data_1PMN # _model_server_result.job_id 9bOHGa11G2F1Cc_Kne0vNg _model_server_result.datetime_utc '2024-11-22 12:21:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 1PMN # _exptl.entry_id 1PMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 485.452 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYCLOPROPYL-{4-[5-(3,4-DICHLOROPHENYL)-2-[(1-METHYL)-PIPERIDIN]-4-YL-3-PROPYL-3H-IMIDAZOL-4-YL]-PYRIMIDIN-2-YL}AMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PMN _cell.length_a 53.075 _cell.length_b 71.341 _cell.length_c 107.174 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H30 Cl2 N6' _chem_comp.formula_weight 485.452 _chem_comp.id 984 _chem_comp.mon_nstd_flag . _chem_comp.name CYCLOPROPYL-{4-[5-(3,4-DICHLOROPHENYL)-2-[(1-METHYL)-PIPERIDIN]-4-YL-3-PROPYL-3H-IMIDAZOL-4-YL]-PYRIMIDIN-2-YL}AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 984 sing 1 n y N1 C5 984 sing 2 n y N1 C6 984 sing 3 n n C2 N3 984 doub 4 n y C2 C16 984 sing 5 n n N3 C4 984 sing 6 n y C4 C5 984 doub 7 n y C4 C35 984 sing 8 n y C5 C36 984 sing 9 n y C6 C7 984 sing 10 n n C6 HC61 984 sing 11 n n C6 HC62 984 sing 12 n n C7 C10 984 sing 13 n n C7 HC71 984 sing 14 n n C7 HC72 984 sing 15 n n C10 H101 984 sing 16 n n C10 H102 984 sing 17 n n C10 H103 984 sing 18 n n C16 C17 984 sing 19 n n C16 C21 984 sing 20 n n C16 H16 984 sing 21 n n C17 C18 984 sing 22 n n C17 H171 984 sing 23 n n C17 H172 984 sing 24 n n C18 N19 984 sing 25 n n C18 H181 984 sing 26 n n C18 H182 984 sing 27 n n N19 C20 984 sing 28 n n N19 C31 984 sing 29 n n C20 C21 984 sing 30 n n C20 H201 984 sing 31 n n C20 H202 984 sing 32 n n C21 H211 984 sing 33 n n C21 H212 984 sing 34 n n C31 H311 984 sing 35 n n C31 H312 984 sing 36 n n C31 H313 984 sing 37 n n C35 C37 984 doub 38 n y C35 C41 984 sing 39 n y C36 C47 984 doub 40 n y C36 N51 984 sing 41 n y C37 C38 984 sing 42 n y C37 H37 984 sing 43 n n C38 C39 984 doub 44 n y C38 CL45 984 sing 45 n n C39 C40 984 sing 46 n y C39 CL46 984 sing 47 n n C40 C41 984 doub 48 n y C40 H40 984 sing 49 n n C41 H41 984 sing 50 n n C47 C48 984 sing 51 n y C47 H47 984 sing 52 n n C48 N49 984 doub 53 n y C48 H48 984 sing 54 n n N49 C50 984 sing 55 n y C50 N51 984 doub 56 n y C50 N54 984 sing 57 n n N54 C55 984 sing 58 n n N54 H54 984 sing 59 n n C55 C56 984 sing 60 n n C55 C57 984 sing 61 n n C55 H55 984 sing 62 n n C56 C57 984 sing 63 n n C56 H561 984 sing 64 n n C56 H562 984 sing 65 n n C57 H571 984 sing 66 n n C57 H572 984 sing 67 n n # _atom_sites.entry_id 1PMN _atom_sites.fract_transf_matrix[1][1] 0.018841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 984 A 1 501 501 984 984 . C 3 HOH A 1 601 601 HOH HOH . C 3 HOH A 2 602 602 HOH HOH . C 3 HOH A 3 603 603 HOH HOH . C 3 HOH A 4 604 604 HOH HOH . C 3 HOH A 5 605 605 HOH HOH . C 3 HOH A 6 606 606 HOH HOH . C 3 HOH A 7 607 607 HOH HOH . C 3 HOH A 8 608 608 HOH HOH . C 3 HOH A 9 609 609 HOH HOH . C 3 HOH A 10 610 610 HOH HOH . C 3 HOH A 11 611 611 HOH HOH . C 3 HOH A 12 612 612 HOH HOH . C 3 HOH A 13 613 613 HOH HOH . C 3 HOH A 14 614 614 HOH HOH . C 3 HOH A 15 615 615 HOH HOH . C 3 HOH A 16 616 616 HOH HOH . C 3 HOH A 17 617 617 HOH HOH . C 3 HOH A 18 618 618 HOH HOH . C 3 HOH A 19 619 619 HOH HOH . C 3 HOH A 20 620 620 HOH HOH . C 3 HOH A 21 621 621 HOH HOH . C 3 HOH A 22 623 623 HOH HOH . C 3 HOH A 23 624 624 HOH HOH . C 3 HOH A 24 625 625 HOH HOH . C 3 HOH A 25 626 626 HOH HOH . C 3 HOH A 26 627 627 HOH HOH . C 3 HOH A 27 628 628 HOH HOH . C 3 HOH A 28 629 629 HOH HOH . C 3 HOH A 29 630 630 HOH HOH . C 3 HOH A 30 631 631 HOH HOH . C 3 HOH A 31 632 632 HOH HOH . C 3 HOH A 32 633 633 HOH HOH . C 3 HOH A 33 634 634 HOH HOH . C 3 HOH A 34 635 635 HOH HOH . C 3 HOH A 35 636 636 HOH HOH . C 3 HOH A 36 637 637 HOH HOH . C 3 HOH A 37 638 638 HOH HOH . C 3 HOH A 38 639 639 HOH HOH . C 3 HOH A 39 640 640 HOH HOH . C 3 HOH A 40 641 641 HOH HOH . C 3 HOH A 41 642 642 HOH HOH . C 3 HOH A 42 643 643 HOH HOH . C 3 HOH A 43 644 644 HOH HOH . C 3 HOH A 44 645 645 HOH HOH . C 3 HOH A 45 646 646 HOH HOH . C 3 HOH A 46 647 647 HOH HOH . C 3 HOH A 47 648 648 HOH HOH . C 3 HOH A 48 649 649 HOH HOH . C 3 HOH A 49 650 650 HOH HOH . C 3 HOH A 50 651 651 HOH HOH . C 3 HOH A 51 652 652 HOH HOH . C 3 HOH A 52 653 653 HOH HOH . C 3 HOH A 53 654 654 HOH HOH . C 3 HOH A 54 655 655 HOH HOH . C 3 HOH A 55 656 656 HOH HOH . C 3 HOH A 56 657 657 HOH HOH . C 3 HOH A 57 658 658 HOH HOH . C 3 HOH A 58 659 659 HOH HOH . C 3 HOH A 59 660 660 HOH HOH . C 3 HOH A 60 661 661 HOH HOH . C 3 HOH A 61 662 662 HOH HOH . C 3 HOH A 62 663 663 HOH HOH . C 3 HOH A 63 665 665 HOH HOH . C 3 HOH A 64 667 667 HOH HOH . C 3 HOH A 65 668 668 HOH HOH . C 3 HOH A 66 669 669 HOH HOH . C 3 HOH A 67 671 671 HOH HOH . C 3 HOH A 68 672 672 HOH HOH . C 3 HOH A 69 673 673 HOH HOH . C 3 HOH A 70 674 674 HOH HOH . C 3 HOH A 71 675 675 HOH HOH . C 3 HOH A 72 676 676 HOH HOH . C 3 HOH A 73 677 677 HOH HOH . C 3 HOH A 74 679 679 HOH HOH . C 3 HOH A 75 680 680 HOH HOH . C 3 HOH A 76 681 681 HOH HOH . C 3 HOH A 77 682 682 HOH HOH . C 3 HOH A 78 683 683 HOH HOH . C 3 HOH A 79 684 684 HOH HOH . C 3 HOH A 80 685 685 HOH HOH . C 3 HOH A 81 686 686 HOH HOH . C 3 HOH A 82 687 687 HOH HOH . C 3 HOH A 83 688 688 HOH HOH . C 3 HOH A 84 689 689 HOH HOH . C 3 HOH A 85 690 690 HOH HOH . C 3 HOH A 86 691 691 HOH HOH . C 3 HOH A 87 692 692 HOH HOH . C 3 HOH A 88 693 693 HOH HOH . C 3 HOH A 89 694 694 HOH HOH . C 3 HOH A 90 695 695 HOH HOH . C 3 HOH A 91 697 697 HOH HOH . C 3 HOH A 92 698 698 HOH HOH . C 3 HOH A 93 699 699 HOH HOH . C 3 HOH A 94 700 700 HOH HOH . C 3 HOH A 95 701 701 HOH HOH . C 3 HOH A 96 702 702 HOH HOH . C 3 HOH A 97 703 703 HOH HOH . C 3 HOH A 98 704 704 HOH HOH . C 3 HOH A 99 705 705 HOH HOH . C 3 HOH A 100 706 706 HOH HOH . C 3 HOH A 101 707 707 HOH HOH . C 3 HOH A 102 708 708 HOH HOH . C 3 HOH A 103 709 709 HOH HOH . C 3 HOH A 104 710 710 HOH HOH . C 3 HOH A 105 712 712 HOH HOH . C 3 HOH A 106 713 713 HOH HOH . C 3 HOH A 107 714 714 HOH HOH . C 3 HOH A 108 715 715 HOH HOH . C 3 HOH A 109 717 717 HOH HOH . C 3 HOH A 110 718 718 HOH HOH . C 3 HOH A 111 719 719 HOH HOH . C 3 HOH A 112 720 720 HOH HOH . C 3 HOH A 113 721 721 HOH HOH . C 3 HOH A 114 722 722 HOH HOH . C 3 HOH A 115 723 723 HOH HOH . C 3 HOH A 116 724 724 HOH HOH . C 3 HOH A 117 725 725 HOH HOH . C 3 HOH A 118 726 726 HOH HOH . C 3 HOH A 119 727 727 HOH HOH . C 3 HOH A 120 728 728 HOH HOH . C 3 HOH A 121 729 729 HOH HOH . C 3 HOH A 122 730 730 HOH HOH . C 3 HOH A 123 731 731 HOH HOH . C 3 HOH A 124 732 732 HOH HOH . C 3 HOH A 125 733 733 HOH HOH . C 3 HOH A 126 734 734 HOH HOH . C 3 HOH A 127 736 736 HOH HOH . C 3 HOH A 128 738 738 HOH HOH . C 3 HOH A 129 739 739 HOH HOH . C 3 HOH A 130 740 740 HOH HOH . C 3 HOH A 131 741 741 HOH HOH . C 3 HOH A 132 742 742 HOH HOH . C 3 HOH A 133 743 743 HOH HOH . C 3 HOH A 134 745 745 HOH HOH . C 3 HOH A 135 746 746 HOH HOH . C 3 HOH A 136 747 747 HOH HOH . C 3 HOH A 137 748 748 HOH HOH . C 3 HOH A 138 749 749 HOH HOH . C 3 HOH A 139 750 750 HOH HOH . C 3 HOH A 140 751 751 HOH HOH . C 3 HOH A 141 752 752 HOH HOH . C 3 HOH A 142 753 753 HOH HOH . C 3 HOH A 143 754 754 HOH HOH . C 3 HOH A 144 755 755 HOH HOH . C 3 HOH A 145 756 756 HOH HOH . C 3 HOH A 146 757 757 HOH HOH . C 3 HOH A 147 758 758 HOH HOH . C 3 HOH A 148 759 759 HOH HOH . C 3 HOH A 149 760 760 HOH HOH . C 3 HOH A 150 761 761 HOH HOH . C 3 HOH A 151 762 762 HOH HOH . C 3 HOH A 152 763 763 HOH HOH . C 3 HOH A 153 764 764 HOH HOH . C 3 HOH A 154 765 765 HOH HOH . C 3 HOH A 155 766 766 HOH HOH . C 3 HOH A 156 767 767 HOH HOH . C 3 HOH A 157 768 768 HOH HOH . C 3 HOH A 158 770 770 HOH HOH . C 3 HOH A 159 771 771 HOH HOH . C 3 HOH A 160 772 772 HOH HOH . C 3 HOH A 161 773 773 HOH HOH . C 3 HOH A 162 774 774 HOH HOH . C 3 HOH A 163 776 776 HOH HOH . C 3 HOH A 164 777 777 HOH HOH . C 3 HOH A 165 778 778 HOH HOH . C 3 HOH A 166 779 779 HOH HOH . C 3 HOH A 167 780 780 HOH HOH . C 3 HOH A 168 781 781 HOH HOH . C 3 HOH A 169 782 782 HOH HOH . C 3 HOH A 170 783 783 HOH HOH . C 3 HOH A 171 784 784 HOH HOH . C 3 HOH A 172 785 785 HOH HOH . C 3 HOH A 173 786 786 HOH HOH . C 3 HOH A 174 787 787 HOH HOH . C 3 HOH A 175 788 788 HOH HOH . C 3 HOH A 176 789 789 HOH HOH . C 3 HOH A 177 791 791 HOH HOH . C 3 HOH A 178 797 797 HOH HOH . C 3 HOH A 179 798 798 HOH HOH . C 3 HOH A 180 799 799 HOH HOH . C 3 HOH A 181 800 800 HOH HOH . C 3 HOH A 182 801 801 HOH HOH . C 3 HOH A 183 802 802 HOH HOH . C 3 HOH A 184 803 803 HOH HOH . C 3 HOH A 185 804 804 HOH HOH . C 3 HOH A 186 805 805 HOH HOH . C 3 HOH A 187 806 806 HOH HOH . C 3 HOH A 188 807 807 HOH HOH . C 3 HOH A 189 808 808 HOH HOH . C 3 HOH A 190 811 811 HOH HOH . C 3 HOH A 191 812 812 HOH HOH . C 3 HOH A 192 813 813 HOH HOH . C 3 HOH A 193 814 814 HOH HOH . C 3 HOH A 194 815 815 HOH HOH . C 3 HOH A 195 816 816 HOH HOH . C 3 HOH A 196 817 817 HOH HOH . C 3 HOH A 197 819 819 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 984 . . . B 2 22.929 10.681 31.054 1 20.38 ? N1 984 501 A 1 HETATM 2 C C2 984 . . . B 2 23.012 12.032 30.959 1 21.19 ? C2 984 501 A 1 HETATM 3 N N3 984 . . . B 2 22.099 12.689 31.761 1 20.39 ? N3 984 501 A 1 HETATM 4 C C4 984 . . . B 2 21.286 11.715 32.506 1 18.32 ? C4 984 501 A 1 HETATM 5 C C5 984 . . . B 2 21.818 10.391 32.07 1 18.75 ? C5 984 501 A 1 HETATM 6 C C6 984 . . . B 2 23.81 9.773 30.284 1 16.92 ? C6 984 501 A 1 HETATM 7 C C7 984 . . . B 2 25.052 9.346 31.058 1 22.2 ? C7 984 501 A 1 HETATM 8 C C10 984 . . . B 2 26.273 9.103 30.175 1 21.68 ? C10 984 501 A 1 HETATM 9 C C16 984 . . . B 2 23.755 12.832 30.259 1 23.06 ? C16 984 501 A 1 HETATM 10 C C17 984 . . . B 2 22.993 13.755 29.246 1 24.67 ? C17 984 501 A 1 HETATM 11 C C18 984 . . . B 2 23.949 14.69 28.421 1 25.86 ? C18 984 501 A 1 HETATM 12 N N19 984 . . . B 2 24.867 15.478 29.304 1 27.09 ? N19 984 501 A 1 HETATM 13 C C20 984 . . . B 2 25.646 14.618 30.217 1 26.19 ? C20 984 501 A 1 HETATM 14 C C21 984 . . . B 2 24.742 13.694 31.104 1 23.46 ? C21 984 501 A 1 HETATM 15 C C31 984 . . . B 2 25.771 16.33 28.49 1 26.38 ? C31 984 501 A 1 HETATM 16 C C35 984 . . . B 2 20.233 12.113 33.484 1 15.75 ? C35 984 501 A 1 HETATM 17 C C36 984 . . . B 2 21.478 8.914 32.226 1 18.11 ? C36 984 501 A 1 HETATM 18 C C37 984 . . . B 2 20.149 11.487 34.75 1 14.63 ? C37 984 501 A 1 HETATM 19 C C38 984 . . . B 2 19.164 11.823 35.678 1 13.58 ? C38 984 501 A 1 HETATM 20 C C39 984 . . . B 2 18.187 12.8 35.352 1 13.81 ? C39 984 501 A 1 HETATM 21 C C40 984 . . . B 2 18.251 13.461 34.084 1 15.25 ? C40 984 501 A 1 HETATM 22 C C41 984 . . . B 2 19.283 13.102 33.14 1 17.72 ? C41 984 501 A 1 HETATM 23 CL CL45 984 . . . B 2 19.205 10.973 37.165 1 1 ? CL45 984 501 A 1 HETATM 24 CL CL46 984 . . . B 2 16.917 13.246 36.437 1 4.05 ? CL46 984 501 A 1 HETATM 25 C C47 984 . . . B 2 20.24 8.598 32.848 1 18.2 ? C47 984 501 A 1 HETATM 26 C C48 984 . . . B 2 19.962 7.222 33.017 1 14.4 ? C48 984 501 A 1 HETATM 27 N N49 984 . . . B 2 20.831 6.265 32.634 1 19.07 ? N49 984 501 A 1 HETATM 28 C C50 984 . . . B 2 21.978 6.679 32.078 1 18.17 ? C50 984 501 A 1 HETATM 29 N N51 984 . . . B 2 22.318 7.95 31.867 1 19.33 ? N51 984 501 A 1 HETATM 30 N N54 984 . . . B 2 22.907 5.776 31.683 1 21.3 ? N54 984 501 A 1 HETATM 31 C C55 984 . . . B 2 23.04 5.365 30.301 1 24.56 ? C55 984 501 A 1 HETATM 32 C C56 984 . . . B 2 24.372 4.72 30.671 1 23.09 ? C56 984 501 A 1 HETATM 33 C C57 984 . . . B 2 24.257 5.791 29.633 1 22.39 ? C57 984 501 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #