data_1PMY # _model_server_result.job_id ToIpHUgRsfhWblnxImVeSw _model_server_result.datetime_utc '2025-02-28 03:57:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pmy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":124}' # _entry.id 1PMY # _exptl.entry_id 1PMY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PMY _cell.length_a 52.619 _cell.length_b 63.28 _cell.length_c 35.133 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 40 A HIS 40 1_555 B CU CU . A CU 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc2 A SG CYS 78 A CYS 78 1_555 B CU CU . A CU 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc3 A ND1 HIS 81 A HIS 81 1_555 B CU CU . A CU 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc4 A SD MET 86 A MET 86 1_555 B CU CU . A CU 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1PMY _atom_sites.fract_transf_matrix[1][1] 0.019005 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 124 124 CU CU . C 3 HOH A 1 125 125 HOH HOH . C 3 HOH A 2 126 126 HOH HOH . C 3 HOH A 3 127 127 HOH HOH . C 3 HOH A 4 128 128 HOH HOH . C 3 HOH A 5 129 129 HOH HOH . C 3 HOH A 6 130 130 HOH HOH . C 3 HOH A 7 131 131 HOH HOH . C 3 HOH A 8 132 132 HOH HOH . C 3 HOH A 9 133 133 HOH HOH . C 3 HOH A 10 134 134 HOH HOH . C 3 HOH A 11 135 135 HOH HOH . C 3 HOH A 12 136 136 HOH HOH . C 3 HOH A 13 137 137 HOH HOH . C 3 HOH A 14 138 138 HOH HOH . C 3 HOH A 15 139 139 HOH HOH . C 3 HOH A 16 140 140 HOH HOH . C 3 HOH A 17 141 141 HOH HOH . C 3 HOH A 18 142 142 HOH HOH . C 3 HOH A 19 143 143 HOH HOH . C 3 HOH A 20 144 144 HOH HOH . C 3 HOH A 21 145 145 HOH HOH . C 3 HOH A 22 146 146 HOH HOH . C 3 HOH A 23 147 147 HOH HOH . C 3 HOH A 24 148 148 HOH HOH . C 3 HOH A 25 149 149 HOH HOH . C 3 HOH A 26 150 150 HOH HOH . C 3 HOH A 27 151 151 HOH HOH . C 3 HOH A 28 152 152 HOH HOH . C 3 HOH A 29 153 153 HOH HOH . C 3 HOH A 30 154 154 HOH HOH . C 3 HOH A 31 155 155 HOH HOH . C 3 HOH A 32 156 156 HOH HOH . C 3 HOH A 33 157 157 HOH HOH . C 3 HOH A 34 158 158 HOH HOH . C 3 HOH A 35 159 159 HOH HOH . C 3 HOH A 36 160 160 HOH HOH . C 3 HOH A 37 161 161 HOH HOH . C 3 HOH A 38 162 162 HOH HOH . C 3 HOH A 39 163 163 HOH HOH . C 3 HOH A 40 164 164 HOH HOH . C 3 HOH A 41 165 165 HOH HOH . C 3 HOH A 42 166 166 HOH HOH . C 3 HOH A 43 167 167 HOH HOH . C 3 HOH A 44 168 168 HOH HOH . C 3 HOH A 45 169 169 HOH HOH . C 3 HOH A 46 170 170 HOH HOH . C 3 HOH A 47 171 171 HOH HOH . C 3 HOH A 48 172 172 HOH HOH . C 3 HOH A 49 173 173 HOH HOH . C 3 HOH A 50 174 174 HOH HOH . C 3 HOH A 51 175 175 HOH HOH . C 3 HOH A 52 176 176 HOH HOH . C 3 HOH A 53 177 177 HOH HOH . C 3 HOH A 54 178 178 HOH HOH . C 3 HOH A 55 179 179 HOH HOH . C 3 HOH A 56 180 180 HOH HOH . C 3 HOH A 57 181 181 HOH HOH . C 3 HOH A 58 182 182 HOH HOH . C 3 HOH A 59 183 183 HOH HOH . C 3 HOH A 60 184 184 HOH HOH . C 3 HOH A 61 185 185 HOH HOH . C 3 HOH A 62 186 186 HOH HOH . C 3 HOH A 63 187 187 HOH HOH . C 3 HOH A 64 188 188 HOH HOH . C 3 HOH A 65 189 189 HOH HOH . C 3 HOH A 66 190 190 HOH HOH . C 3 HOH A 67 191 191 HOH HOH . C 3 HOH A 68 192 192 HOH HOH . C 3 HOH A 69 193 193 HOH HOH . C 3 HOH A 70 194 194 HOH HOH . C 3 HOH A 71 195 195 HOH HOH . C 3 HOH A 72 196 196 HOH HOH . C 3 HOH A 73 197 197 HOH HOH . C 3 HOH A 74 198 198 HOH HOH . C 3 HOH A 75 199 199 HOH HOH . C 3 HOH A 76 200 200 HOH HOH . C 3 HOH A 77 201 201 HOH HOH . C 3 HOH A 78 202 202 HOH HOH . C 3 HOH A 79 203 203 HOH HOH . C 3 HOH A 80 204 204 HOH HOH . C 3 HOH A 81 205 205 HOH HOH . C 3 HOH A 82 206 206 HOH HOH . C 3 HOH A 83 207 207 HOH HOH . C 3 HOH A 84 208 208 HOH HOH . C 3 HOH A 85 209 209 HOH HOH . C 3 HOH A 86 210 210 HOH HOH . C 3 HOH A 87 211 211 HOH HOH . C 3 HOH A 88 212 212 HOH HOH . C 3 HOH A 89 213 213 HOH HOH . C 3 HOH A 90 214 214 HOH HOH . C 3 HOH A 91 215 215 HOH HOH . C 3 HOH A 92 216 216 HOH HOH . C 3 HOH A 93 217 217 HOH HOH . C 3 HOH A 94 218 218 HOH HOH . C 3 HOH A 95 219 219 HOH HOH . C 3 HOH A 96 220 220 HOH HOH . C 3 HOH A 97 221 221 HOH HOH . C 3 HOH A 98 222 222 HOH HOH . C 3 HOH A 99 223 223 HOH HOH . C 3 HOH A 100 224 224 HOH HOH . C 3 HOH A 101 225 225 HOH HOH . C 3 HOH A 102 226 226 HOH HOH . C 3 HOH A 103 227 227 HOH HOH . C 3 HOH A 104 228 228 HOH HOH . C 3 HOH A 105 229 229 HOH HOH . C 3 HOH A 106 230 230 HOH HOH . C 3 HOH A 107 231 231 HOH HOH . C 3 HOH A 108 232 232 HOH HOH . C 3 HOH A 109 233 233 HOH HOH . C 3 HOH A 110 234 234 HOH HOH . C 3 HOH A 111 235 235 HOH HOH . C 3 HOH A 112 236 236 HOH HOH . C 3 HOH A 113 237 237 HOH HOH . C 3 HOH A 114 238 238 HOH HOH . C 3 HOH A 115 239 239 HOH HOH . C 3 HOH A 116 240 240 HOH HOH . C 3 HOH A 117 241 241 HOH HOH . C 3 HOH A 118 242 242 HOH HOH . C 3 HOH A 119 243 243 HOH HOH . C 3 HOH A 120 244 244 HOH HOH . C 3 HOH A 121 245 245 HOH HOH . C 3 HOH A 122 246 246 HOH HOH . C 3 HOH A 123 247 247 HOH HOH . C 3 HOH A 124 248 248 HOH HOH . C 3 HOH A 125 249 249 HOH HOH . C 3 HOH A 126 250 250 HOH HOH . C 3 HOH A 127 251 251 HOH HOH . C 3 HOH A 128 252 252 HOH HOH . C 3 HOH A 129 253 253 HOH HOH . C 3 HOH A 130 254 254 HOH HOH . C 3 HOH A 131 255 255 HOH HOH . C 3 HOH A 132 256 256 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.715 _atom_site.Cartn_y 16.41 _atom_site.Cartn_z 20.977 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 124 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 1293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #