 HOH HOH . H 3 HOH B 12 365 365 HOH HOH . H 3 HOH B 13 367 367 HOH HOH . H 3 HOH B 14 375 375 HOH HOH . H 3 HOH B 15 379 379 HOH HOH . H 3 HOH B 16 384 384 HOH HOH . H 3 HOH B 17 387 387 HOH HOH . H 3 HOH B 18 390 390 HOH HOH . H 3 HOH B 19 394 394 HOH HOH . H 3 HOH B 20 398 398 HOH HOH . H 3 HOH B 21 407 407 HOH HOH . H 3 HOH B 22 413 413 HOH HOH . H 3 HOH B 23 416 416 HOH HOH . H 3 HOH B 24 423 423 HOH HOH . H 3 HOH B 25 443 443 HOH HOH . H 3 HOH B 26 445 445 HOH HOH . H 3 HOH B 27 455 455 HOH HOH . H 3 HOH B 28 461 461 HOH HOH . H 3 HOH B 29 470 470 HOH HOH . H 3 HOH B 30 472 472 HOH HOH . H 3 HOH B 31 503 503 HOH HOH . H 3 HOH B 32 504 504 HOH HOH . H 3 HOH B 33 510 510 HOH HOH . H 3 HOH B 34 552 552 HOH HOH . H 3 HOH B 35 572 572 HOH HOH . H 3 HOH B 36 591 591 HOH HOH . H 3 HOH B 37 598 598 HOH HOH . H 3 HOH B 38 599 599 HOH HOH . H 3 HOH B 39 603 603 HOH HOH . H 3 HOH B 40 618 618 HOH HOH . H 3 HOH B 41 645 645 HOH HOH . H 3 HOH B 42 656 656 HOH HOH . H 3 HOH B 43 660 660 HOH HOH . H 3 HOH B 44 685 685 HOH HOH . H 3 HOH B 45 696 696 HOH HOH . H 3 HOH B 46 703 703 HOH HOH . H 3 HOH B 47 736 736 HOH HOH . H 3 HOH B 48 800 800 HOH HOH . H 3 HOH B 49 802 802 HOH HOH . H 3 HOH B 50 822 822 HOH HOH . I 3 HOH C 1 305 305 HOH HOH . I 3 HOH C 2 311 311 HOH HOH . I 3 HOH C 3 312 312 HOH HOH . I 3 HOH C 4 313 313 HOH HOH . I 3 HOH C 5 314 314 HOH HOH . I 3 HOH C 6 315 315 HOH HOH . I 3 HOH C 7 316 316 HOH HOH . I 3 HOH C 8 317 317 HOH HOH . I 3 HOH C 9 320 320 HOH HOH . I 3 HOH C 10 330 330 HOH HOH . I 3 HOH C 11 333 333 HOH HOH . I 3 HOH C 12 339 339 HOH HOH . I 3 HOH C 13 340 340 HOH HOH . I 3 HOH C 14 344 344 HOH HOH . I 3 HOH C 15 345 345 HOH HOH . I 3 HOH C 16 347 347 HOH HOH . I 3 HOH C 17 348 348 HOH HOH . I 3 HOH C 18 349 349 HOH HOH . I 3 HOH C 19 350 350 HOH HOH . I 3 HOH C 20 352 352 HOH HOH . I 3 HOH C 21 360 360 HOH HOH . I 3 HOH C 22 364 364 HOH HOH . I 3 HOH C 23 373 373 HOH HOH . I 3 HOH C 24 374 374 HOH HOH . I 3 HOH C 25 377 377 HOH HOH . I 3 HOH C 26 386 386 HOH HOH . I 3 HOH C 27 397 397 HOH HOH . I 3 HOH C 28 400 400 HOH HOH . I 3 HOH C 29 404 404 HOH HOH . I 3 HOH C 30 411 411 HOH HOH . I 3 HOH C 31 422 422 HOH HOH . I 3 HOH C 32 427 427 HOH HOH . I 3 HOH C 33 429 429 HOH HOH . I 3 HOH C 34 432 432 HOH HOH . I 3 HOH C 35 433 433 HOH HOH . I 3 HOH C 36 440 440 HOH HOH . I 3 HOH C 37 442 442 HOH HOH . I 3 HOH C 38 449 449 HOH HOH . I 3 HOH C 39 460 460 HOH HOH . I 3 HOH C 40 465 465 HOH HOH . I 3 HOH C 41 477 477 HOH HOH . I 3 HOH C 42 501 501 HOH HOH . I 3 HOH C 43 507 507 HOH HOH . I 3 HOH C 44 512 512 HOH HOH . I 3 HOH C 45 526 526 HOH HOH . I 3 HOH C 46 530 530 HOH HOH . I 3 HOH C 47 536 536 HOH HOH . I 3 HOH C 48 557 557 HOH HOH . I 3 HOH C 49 564 564 HOH HOH . I 3 HOH C 50 573 573 HOH HOH . I 3 HOH C 51 574 574 HOH HOH . I 3 HOH C 52 583 583 HOH HOH . I 3 HOH C 53 587 587 HOH HOH . I 3 HOH C 54 588 588 HOH HOH . I 3 HOH C 55 616 616 HOH HOH . I 3 HOH C 56 708 708 HOH HOH . I 3 HOH C 57 731 731 HOH HOH . I 3 HOH C 58 762 762 HOH HOH . I 3 HOH C 59 766 766 HOH HOH . I 3 HOH C 60 767 767 HOH HOH . I 3 HOH C 61 774 774 HOH HOH . I 3 HOH C 62 779 779 HOH HOH . I 3 HOH C 63 780 780 HOH HOH . I 3 HOH C 64 787 787 HOH HOH . I 3 HOH C 65 795 795 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -30.105 _atom_site.Cartn_y -34.638 _atom_site.Cartn_z -15.672 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 289 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #