data_1PN9 # _model_server_result.job_id 1bLhMe0lZOh_hfhXn7uIHw _model_server_result.datetime_utc '2024-12-04 23:42:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pn9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1PN9 # _exptl.entry_id 1PN9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.491 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-HEXYLGLUTATHIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PN9 _cell.length_a 50.2 _cell.length_b 89.4 _cell.length_c 100 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C16 H30 N3 O6 S 1' _chem_comp.formula_weight 392.491 _chem_comp.id GTX _chem_comp.mon_nstd_flag . _chem_comp.name S-HEXYLGLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GTX sing 129 n n N1 HN11 GTX sing 130 n n N1 HN12 GTX sing 131 n n N1 HN13 GTX sing 132 n n CA1 C1 GTX sing 133 n n CA1 CB1 GTX sing 134 n n CA1 HA1 GTX sing 135 n n C1 O11 GTX doub 136 n n C1 O12 GTX sing 137 n n O12 HO2 GTX sing 138 n n CB1 CG1 GTX sing 139 n n CB1 HB11 GTX sing 140 n n CB1 HB12 GTX sing 141 n n CG1 CD1 GTX sing 142 n n CG1 HG11 GTX sing 143 n n CG1 HG12 GTX sing 144 n n CD1 OE1 GTX doub 145 n n CD1 N2 GTX sing 146 n n N2 CA2 GTX sing 147 n n N2 HN2 GTX sing 148 n n CA2 C2 GTX sing 149 n n CA2 CB2 GTX sing 150 n n CA2 HA2 GTX sing 151 n n C2 O2 GTX doub 152 n n C2 N3 GTX sing 153 n n CB2 SG2 GTX sing 154 n n CB2 HB21 GTX sing 155 n n CB2 HB22 GTX sing 156 n n SG2 C1S GTX sing 157 n n C1S C2S GTX sing 158 n n C1S HS11 GTX sing 159 n n C1S HS12 GTX sing 160 n n C2S C3S GTX sing 161 n n C2S HS21 GTX sing 162 n n C2S HS22 GTX sing 163 n n C3S C4S GTX sing 164 n n C3S HS31 GTX sing 165 n n C3S HS32 GTX sing 166 n n C4S C5S GTX sing 167 n n C4S HS41 GTX sing 168 n n C4S HS42 GTX sing 169 n n C5S C6S GTX sing 170 n n C5S HS51 GTX sing 171 n n C5S HS52 GTX sing 172 n n C6S HS61 GTX sing 173 n n C6S HS62 GTX sing 174 n n C6S HS63 GTX sing 175 n n N3 CA3 GTX sing 176 n n N3 HN3 GTX sing 177 n n CA3 C3 GTX sing 178 n n CA3 HA31 GTX sing 179 n n CA3 HA32 GTX sing 180 n n C3 O31 GTX doub 181 n n C3 O32 GTX sing 182 n n O32 HO3 GTX sing 183 n n # _atom_sites.entry_id 1PN9 _atom_sites.fract_transf_matrix[1][1] 0.01992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTX A 1 301 1 GTX GTX . D 2 GTX B 1 302 2 GTX GTX . E 3 HOH A 1 302 1 HOH HOH . E 3 HOH A 2 303 2 HOH HOH . E 3 HOH A 3 304 4 HOH HOH . E 3 HOH A 4 305 6 HOH HOH . E 3 HOH A 5 306 7 HOH HOH . E 3 HOH A 6 307 10 HOH HOH . E 3 HOH A 7 308 12 HOH HOH . E 3 HOH A 8 309 15 HOH HOH . E 3 HOH A 9 310 16 HOH HOH . E 3 HOH A 10 311 17 HOH HOH . E 3 HOH A 11 312 19 HOH HOH . E 3 HOH A 12 313 21 HOH HOH . E 3 HOH A 13 314 24 HOH HOH . E 3 HOH A 14 315 25 HOH HOH . E 3 HOH A 15 316 30 HOH HOH . E 3 HOH A 16 317 31 HOH HOH . E 3 HOH A 17 318 33 HOH HOH . E 3 HOH A 18 319 34 HOH HOH . E 3 HOH A 19 320 38 HOH HOH . E 3 HOH A 20 321 41 HOH HOH . E 3 HOH A 21 322 42 HOH HOH . E 3 HOH A 22 323 46 HOH HOH . E 3 HOH A 23 324 50 HOH HOH . E 3 HOH A 24 325 53 HOH HOH . E 3 HOH A 25 326 54 HOH HOH . E 3 HOH A 26 327 58 HOH HOH . E 3 HOH A 27 328 61 HOH HOH . E 3 HOH A 28 329 62 HOH HOH . E 3 HOH A 29 330 66 HOH HOH . E 3 HOH A 30 331 67 HOH HOH . E 3 HOH A 31 332 71 HOH HOH . E 3 HOH A 32 333 75 HOH HOH . E 3 HOH A 33 334 79 HOH HOH . E 3 HOH A 34 335 82 HOH HOH . E 3 HOH A 35 336 83 HOH HOH . E 3 HOH A 36 337 84 HOH HOH . E 3 HOH A 37 338 86 HOH HOH . E 3 HOH A 38 339 87 HOH HOH . E 3 HOH A 39 340 90 HOH HOH . E 3 HOH A 40 341 91 HOH HOH . E 3 HOH A 41 342 93 HOH HOH . E 3 HOH A 42 343 95 HOH HOH . E 3 HOH A 43 344 96 HOH HOH . E 3 HOH A 44 345 97 HOH HOH . E 3 HOH A 45 346 98 HOH HOH . E 3 HOH A 46 347 101 HOH HOH . E 3 HOH A 47 348 105 HOH HOH . E 3 HOH A 48 349 107 HOH HOH . E 3 HOH A 49 350 108 HOH HOH . E 3 HOH A 50 351 111 HOH HOH . E 3 HOH A 51 352 115 HOH HOH . E 3 HOH A 52 353 116 HOH HOH . E 3 HOH A 53 354 118 HOH HOH . E 3 HOH A 54 355 119 HOH HOH . E 3 HOH A 55 356 122 HOH HOH . E 3 HOH A 56 357 124 HOH HOH . E 3 HOH A 57 358 128 HOH HOH . E 3 HOH A 58 359 129 HOH HOH . E 3 HOH A 59 360 131 HOH HOH . E 3 HOH A 60 361 134 HOH HOH . E 3 HOH A 61 362 139 HOH HOH . E 3 HOH A 62 363 141 HOH HOH . E 3 HOH A 63 364 143 HOH HOH . E 3 HOH A 64 365 144 HOH HOH . E 3 HOH A 65 366 148 HOH HOH . E 3 HOH A 66 367 150 HOH HOH . E 3 HOH A 67 368 151 HOH HOH . E 3 HOH A 68 369 152 HOH HOH . E 3 HOH A 69 370 155 HOH HOH . E 3 HOH A 70 371 156 HOH HOH . E 3 HOH A 71 372 160 HOH HOH . E 3 HOH A 72 373 161 HOH HOH . E 3 HOH A 73 374 162 HOH HOH . E 3 HOH A 74 375 164 HOH HOH . E 3 HOH A 75 376 165 HOH HOH . E 3 HOH A 76 377 166 HOH HOH . E 3 HOH A 77 378 167 HOH HOH . E 3 HOH A 78 379 168 HOH HOH . E 3 HOH A 79 380 171 HOH HOH . E 3 HOH A 80 381 174 HOH HOH . E 3 HOH A 81 382 176 HOH HOH . E 3 HOH A 82 383 177 HOH HOH . E 3 HOH A 83 384 178 HOH HOH . E 3 HOH A 84 385 181 HOH HOH . E 3 HOH A 85 386 182 HOH HOH . E 3 HOH A 86 387 183 HOH HOH . E 3 HOH A 87 388 187 HOH HOH . E 3 HOH A 88 389 188 HOH HOH . E 3 HOH A 89 390 190 HOH HOH . E 3 HOH A 90 391 191 HOH HOH . E 3 HOH A 91 392 193 HOH HOH . E 3 HOH A 92 393 194 HOH HOH . E 3 HOH A 93 394 199 HOH HOH . E 3 HOH A 94 395 200 HOH HOH . E 3 HOH A 95 396 202 HOH HOH . E 3 HOH A 96 397 204 HOH HOH . E 3 HOH A 97 398 209 HOH HOH . E 3 HOH A 98 399 210 HOH HOH . E 3 HOH A 99 400 212 HOH HOH . E 3 HOH A 100 401 213 HOH HOH . E 3 HOH A 101 402 214 HOH HOH . E 3 HOH A 102 403 215 HOH HOH . E 3 HOH A 103 404 216 HOH HOH . E 3 HOH A 104 405 217 HOH HOH . E 3 HOH A 105 406 219 HOH HOH . E 3 HOH A 106 407 220 HOH HOH . E 3 HOH A 107 408 221 HOH HOH . E 3 HOH A 108 409 224 HOH HOH . E 3 HOH A 109 410 226 HOH HOH . E 3 HOH A 110 411 228 HOH HOH . E 3 HOH A 111 412 230 HOH HOH . E 3 HOH A 112 413 232 HOH HOH . F 3 HOH B 1 303 3 HOH HOH . F 3 HOH B 2 304 5 HOH HOH . F 3 HOH B 3 305 8 HOH HOH . F 3 HOH B 4 306 9 HOH HOH . F 3 HOH B 5 307 11 HOH HOH . F 3 HOH B 6 308 13 HOH HOH . F 3 HOH B 7 309 14 HOH HOH . F 3 HOH B 8 310 18 HOH HOH . F 3 HOH B 9 311 20 HOH HOH . F 3 HOH B 10 312 22 HOH HOH . F 3 HOH B 11 313 23 HOH HOH . F 3 HOH B 12 314 26 HOH HOH . F 3 HOH B 13 315 27 HOH HOH . F 3 HOH B 14 316 28 HOH HOH . F 3 HOH B 15 317 29 HOH HOH . F 3 HOH B 16 318 32 HOH HOH . F 3 HOH B 17 319 35 HOH HOH . F 3 HOH B 18 320 36 HOH HOH . F 3 HOH B 19 321 37 HOH HOH . F 3 HOH B 20 322 39 HOH HOH . F 3 HOH B 21 323 40 HOH HOH . F 3 HOH B 22 324 43 HOH HOH . F 3 HOH B 23 325 44 HOH HOH . F 3 HOH B 24 326 45 HOH HOH . F 3 HOH B 25 327 47 HOH HOH . F 3 HOH B 26 328 48 HOH HOH . F 3 HOH B 27 329 49 HOH HOH . F 3 HOH B 28 330 51 HOH HOH . F 3 HOH B 29 331 52 HOH HOH . F 3 HOH B 30 332 55 HOH HOH . F 3 HOH B 31 333 56 HOH HOH . F 3 HOH B 32 334 57 HOH HOH . F 3 HOH B 33 335 59 HOH HOH . F 3 HOH B 34 336 60 HOH HOH . F 3 HOH B 35 337 63 HOH HOH . F 3 HOH B 36 338 64 HOH HOH . F 3 HOH B 37 339 65 HOH HOH . F 3 HOH B 38 340 68 HOH HOH . F 3 HOH B 39 341 69 HOH HOH . F 3 HOH B 40 342 70 HOH HOH . F 3 HOH B 41 343 72 HOH HOH . F 3 HOH B 42 344 73 HOH HOH . F 3 HOH B 43 345 74 HOH HOH . F 3 HOH B 44 346 76 HOH HOH . F 3 HOH B 45 347 77 HOH HOH . F 3 HOH B 46 348 78 HOH HOH . F 3 HOH B 47 349 80 HOH HOH . F 3 HOH B 48 350 81 HOH HOH . F 3 HOH B 49 351 85 HOH HOH . F 3 HOH B 50 352 88 HOH HOH . F 3 HOH B 51 353 89 HOH HOH . F 3 HOH B 52 354 92 HOH HOH . F 3 HOH B 53 355 94 HOH HOH . F 3 HOH B 54 356 99 HOH HOH . F 3 HOH B 55 357 100 HOH HOH . F 3 HOH B 56 358 102 HOH HOH . F 3 HOH B 57 359 103 HOH HOH . F 3 HOH B 58 360 104 HOH HOH . F 3 HOH B 59 361 106 HOH HOH . F 3 HOH B 60 362 109 HOH HOH . F 3 HOH B 61 363 110 HOH HOH . F 3 HOH B 62 364 112 HOH HOH . F 3 HOH B 63 365 113 HOH HOH . F 3 HOH B 64 366 114 HOH HOH . F 3 HOH B 65 367 117 HOH HOH . F 3 HOH B 66 368 120 HOH HOH . F 3 HOH B 67 369 121 HOH HOH . F 3 HOH B 68 370 123 HOH HOH . F 3 HOH B 69 371 125 HOH HOH . F 3 HOH B 70 372 126 HOH HOH . F 3 HOH B 71 373 127 HOH HOH . F 3 HOH B 72 374 130 HOH HOH . F 3 HOH B 73 375 132 HOH HOH . F 3 HOH B 74 376 133 HOH HOH . F 3 HOH B 75 377 135 HOH HOH . F 3 HOH B 76 378 136 HOH HOH . F 3 HOH B 77 379 137 HOH HOH . F 3 HOH B 78 380 138 HOH HOH . F 3 HOH B 79 381 140 HOH HOH . F 3 HOH B 80 382 142 HOH HOH . F 3 HOH B 81 383 145 HOH HOH . F 3 HOH B 82 384 146 HOH HOH . F 3 HOH B 83 385 147 HOH HOH . F 3 HOH B 84 386 149 HOH HOH . F 3 HOH B 85 387 153 HOH HOH . F 3 HOH B 86 388 154 HOH HOH . F 3 HOH B 87 389 157 HOH HOH . F 3 HOH B 88 390 158 HOH HOH . F 3 HOH B 89 391 159 HOH HOH . F 3 HOH B 90 392 163 HOH HOH . F 3 HOH B 91 393 169 HOH HOH . F 3 HOH B 92 394 170 HOH HOH . F 3 HOH B 93 395 172 HOH HOH . F 3 HOH B 94 396 173 HOH HOH . F 3 HOH B 95 397 175 HOH HOH . F 3 HOH B 96 398 179 HOH HOH . F 3 HOH B 97 399 180 HOH HOH . F 3 HOH B 98 400 184 HOH HOH . F 3 HOH B 99 401 185 HOH HOH . F 3 HOH B 100 402 186 HOH HOH . F 3 HOH B 101 403 189 HOH HOH . F 3 HOH B 102 404 192 HOH HOH . F 3 HOH B 103 405 195 HOH HOH . F 3 HOH B 104 406 196 HOH HOH . F 3 HOH B 105 407 197 HOH HOH . F 3 HOH B 106 408 198 HOH HOH . F 3 HOH B 107 409 201 HOH HOH . F 3 HOH B 108 410 203 HOH HOH . F 3 HOH B 109 411 205 HOH HOH . F 3 HOH B 110 412 206 HOH HOH . F 3 HOH B 111 413 207 HOH HOH . F 3 HOH B 112 414 208 HOH HOH . F 3 HOH B 113 415 211 HOH HOH . F 3 HOH B 114 416 218 HOH HOH . F 3 HOH B 115 417 222 HOH HOH . F 3 HOH B 116 418 223 HOH HOH . F 3 HOH B 117 419 225 HOH HOH . F 3 HOH B 118 420 227 HOH HOH . F 3 HOH B 119 421 229 HOH HOH . F 3 HOH B 120 422 231 HOH HOH . F 3 HOH B 121 423 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GTX . . . C 2 47.914 48.846 15.813 1 20.55 ? N1 GTX 301 A 1 HETATM 2 C CA1 GTX . . . C 2 48.451 47.743 14.976 1 20.6 ? CA1 GTX 301 A 1 HETATM 3 C C1 GTX . . . C 2 48.191 48.001 13.492 1 22.7 ? C1 GTX 301 A 1 HETATM 4 O O11 GTX . . . C 2 48.894 47.387 12.656 1 22.19 ? O11 GTX 301 A 1 HETATM 5 O O12 GTX . . . C 2 47.297 48.817 13.185 1 22.25 ? O12 GTX 301 A 1 HETATM 6 C CB1 GTX . . . C 2 47.817 46.413 15.396 1 20.96 ? CB1 GTX 301 A 1 HETATM 7 C CG1 GTX . . . C 2 48.328 45.216 14.618 1 23.16 ? CG1 GTX 301 A 1 HETATM 8 C CD1 GTX . . . C 2 47.929 43.898 15.247 1 23.31 ? CD1 GTX 301 A 1 HETATM 9 O OE1 GTX . . . C 2 47.112 43.856 16.165 1 24.35 ? OE1 GTX 301 A 1 HETATM 10 N N2 GTX . . . C 2 48.506 42.813 14.745 1 21.78 ? N2 GTX 301 A 1 HETATM 11 C CA2 GTX . . . C 2 48.223 41.492 15.268 1 23.15 ? CA2 GTX 301 A 1 HETATM 12 C C2 GTX . . . C 2 49.523 40.766 15.58 1 23.85 ? C2 GTX 301 A 1 HETATM 13 O O2 GTX . . . C 2 50.457 40.759 14.765 1 24.25 ? O2 GTX 301 A 1 HETATM 14 C CB2 GTX . . . C 2 47.406 40.692 14.255 1 25.8 ? CB2 GTX 301 A 1 HETATM 15 S SG2 GTX . . . C 2 45.844 41.476 13.84 1 27.5 ? SG2 GTX 301 A 1 HETATM 16 C C1S GTX . . . C 2 44.733 40.615 14.956 1 31.37 ? C1S GTX 301 A 1 HETATM 17 C C2S GTX . . . C 2 43.841 39.599 14.266 1 34.55 ? C2S GTX 301 A 1 HETATM 18 C C3S GTX . . . C 2 44.612 38.401 13.745 1 34.39 ? C3S GTX 301 A 1 HETATM 19 C C4S GTX . . . C 2 43.644 37.353 13.211 1 35.63 ? C4S GTX 301 A 1 HETATM 20 C C5S GTX . . . C 2 44.362 36.114 12.695 1 33.24 ? C5S GTX 301 A 1 HETATM 21 C C6S GTX . . . C 2 44.986 35.329 13.827 1 34.25 ? C6S GTX 301 A 1 HETATM 22 N N3 GTX . . . C 2 49.561 40.145 16.755 1 23.38 ? N3 GTX 301 A 1 HETATM 23 C CA3 GTX . . . C 2 50.7 39.388 17.272 1 23.47 ? CA3 GTX 301 A 1 HETATM 24 C C3 GTX . . . C 2 51.671 40.231 18.091 1 24.91 ? C3 GTX 301 A 1 HETATM 25 O O31 GTX . . . C 2 52.58 39.644 18.724 1 24.15 ? O31 GTX 301 A 1 HETATM 26 O O32 GTX . . . C 2 51.536 41.47 18.105 1 21.52 ? O32 GTX 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #