data_1PNF # _model_server_result.job_id bzLdkKnlVJJMqaQ42a2iXg _model_server_result.datetime_utc '2025-02-22 11:30:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pnf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 1PNF # _exptl.entry_id 1PNF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PNF _cell.length_a 87.11 _cell.length_b 123.08 _cell.length_c 77.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PNF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NDG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NDG 1 B 1 NDG ? 431 NAG 2 n B NAG 2 B 2 NAG ? 432 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 51 1_555 A SG CYS 56 A CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf2 A SG CYS 204 A CYS 204 1_555 A SG CYS 208 A CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 231 A CYS 231 1_555 A SG CYS 252 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 B O4 NDG . B NDG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 350 n n S O2 SO4 doub 351 n n S O3 SO4 sing 352 n n S O4 SO4 sing 353 n n # _atom_sites.entry_id 1PNF _atom_sites.fract_transf_matrix[1][1] 0.01148 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 500 500 SO4 SO4 . D 4 HOH A 1 501 3 HOH HOH . D 4 HOH A 2 502 11 HOH HOH . D 4 HOH A 3 503 12 HOH HOH . D 4 HOH A 4 504 14 HOH HOH . D 4 HOH A 5 505 15 HOH HOH . D 4 HOH A 6 506 17 HOH HOH . D 4 HOH A 7 507 18 HOH HOH . D 4 HOH A 8 508 19 HOH HOH . D 4 HOH A 9 509 22 HOH HOH . D 4 HOH A 10 510 23 HOH HOH . D 4 HOH A 11 511 24 HOH HOH . D 4 HOH A 12 512 25 HOH HOH . D 4 HOH A 13 513 27 HOH HOH . D 4 HOH A 14 514 32 HOH HOH . D 4 HOH A 15 515 35 HOH HOH . D 4 HOH A 16 516 36 HOH HOH . D 4 HOH A 17 517 41 HOH HOH . D 4 HOH A 18 518 42 HOH HOH . D 4 HOH A 19 519 43 HOH HOH . D 4 HOH A 20 520 44 HOH HOH . D 4 HOH A 21 521 45 HOH HOH . D 4 HOH A 22 522 46 HOH HOH . D 4 HOH A 23 523 48 HOH HOH . D 4 HOH A 24 524 49 HOH HOH . D 4 HOH A 25 525 50 HOH HOH . D 4 HOH A 26 526 551 HOH HOH . D 4 HOH A 27 527 52 HOH HOH . D 4 HOH A 28 528 53 HOH HOH . D 4 HOH A 29 529 54 HOH HOH . D 4 HOH A 30 530 55 HOH HOH . D 4 HOH A 31 531 58 HOH HOH . D 4 HOH A 32 532 59 HOH HOH . D 4 HOH A 33 533 60 HOH HOH . D 4 HOH A 34 534 61 HOH HOH . D 4 HOH A 35 535 62 HOH HOH . D 4 HOH A 36 536 64 HOH HOH . D 4 HOH A 37 537 66 HOH HOH . D 4 HOH A 38 538 67 HOH HOH . D 4 HOH A 39 539 68 HOH HOH . D 4 HOH A 40 540 69 HOH HOH . D 4 HOH A 41 541 70 HOH HOH . D 4 HOH A 42 542 73 HOH HOH . D 4 HOH A 43 543 74 HOH HOH . D 4 HOH A 44 544 75 HOH HOH . D 4 HOH A 45 545 77 HOH HOH . D 4 HOH A 46 546 78 HOH HOH . D 4 HOH A 47 547 80 HOH HOH . D 4 HOH A 48 548 82 HOH HOH . D 4 HOH A 49 549 84 HOH HOH . D 4 HOH A 50 550 85 HOH HOH . D 4 HOH A 51 551 86 HOH HOH . D 4 HOH A 52 552 87 HOH HOH . D 4 HOH A 53 553 88 HOH HOH . D 4 HOH A 54 554 89 HOH HOH . D 4 HOH A 55 555 90 HOH HOH . D 4 HOH A 56 556 91 HOH HOH . D 4 HOH A 57 557 92 HOH HOH . D 4 HOH A 58 558 93 HOH HOH . D 4 HOH A 59 559 94 HOH HOH . D 4 HOH A 60 560 95 HOH HOH . D 4 HOH A 61 561 97 HOH HOH . D 4 HOH A 62 562 98 HOH HOH . D 4 HOH A 63 563 99 HOH HOH . D 4 HOH A 64 564 100 HOH HOH . D 4 HOH A 65 565 101 HOH HOH . D 4 HOH A 66 566 103 HOH HOH . D 4 HOH A 67 567 105 HOH HOH . D 4 HOH A 68 568 106 HOH HOH . D 4 HOH A 69 569 108 HOH HOH . D 4 HOH A 70 570 126 HOH HOH . D 4 HOH A 71 571 138 HOH HOH . D 4 HOH A 72 572 141 HOH HOH . D 4 HOH A 73 573 146 HOH HOH . D 4 HOH A 74 574 149 HOH HOH . D 4 HOH A 75 575 154 HOH HOH . D 4 HOH A 76 576 155 HOH HOH . D 4 HOH A 77 577 157 HOH HOH . D 4 HOH A 78 578 158 HOH HOH . D 4 HOH A 79 579 177 HOH HOH . D 4 HOH A 80 580 182 HOH HOH . D 4 HOH A 81 581 183 HOH HOH . D 4 HOH A 82 582 196 HOH HOH . D 4 HOH A 83 583 226 HOH HOH . D 4 HOH A 84 584 261 HOH HOH . D 4 HOH A 85 585 263 HOH HOH . D 4 HOH A 86 586 268 HOH HOH . D 4 HOH A 87 587 269 HOH HOH . D 4 HOH A 88 588 270 HOH HOH . D 4 HOH A 89 589 271 HOH HOH . D 4 HOH A 90 590 272 HOH HOH . D 4 HOH A 91 591 273 HOH HOH . D 4 HOH A 92 592 274 HOH HOH . D 4 HOH A 93 593 275 HOH HOH . D 4 HOH A 94 594 276 HOH HOH . D 4 HOH A 95 595 277 HOH HOH . D 4 HOH A 96 596 278 HOH HOH . D 4 HOH A 97 597 279 HOH HOH . D 4 HOH A 98 598 280 HOH HOH . D 4 HOH A 99 599 281 HOH HOH . D 4 HOH A 100 600 282 HOH HOH . D 4 HOH A 101 601 283 HOH HOH . D 4 HOH A 102 602 284 HOH HOH . D 4 HOH A 103 603 285 HOH HOH . D 4 HOH A 104 604 286 HOH HOH . D 4 HOH A 105 605 287 HOH HOH . D 4 HOH A 106 606 289 HOH HOH . D 4 HOH A 107 607 290 HOH HOH . D 4 HOH A 108 608 291 HOH HOH . D 4 HOH A 109 609 292 HOH HOH . D 4 HOH A 110 610 293 HOH HOH . D 4 HOH A 111 611 294 HOH HOH . D 4 HOH A 112 612 296 HOH HOH . D 4 HOH A 113 613 301 HOH HOH . D 4 HOH A 114 614 302 HOH HOH . D 4 HOH A 115 615 303 HOH HOH . D 4 HOH A 116 616 304 HOH HOH . D 4 HOH A 117 617 305 HOH HOH . D 4 HOH A 118 618 306 HOH HOH . D 4 HOH A 119 619 307 HOH HOH . D 4 HOH A 120 620 308 HOH HOH . D 4 HOH A 121 621 309 HOH HOH . D 4 HOH A 122 622 310 HOH HOH . D 4 HOH A 123 623 311 HOH HOH . D 4 HOH A 124 624 312 HOH HOH . D 4 HOH A 125 625 313 HOH HOH . D 4 HOH A 126 626 314 HOH HOH . D 4 HOH A 127 627 316 HOH HOH . D 4 HOH A 128 628 317 HOH HOH . D 4 HOH A 129 629 321 HOH HOH . D 4 HOH A 130 630 322 HOH HOH . D 4 HOH A 131 631 323 HOH HOH . D 4 HOH A 132 632 324 HOH HOH . D 4 HOH A 133 633 325 HOH HOH . D 4 HOH A 134 634 326 HOH HOH . D 4 HOH A 135 635 327 HOH HOH . D 4 HOH A 136 636 328 HOH HOH . D 4 HOH A 137 637 329 HOH HOH . D 4 HOH A 138 638 330 HOH HOH . D 4 HOH A 139 639 331 HOH HOH . D 4 HOH A 140 640 334 HOH HOH . D 4 HOH A 141 641 335 HOH HOH . D 4 HOH A 142 642 336 HOH HOH . D 4 HOH A 143 643 337 HOH HOH . D 4 HOH A 144 644 338 HOH HOH . D 4 HOH A 145 645 339 HOH HOH . D 4 HOH A 146 646 340 HOH HOH . D 4 HOH A 147 647 341 HOH HOH . D 4 HOH A 148 648 342 HOH HOH . D 4 HOH A 149 649 343 HOH HOH . D 4 HOH A 150 650 344 HOH HOH . D 4 HOH A 151 651 345 HOH HOH . D 4 HOH A 152 652 346 HOH HOH . D 4 HOH A 153 653 347 HOH HOH . D 4 HOH A 154 654 348 HOH HOH . D 4 HOH A 155 655 349 HOH HOH . D 4 HOH A 156 656 350 HOH HOH . D 4 HOH A 157 657 351 HOH HOH . D 4 HOH A 158 658 352 HOH HOH . D 4 HOH A 159 659 353 HOH HOH . D 4 HOH A 160 660 354 HOH HOH . D 4 HOH A 161 661 355 HOH HOH . D 4 HOH A 162 662 356 HOH HOH . D 4 HOH A 163 663 357 HOH HOH . D 4 HOH A 164 664 358 HOH HOH . D 4 HOH A 165 665 359 HOH HOH . D 4 HOH A 166 666 360 HOH HOH . D 4 HOH A 167 667 361 HOH HOH . D 4 HOH A 168 668 362 HOH HOH . D 4 HOH A 169 669 363 HOH HOH . D 4 HOH A 170 670 364 HOH HOH . D 4 HOH A 171 671 365 HOH HOH . D 4 HOH A 172 672 366 HOH HOH . D 4 HOH A 173 673 367 HOH HOH . D 4 HOH A 174 674 368 HOH HOH . D 4 HOH A 175 675 369 HOH HOH . D 4 HOH A 176 676 370 HOH HOH . D 4 HOH A 177 677 371 HOH HOH . D 4 HOH A 178 678 372 HOH HOH . D 4 HOH A 179 679 373 HOH HOH . D 4 HOH A 180 680 374 HOH HOH . D 4 HOH A 181 681 375 HOH HOH . D 4 HOH A 182 682 376 HOH HOH . D 4 HOH A 183 683 377 HOH HOH . D 4 HOH A 184 684 378 HOH HOH . D 4 HOH A 185 685 379 HOH HOH . D 4 HOH A 186 686 380 HOH HOH . D 4 HOH A 187 687 381 HOH HOH . D 4 HOH A 188 688 382 HOH HOH . D 4 HOH A 189 689 383 HOH HOH . D 4 HOH A 190 690 388 HOH HOH . D 4 HOH A 191 691 389 HOH HOH . D 4 HOH A 192 692 390 HOH HOH . D 4 HOH A 193 693 391 HOH HOH . D 4 HOH A 194 694 392 HOH HOH . D 4 HOH A 195 695 393 HOH HOH . D 4 HOH A 196 696 394 HOH HOH . D 4 HOH A 197 697 395 HOH HOH . D 4 HOH A 198 698 396 HOH HOH . D 4 HOH A 199 699 397 HOH HOH . D 4 HOH A 200 700 398 HOH HOH . D 4 HOH A 201 701 399 HOH HOH . D 4 HOH A 202 702 400 HOH HOH . D 4 HOH A 203 703 401 HOH HOH . D 4 HOH A 204 704 402 HOH HOH . D 4 HOH A 205 705 403 HOH HOH . D 4 HOH A 206 706 404 HOH HOH . D 4 HOH A 207 707 405 HOH HOH . D 4 HOH A 208 708 406 HOH HOH . D 4 HOH A 209 709 407 HOH HOH . D 4 HOH A 210 710 408 HOH HOH . D 4 HOH A 211 711 409 HOH HOH . D 4 HOH A 212 712 410 HOH HOH . D 4 HOH A 213 713 411 HOH HOH . D 4 HOH A 214 714 412 HOH HOH . D 4 HOH A 215 715 413 HOH HOH . D 4 HOH A 216 716 414 HOH HOH . D 4 HOH A 217 717 415 HOH HOH . D 4 HOH A 218 718 416 HOH HOH . D 4 HOH A 219 719 417 HOH HOH . D 4 HOH A 220 720 418 HOH HOH . D 4 HOH A 221 721 419 HOH HOH . D 4 HOH A 222 722 420 HOH HOH . D 4 HOH A 223 723 421 HOH HOH . D 4 HOH A 224 724 422 HOH HOH . D 4 HOH A 225 725 423 HOH HOH . D 4 HOH A 226 726 424 HOH HOH . D 4 HOH A 227 727 425 HOH HOH . D 4 HOH A 228 728 426 HOH HOH . D 4 HOH A 229 729 427 HOH HOH . D 4 HOH A 230 730 428 HOH HOH . D 4 HOH A 231 731 429 HOH HOH . D 4 HOH A 232 732 430 HOH HOH . D 4 HOH A 233 733 531 HOH HOH . D 4 HOH A 234 734 532 HOH HOH . D 4 HOH A 235 735 433 HOH HOH . D 4 HOH A 236 736 434 HOH HOH . D 4 HOH A 237 737 435 HOH HOH . D 4 HOH A 238 738 436 HOH HOH . D 4 HOH A 239 739 437 HOH HOH . D 4 HOH A 240 740 438 HOH HOH . D 4 HOH A 241 741 439 HOH HOH . D 4 HOH A 242 742 440 HOH HOH . D 4 HOH A 243 743 441 HOH HOH . D 4 HOH A 244 744 442 HOH HOH . D 4 HOH A 245 745 443 HOH HOH . D 4 HOH A 246 746 444 HOH HOH . D 4 HOH A 247 747 445 HOH HOH . D 4 HOH A 248 748 446 HOH HOH . D 4 HOH A 249 749 447 HOH HOH . D 4 HOH A 250 750 449 HOH HOH . D 4 HOH A 251 751 450 HOH HOH . D 4 HOH A 252 752 451 HOH HOH . D 4 HOH A 253 753 452 HOH HOH . D 4 HOH A 254 754 453 HOH HOH . D 4 HOH A 255 755 454 HOH HOH . D 4 HOH A 256 756 455 HOH HOH . D 4 HOH A 257 757 456 HOH HOH . D 4 HOH A 258 758 457 HOH HOH . D 4 HOH A 259 759 458 HOH HOH . D 4 HOH A 260 760 459 HOH HOH . D 4 HOH A 261 761 83 HOH HOH . D 4 HOH A 262 762 320 HOH HOH . D 4 HOH A 263 763 319 HOH HOH . D 4 HOH A 264 764 448 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 3 -13.707 -26.054 -55.271 1 23.33 ? S SO4 500 A 1 HETATM 2 O O1 SO4 . . . C 3 -13.466 -27.441 -55.435 1 22.93 ? O1 SO4 500 A 1 HETATM 3 O O2 SO4 . . . C 3 -12.511 -25.288 -55.218 1 21.6 ? O2 SO4 500 A 1 HETATM 4 O O3 SO4 . . . C 3 -14.376 -25.969 -54.032 1 26.35 ? O3 SO4 500 A 1 HETATM 5 O O4 SO4 . . . C 3 -14.469 -25.606 -56.385 1 24.94 ? O4 SO4 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #