data_1PNQ # _model_server_result.job_id JJNdEarCHJViJ7zOrDVUgA _model_server_result.datetime_utc '2024-11-24 13:55:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pnq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 1PNQ # _exptl.entry_id 1PNQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1PNQ _cell.length_a 118.27 _cell.length_b 118.27 _cell.length_c 212.83 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PNQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 224 n n PA O2A NDP sing 225 n n PA O5B NDP sing 226 n n PA O3 NDP sing 227 n n O2A HOA2 NDP sing 228 n n O5B C5B NDP sing 229 n n C5B C4B NDP sing 230 n n C5B H51A NDP sing 231 n n C5B H52A NDP sing 232 n n C4B O4B NDP sing 233 n n C4B C3B NDP sing 234 n n C4B H4B NDP sing 235 n n O4B C1B NDP sing 236 n n C3B O3B NDP sing 237 n n C3B C2B NDP sing 238 n n C3B H3B NDP sing 239 n n O3B HO3A NDP sing 240 n n C2B O2B NDP sing 241 n n C2B C1B NDP sing 242 n n C2B H2B NDP sing 243 n n O2B P2B NDP sing 244 n n C1B N9A NDP sing 245 n n C1B H1B NDP sing 246 n n N9A C8A NDP sing 247 n y N9A C4A NDP sing 248 n y C8A N7A NDP doub 249 n y C8A H8A NDP sing 250 n n N7A C5A NDP sing 251 n y C5A C6A NDP sing 252 n y C5A C4A NDP doub 253 n y C6A N6A NDP sing 254 n n C6A N1A NDP doub 255 n y N6A H61A NDP sing 256 n n N6A H62A NDP sing 257 n n N1A C2A NDP sing 258 n y C2A N3A NDP doub 259 n y C2A H2A NDP sing 260 n n N3A C4A NDP sing 261 n y O3 PN NDP sing 262 n n PN O1N NDP doub 263 n n PN O2N NDP sing 264 n n PN O5D NDP sing 265 n n O2N H21N NDP sing 266 n n O5D C5D NDP sing 267 n n C5D C4D NDP sing 268 n n C5D H51N NDP sing 269 n n C5D H52N NDP sing 270 n n C4D O4D NDP sing 271 n n C4D C3D NDP sing 272 n n C4D H4D NDP sing 273 n n O4D C1D NDP sing 274 n n C3D O3D NDP sing 275 n n C3D C2D NDP sing 276 n n C3D H3D NDP sing 277 n n O3D HO3N NDP sing 278 n n C2D O2D NDP sing 279 n n C2D C1D NDP sing 280 n n C2D H2D NDP sing 281 n n O2D HO2N NDP sing 282 n n C1D N1N NDP sing 283 n n C1D H1D NDP sing 284 n n N1N C2N NDP sing 285 n n N1N C6N NDP sing 286 n n C2N C3N NDP doub 287 n n C2N H2N NDP sing 288 n n C3N C7N NDP sing 289 n n C3N C4N NDP sing 290 n n C7N O7N NDP doub 291 n n C7N N7N NDP sing 292 n n N7N H71N NDP sing 293 n n N7N H72N NDP sing 294 n n C4N C5N NDP sing 295 n n C4N H41N NDP sing 296 n n C4N H42N NDP sing 297 n n C5N C6N NDP doub 298 n n C5N H5N NDP sing 299 n n C6N H6N NDP sing 300 n n P2B O1X NDP doub 301 n n P2B O2X NDP sing 302 n n P2B O3X NDP sing 303 n n O2X HOP2 NDP sing 304 n n O3X HOP3 NDP sing 305 n n # _atom_sites.entry_id 1PNQ _atom_sites.fract_transf_matrix[1][1] 0.008455 _atom_sites.fract_transf_matrix[1][2] 0.004882 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 500 465 NDP NDP . D 2 NDP B 1 500 465 NDP NDP . E 3 HOH A 1 1 1 HOH HOH . E 3 HOH A 2 5 5 HOH HOH . E 3 HOH A 3 6 6 HOH HOH . E 3 HOH A 4 7 7 HOH HOH . E 3 HOH A 5 8 8 HOH HOH . E 3 HOH A 6 9 9 HOH HOH . E 3 HOH A 7 13 13 HOH HOH . E 3 HOH A 8 14 14 HOH HOH . E 3 HOH A 9 15 15 HOH HOH . E 3 HOH A 10 17 17 HOH HOH . E 3 HOH A 11 19 19 HOH HOH . E 3 HOH A 12 22 22 HOH HOH . E 3 HOH A 13 24 24 HOH HOH . E 3 HOH A 14 26 26 HOH HOH . E 3 HOH A 15 30 30 HOH HOH . E 3 HOH A 16 31 31 HOH HOH . E 3 HOH A 17 32 32 HOH HOH . E 3 HOH A 18 34 34 HOH HOH . E 3 HOH A 19 37 37 HOH HOH . E 3 HOH A 20 38 38 HOH HOH . E 3 HOH A 21 40 40 HOH HOH . E 3 HOH A 22 44 44 HOH HOH . E 3 HOH A 23 45 45 HOH HOH . E 3 HOH A 24 46 46 HOH HOH . E 3 HOH A 25 47 47 HOH HOH . E 3 HOH A 26 48 48 HOH HOH . E 3 HOH A 27 49 49 HOH HOH . E 3 HOH A 28 50 50 HOH HOH . E 3 HOH A 29 51 51 HOH HOH . E 3 HOH A 30 52 52 HOH HOH . E 3 HOH A 31 53 53 HOH HOH . E 3 HOH A 32 54 54 HOH HOH . E 3 HOH A 33 55 55 HOH HOH . E 3 HOH A 34 56 56 HOH HOH . E 3 HOH A 35 57 57 HOH HOH . E 3 HOH A 36 59 59 HOH HOH . E 3 HOH A 37 60 60 HOH HOH . E 3 HOH A 38 61 61 HOH HOH . E 3 HOH A 39 62 62 HOH HOH . E 3 HOH A 40 63 63 HOH HOH . E 3 HOH A 41 64 64 HOH HOH . E 3 HOH A 42 65 65 HOH HOH . E 3 HOH A 43 74 74 HOH HOH . E 3 HOH A 44 75 75 HOH HOH . E 3 HOH A 45 76 76 HOH HOH . E 3 HOH A 46 77 77 HOH HOH . E 3 HOH A 47 85 85 HOH HOH . E 3 HOH A 48 86 86 HOH HOH . E 3 HOH A 49 87 87 HOH HOH . E 3 HOH A 50 88 88 HOH HOH . E 3 HOH A 51 90 90 HOH HOH . E 3 HOH A 52 91 91 HOH HOH . E 3 HOH A 53 92 92 HOH HOH . E 3 HOH A 54 93 93 HOH HOH . E 3 HOH A 55 94 94 HOH HOH . E 3 HOH A 56 95 95 HOH HOH . E 3 HOH A 57 96 96 HOH HOH . E 3 HOH A 58 97 97 HOH HOH . E 3 HOH A 59 98 98 HOH HOH . E 3 HOH A 60 99 99 HOH HOH . E 3 HOH A 61 100 100 HOH HOH . E 3 HOH A 62 101 101 HOH HOH . E 3 HOH A 63 102 102 HOH HOH . E 3 HOH A 64 103 103 HOH HOH . E 3 HOH A 65 104 104 HOH HOH . E 3 HOH A 66 105 105 HOH HOH . E 3 HOH A 67 106 106 HOH HOH . E 3 HOH A 68 107 107 HOH HOH . E 3 HOH A 69 108 108 HOH HOH . E 3 HOH A 70 118 118 HOH HOH . E 3 HOH A 71 119 119 HOH HOH . E 3 HOH A 72 120 120 HOH HOH . E 3 HOH A 73 121 121 HOH HOH . E 3 HOH A 74 122 122 HOH HOH . E 3 HOH A 75 126 126 HOH HOH . E 3 HOH A 76 127 127 HOH HOH . E 3 HOH A 77 128 128 HOH HOH . E 3 HOH A 78 129 129 HOH HOH . E 3 HOH A 79 130 130 HOH HOH . E 3 HOH A 80 131 131 HOH HOH . E 3 HOH A 81 133 133 HOH HOH . E 3 HOH A 82 134 134 HOH HOH . E 3 HOH A 83 136 136 HOH HOH . E 3 HOH A 84 141 141 HOH HOH . E 3 HOH A 85 142 142 HOH HOH . E 3 HOH A 86 143 143 HOH HOH . E 3 HOH A 87 144 144 HOH HOH . E 3 HOH A 88 145 145 HOH HOH . E 3 HOH A 89 146 146 HOH HOH . E 3 HOH A 90 147 147 HOH HOH . E 3 HOH A 91 148 148 HOH HOH . E 3 HOH A 92 149 149 HOH HOH . E 3 HOH A 93 150 150 HOH HOH . E 3 HOH A 94 151 151 HOH HOH . E 3 HOH A 95 152 152 HOH HOH . E 3 HOH A 96 153 153 HOH HOH . E 3 HOH A 97 154 154 HOH HOH . E 3 HOH A 98 166 166 HOH HOH . F 3 HOH B 1 2 2 HOH HOH . F 3 HOH B 2 3 3 HOH HOH . F 3 HOH B 3 4 4 HOH HOH . F 3 HOH B 4 10 10 HOH HOH . F 3 HOH B 5 11 11 HOH HOH . F 3 HOH B 6 12 12 HOH HOH . F 3 HOH B 7 16 16 HOH HOH . F 3 HOH B 8 18 18 HOH HOH . F 3 HOH B 9 20 20 HOH HOH . F 3 HOH B 10 21 21 HOH HOH . F 3 HOH B 11 23 23 HOH HOH . F 3 HOH B 12 25 25 HOH HOH . F 3 HOH B 13 27 27 HOH HOH . F 3 HOH B 14 28 28 HOH HOH . F 3 HOH B 15 29 29 HOH HOH . F 3 HOH B 16 33 33 HOH HOH . F 3 HOH B 17 35 35 HOH HOH . F 3 HOH B 18 36 36 HOH HOH . F 3 HOH B 19 39 39 HOH HOH . F 3 HOH B 20 41 41 HOH HOH . F 3 HOH B 21 42 42 HOH HOH . F 3 HOH B 22 43 43 HOH HOH . F 3 HOH B 23 58 58 HOH HOH . F 3 HOH B 24 66 66 HOH HOH . F 3 HOH B 25 67 67 HOH HOH . F 3 HOH B 26 68 68 HOH HOH . F 3 HOH B 27 69 69 HOH HOH . F 3 HOH B 28 70 70 HOH HOH . F 3 HOH B 29 71 71 HOH HOH . F 3 HOH B 30 72 72 HOH HOH . F 3 HOH B 31 73 73 HOH HOH . F 3 HOH B 32 78 78 HOH HOH . F 3 HOH B 33 79 79 HOH HOH . F 3 HOH B 34 80 80 HOH HOH . F 3 HOH B 35 81 81 HOH HOH . F 3 HOH B 36 82 82 HOH HOH . F 3 HOH B 37 83 83 HOH HOH . F 3 HOH B 38 84 84 HOH HOH . F 3 HOH B 39 89 89 HOH HOH . F 3 HOH B 40 109 109 HOH HOH . F 3 HOH B 41 110 110 HOH HOH . F 3 HOH B 42 111 111 HOH HOH . F 3 HOH B 43 112 112 HOH HOH . F 3 HOH B 44 113 113 HOH HOH . F 3 HOH B 45 114 114 HOH HOH . F 3 HOH B 46 115 115 HOH HOH . F 3 HOH B 47 116 116 HOH HOH . F 3 HOH B 48 117 117 HOH HOH . F 3 HOH B 49 123 123 HOH HOH . F 3 HOH B 50 124 124 HOH HOH . F 3 HOH B 51 125 125 HOH HOH . F 3 HOH B 52 135 135 HOH HOH . F 3 HOH B 53 137 137 HOH HOH . F 3 HOH B 54 138 138 HOH HOH . F 3 HOH B 55 139 139 HOH HOH . F 3 HOH B 56 140 140 HOH HOH . F 3 HOH B 57 155 155 HOH HOH . F 3 HOH B 58 156 156 HOH HOH . F 3 HOH B 59 157 157 HOH HOH . F 3 HOH B 60 158 158 HOH HOH . F 3 HOH B 61 159 159 HOH HOH . F 3 HOH B 62 160 160 HOH HOH . F 3 HOH B 63 161 161 HOH HOH . F 3 HOH B 64 162 162 HOH HOH . F 3 HOH B 65 163 163 HOH HOH . F 3 HOH B 66 164 164 HOH HOH . F 3 HOH B 67 165 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . D 2 -4.967 45.712 31.586 1 48.75 ? PA NDP 500 B 1 HETATM 2 O O1A NDP . . . D 2 -5.291 45.313 32.964 1 48.07 ? O1A NDP 500 B 1 HETATM 3 O O2A NDP . . . D 2 -3.57 45.675 31.102 1 48.45 ? O2A NDP 500 B 1 HETATM 4 O O5B NDP . . . D 2 -5.89 44.821 30.617 1 48.54 ? O5B NDP 500 B 1 HETATM 5 C C5B NDP . . . D 2 -6.995 44.882 30.485 1 48.71 ? C5B NDP 500 B 1 HETATM 6 C C4B NDP . . . D 2 -7.709 43.698 30.097 1 50.3 ? C4B NDP 500 B 1 HETATM 7 O O4B NDP . . . D 2 -8.062 43.954 28.684 1 46.01 ? O4B NDP 500 B 1 HETATM 8 C C3B NDP . . . D 2 -6.985 42.431 29.959 1 50.38 ? C3B NDP 500 B 1 HETATM 9 O O3B NDP . . . D 2 -7.088 41.648 31.196 1 54.51 ? O3B NDP 500 B 1 HETATM 10 C C2B NDP . . . D 2 -7.446 41.687 28.785 1 48.44 ? C2B NDP 500 B 1 HETATM 11 O O2B NDP . . . D 2 -7.885 40.398 28.771 1 48.6 ? O2B NDP 500 B 1 HETATM 12 C C1B NDP . . . D 2 -8.471 42.58 28.228 1 44.97 ? C1B NDP 500 B 1 HETATM 13 N N9A NDP . . . D 2 -8.612 42.66 26.659 1 42.1 ? N9A NDP 500 B 1 HETATM 14 C C8A NDP . . . D 2 -7.554 42.723 25.735 1 41.1 ? C8A NDP 500 B 1 HETATM 15 N N7A NDP . . . D 2 -8.021 42.771 24.49 1 38.91 ? N7A NDP 500 B 1 HETATM 16 C C5A NDP . . . D 2 -9.387 42.739 24.531 1 37.28 ? C5A NDP 500 B 1 HETATM 17 C C6A NDP . . . D 2 -10.515 42.748 23.638 1 37.75 ? C6A NDP 500 B 1 HETATM 18 N N6A NDP . . . D 2 -10.321 42.799 22.31 1 36.92 ? N6A NDP 500 B 1 HETATM 19 N N1A NDP . . . D 2 -11.792 42.701 24.138 1 36.12 ? N1A NDP 500 B 1 HETATM 20 C C2A NDP . . . D 2 -12.054 42.643 25.494 1 38.28 ? C2A NDP 500 B 1 HETATM 21 N N3A NDP . . . D 2 -11.089 42.622 26.44 1 40.35 ? N3A NDP 500 B 1 HETATM 22 C C4A NDP . . . D 2 -9.804 42.667 25.983 1 40.82 ? C4A NDP 500 B 1 HETATM 23 O O3 NDP . . . D 2 -5.441 47.216 31.23 1 49.31 ? O3 NDP 500 B 1 HETATM 24 P PN NDP . . . D 2 -5.959 48.406 32.328 1 50 ? PN NDP 500 B 1 HETATM 25 O O1N NDP . . . D 2 -6.993 47.988 33.292 1 52.35 ? O1N NDP 500 B 1 HETATM 26 O O2N NDP . . . D 2 -6.258 49.513 31.394 1 51.12 ? O2N NDP 500 B 1 HETATM 27 O O5D NDP . . . D 2 -4.509 48.507 32.82 1 52.9 ? O5D NDP 500 B 1 HETATM 28 C C5D NDP . . . D 2 -3.364 49.175 32.382 1 52.43 ? C5D NDP 500 B 1 HETATM 29 C C4D NDP . . . D 2 -1.996 48.676 32.72 1 52.76 ? C4D NDP 500 B 1 HETATM 30 O O4D NDP . . . D 2 -0.903 49.074 31.847 1 53.28 ? O4D NDP 500 B 1 HETATM 31 C C3D NDP . . . D 2 -1.704 48.9 34.213 1 53.05 ? C3D NDP 500 B 1 HETATM 32 O O3D NDP . . . D 2 -1.078 47.807 34.945 1 55.18 ? O3D NDP 500 B 1 HETATM 33 C C2D NDP . . . D 2 -0.786 50.152 34.009 1 52.56 ? C2D NDP 500 B 1 HETATM 34 O O2D NDP . . . D 2 0.001 50.593 35.056 1 55.49 ? O2D NDP 500 B 1 HETATM 35 C C1D NDP . . . D 2 0.047 49.707 32.777 1 52.27 ? C1D NDP 500 B 1 HETATM 36 N N1N NDP . . . D 2 0.685 50.732 31.833 1 53.4 ? N1N NDP 500 B 1 HETATM 37 C C2N NDP . . . D 2 0.058 51.964 31.52 1 51.49 ? C2N NDP 500 B 1 HETATM 38 C C3N NDP . . . D 2 0.69 52.886 30.628 1 51.38 ? C3N NDP 500 B 1 HETATM 39 C C7N NDP . . . D 2 0.028 54.177 30.317 1 52.05 ? C7N NDP 500 B 1 HETATM 40 O O7N NDP . . . D 2 0.689 55.186 30.073 1 52.72 ? O7N NDP 500 B 1 HETATM 41 N N7N NDP . . . D 2 -1.324 54.11 30.332 1 50.96 ? N7N NDP 500 B 1 HETATM 42 C C4N NDP . . . D 2 1.902 52.504 29.924 1 51.92 ? C4N NDP 500 B 1 HETATM 43 C C5N NDP . . . D 2 2.594 51.361 30.346 1 52.34 ? C5N NDP 500 B 1 HETATM 44 C C6N NDP . . . D 2 1.969 50.487 31.206 1 51.59 ? C6N NDP 500 B 1 HETATM 45 P P2B NDP . . . D 2 -8.42 39.23 27.816 1 52.89 ? P2B NDP 500 B 1 HETATM 46 O O1X NDP . . . D 2 -7.281 38.698 27.032 1 54.6 ? O1X NDP 500 B 1 HETATM 47 O O2X NDP . . . D 2 -8.988 38.265 28.76 1 53.14 ? O2X NDP 500 B 1 HETATM 48 O O3X NDP . . . D 2 -9.436 39.785 26.97 1 53.45 ? O3X NDP 500 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #