data_1PO1 # _model_server_result.job_id NC9JD3lrKcC20tjvI2qFeg _model_server_result.datetime_utc '2024-11-22 04:35:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1po1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1}' # _entry.id 1PO1 # _exptl.entry_id 1PO1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PO1 _cell.length_a 322.94 _cell.length_b 358.04 _cell.length_c 380.15 _cell.Z_PDB 120 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PO1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 300-MERIC 300 'complete icosahedral assembly' 1 ? pentameric 5 'icosahedral asymmetric unit' 2 ? 25-meric 25 'icosahedral pentamer' 3 ? 30-meric 30 'icosahedral 23 hexamer' 4 ? pentameric 5 'icosahedral asymmetric unit, std point frame' 5 ? 150-meric 150 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 (1-60) A,B,C,D,E,F,G 2 1 A,B,C,D,E,F,G 3 (1-5) A,B,C,D,E,F,G 4 (1,2,6,10,23,24) A,B,C,D,E,F,G 5 P A,B,C,D,E,F,G 6 (X0)(1-5,11-15,21-30,41-50) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 P 'transform to point frame' ? ? 0.999243 0.03881 0 -0.03881 0.999243 0 0 0 1 0 0 94.95028 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.309305 -0.816423 0.487632 0.801611 0.499712 0.32819 -0.511614 0.289378 0.809017 46.3008 31.16175 -18.13389 3 'point symmetry operation' ? ? -0.808264 -0.51939 0.277387 0.48061 -0.30977 0.820403 -0.340181 0.796412 0.5 26.338 77.89751 -47.47514 4 'point symmetry operation' ? ? -0.808264 0.48061 -0.340183 -0.51939 -0.30977 0.796417 0.277385 0.820398 0.5 -32.30049 75.62004 -47.47514 5 'point symmetry operation' ? ? 0.309305 0.801611 -0.511618 -0.816423 0.499712 0.28938 0.487629 0.328188 0.809017 -48.57827 27.47673 -18.13389 6 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 0 0 0 7 'point symmetry operation' ? ? -0.309305 0.816423 -0.487632 -0.801611 -0.499712 -0.32819 -0.511614 0.289378 0.809017 -46.3008 -31.16175 -18.13389 8 'point symmetry operation' ? ? 0.808264 0.51939 -0.277387 -0.48061 0.30977 -0.820403 -0.340181 0.796412 0.5 -26.338 -77.89751 -47.47514 9 'point symmetry operation' ? ? 0.808264 -0.48061 0.340183 0.51939 0.30977 -0.796417 0.277385 0.820398 0.5 32.30049 -75.62004 -47.47514 10 'point symmetry operation' ? ? -0.309305 -0.801611 0.511618 0.816423 -0.499712 -0.28938 0.487629 0.328188 0.809017 48.57827 -27.47673 -18.13389 11 'point symmetry operation' ? ? -0.996988 -0.077561 0 -0.077561 0.996988 0 0 0 -1 0 0 -189.90056 12 'point symmetry operation' ? ? -0.370547 0.775206 -0.511618 0.775206 0.56153 0.28938 0.511614 -0.289378 -0.809017 -48.57827 27.47673 -171.76667 13 'point symmetry operation' ? ? 0.768552 0.541852 -0.340183 0.541852 -0.268552 0.796417 0.340181 -0.796412 -0.5 -32.30049 75.62004 -142.42542 14 'point symmetry operation' ? ? 0.846114 -0.455136 0.277387 -0.455136 -0.346114 0.820403 -0.277385 -0.820398 -0.5 26.338 77.89751 -142.42542 15 'point symmetry operation' ? ? -0.24505 -0.837954 0.487632 -0.837954 0.436033 0.32819 -0.487629 -0.328188 -0.809017 46.3008 31.16175 -171.76667 16 'point symmetry operation' ? ? 0.996988 0.077561 0 0.077561 -0.996988 0 0 0 -1 0 0 -189.90056 17 'point symmetry operation' ? ? 0.370547 -0.775206 0.511618 -0.775206 -0.56153 -0.28938 0.511614 -0.289378 -0.809017 48.57827 -27.47673 -171.76667 18 'point symmetry operation' ? ? -0.768552 -0.541852 0.340183 -0.541852 0.268552 -0.796417 0.340181 -0.796412 -0.5 32.30049 -75.62004 -142.42542 19 'point symmetry operation' ? ? -0.846114 0.455136 -0.277387 0.455136 0.346114 -0.820403 -0.277385 -0.820398 -0.5 -26.338 -77.89751 -142.42542 20 'point symmetry operation' ? ? 0.24505 0.837954 -0.487632 0.837954 -0.436033 -0.32819 -0.487629 -0.328188 -0.809017 -46.3008 -31.16175 -171.76667 21 'point symmetry operation' ? ? -0.038781 -0.001506 0.99925 0.998494 0.038781 0.03881 -0.03881 0.999243 0 94.87907 3.68502 -94.95028 22 'point symmetry operation' ? ? -0.524433 0.32007 0.789005 0.32007 -0.784584 0.531023 0.789 0.531019 0.309017 74.91627 50.42078 -65.60903 23 'point symmetry operation' ? ? -0.309305 0.816423 0.487632 -0.801611 -0.499712 0.32819 0.511614 -0.289378 0.809017 46.3008 31.16175 -18.13389 24 'point symmetry operation' ? ? 0.309305 0.801611 0.511618 -0.816423 0.499712 -0.28938 -0.487629 -0.328188 0.809017 48.57827 -27.47673 -18.13389 25 'point symmetry operation' ? ? 0.476498 0.296102 0.827815 0.296102 0.832519 -0.468227 -0.82781 0.468224 0.309017 78.60129 -44.45829 -65.60903 26 'point symmetry operation' ? ? 0.038781 0.001506 0.99925 -0.998494 -0.038781 0.03881 0.03881 -0.999243 0 94.87907 3.68502 -94.95028 27 'point symmetry operation' ? ? -0.498028 0.258252 0.827815 -0.359781 0.807045 -0.468227 -0.789 -0.531019 -0.309017 78.60129 -44.45829 -124.29153 28 'point symmetry operation' ? ? -0.370547 0.775206 0.511618 0.775206 0.56153 -0.28938 -0.511614 0.289378 -0.809017 48.57827 -27.47673 -171.76667 29 'point symmetry operation' ? ? 0.24505 0.837954 0.487632 0.837954 -0.436033 0.32819 0.487629 0.328188 -0.809017 46.3008 31.16175 -171.76667 30 'point symmetry operation' ? ? 0.498028 0.359782 0.789005 -0.258252 -0.807045 0.531023 0.82781 -0.468224 -0.309017 74.91627 50.42078 -124.29153 31 'point symmetry operation' ? ? 0.038781 0.001506 -0.99925 -0.998494 -0.038781 -0.03881 -0.03881 0.999243 0 -94.87907 -3.68502 -94.95028 32 'point symmetry operation' ? ? 0.524433 -0.32007 -0.789005 -0.32007 0.784584 -0.531023 0.789 0.531019 0.309017 -74.91627 -50.42078 -65.60903 33 'point symmetry operation' ? ? 0.309305 -0.816423 -0.487632 0.801611 0.499712 -0.32819 0.511614 -0.289378 0.809017 -46.3008 -31.16175 -18.13389 34 'point symmetry operation' ? ? -0.309305 -0.801611 -0.511618 0.816423 -0.499712 0.28938 -0.487629 -0.328188 0.809017 -48.57827 27.47673 -18.13389 35 'point symmetry operation' ? ? -0.476498 -0.296102 -0.827815 -0.296102 -0.832519 0.468227 -0.82781 0.468224 0.309017 -78.60129 44.45829 -65.60903 36 'point symmetry operation' ? ? -0.038781 -0.001506 -0.99925 0.998494 0.038781 -0.03881 0.03881 -0.999243 0 -94.87907 -3.68502 -94.95028 37 'point symmetry operation' ? ? 0.498028 -0.258252 -0.827815 0.359782 -0.807045 0.468227 -0.789 -0.531019 -0.309017 -78.60129 44.45829 -124.29153 38 'point symmetry operation' ? ? 0.370547 -0.775206 -0.511618 -0.775206 -0.56153 0.28938 -0.511614 0.289378 -0.809017 -48.57827 27.47673 -171.76667 39 'point symmetry operation' ? ? -0.24505 -0.837954 -0.487632 -0.837954 0.436033 -0.32819 0.487629 0.328188 -0.809017 -46.3008 -31.16175 -171.76667 40 'point symmetry operation' ? ? -0.498028 -0.359781 -0.789005 0.258252 0.807045 -0.531023 0.82781 -0.468224 -0.309017 -74.91627 -50.42078 -124.29153 41 'point symmetry operation' ? ? -0.038781 0.998494 -0.03881 -0.001506 0.038781 0.99925 0.999243 0.03881 0 -3.68502 94.87907 -94.95028 42 'point symmetry operation' ? ? 0.808264 0.51939 0.277387 -0.48061 0.30977 0.820403 0.340181 -0.796412 0.5 26.338 77.89751 -47.47514 43 'point symmetry operation' ? ? 0.524433 -0.32007 0.789005 -0.32007 0.784584 0.531023 -0.789 -0.531019 0.309017 74.91627 50.42078 -65.60903 44 'point symmetry operation' ? ? -0.498028 -0.359781 0.789005 0.258252 0.807045 0.531023 -0.82781 0.468224 -0.309017 74.91627 50.42078 -124.29153 45 'point symmetry operation' ? ? -0.846114 0.455136 0.277387 0.455136 0.346114 0.820403 0.277385 0.820398 -0.5 26.338 77.89751 -142.42542 46 'point symmetry operation' ? ? 0.038781 -0.998494 -0.03881 0.001506 -0.038781 0.99925 -0.999243 -0.03881 0 -3.68502 94.87907 -94.95028 47 'point symmetry operation' ? ? -0.768552 -0.541852 -0.340183 -0.541852 0.268552 0.796417 -0.340181 0.796412 -0.5 -32.30049 75.62004 -142.42542 48 'point symmetry operation' ? ? -0.498028 0.258252 -0.827815 -0.359781 0.807045 0.468227 0.789 0.531019 -0.309017 -78.60129 44.45829 -124.29153 49 'point symmetry operation' ? ? 0.476498 0.296102 -0.827815 0.296102 0.832519 0.468227 0.82781 -0.468224 0.309017 -78.60129 44.45829 -65.60903 50 'point symmetry operation' ? ? 0.808264 -0.48061 -0.340183 0.51939 0.30977 0.796417 -0.277385 -0.820398 0.5 -32.30049 75.62004 -47.47514 51 'point symmetry operation' ? ? -0.038781 0.998494 0.03881 -0.001506 0.038781 -0.99925 -0.999243 -0.03881 0 3.68502 -94.87907 -94.95028 52 'point symmetry operation' ? ? 0.768552 0.541852 0.340183 0.541852 -0.268552 -0.796417 -0.340181 0.796412 -0.5 32.30049 -75.62004 -142.42542 53 'point symmetry operation' ? ? 0.498028 -0.258252 0.827815 0.359782 -0.807045 -0.468227 0.789 0.531019 -0.309017 78.60129 -44.45829 -124.29153 54 'point symmetry operation' ? ? -0.476498 -0.296102 0.827815 -0.296102 -0.832519 -0.468227 0.82781 -0.468224 0.309017 78.60129 -44.45829 -65.60903 55 'point symmetry operation' ? ? -0.808264 0.48061 0.340183 -0.51939 -0.30977 -0.796417 -0.277385 -0.820398 0.5 32.30049 -75.62004 -47.47514 56 'point symmetry operation' ? ? 0.038781 -0.998494 0.03881 0.001506 -0.038781 -0.99925 0.999243 0.03881 0 3.68502 -94.87907 -94.95028 57 'point symmetry operation' ? ? -0.808264 -0.51939 -0.277387 0.48061 -0.30977 -0.820403 0.340181 -0.796412 0.5 -26.338 -77.89751 -47.47514 58 'point symmetry operation' ? ? -0.524433 0.32007 -0.789005 0.32007 -0.784584 -0.531023 -0.789 -0.531019 0.309017 -74.91627 -50.42078 -65.60903 59 'point symmetry operation' ? ? 0.498028 0.359782 -0.789005 -0.258252 -0.807045 -0.531023 -0.82781 0.468224 -0.309017 -74.91627 -50.42078 -124.29153 60 'point symmetry operation' ? ? 0.846114 -0.455136 -0.277387 -0.455136 -0.346114 -0.820403 0.277385 0.820398 -0.5 -26.338 -77.89751 -142.42542 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id G _struct_conn.ptnr1_label_atom_id C1 _struct_conn.ptnr1_label_comp_id MYR _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id 4 _struct_conn.ptnr1_auth_comp_id MYR _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id GLY _struct_conn.ptnr2_label_seq_id 1 _struct_conn.ptnr2_auth_asym_id 4 _struct_conn.ptnr2_auth_comp_id GLY _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.33 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 297 n n C1 O2 MYR sing 298 n n C1 C2 MYR sing 299 n n O2 HO2 MYR sing 300 n n C2 C3 MYR sing 301 n n C2 H21 MYR sing 302 n n C2 H22 MYR sing 303 n n C3 C4 MYR sing 304 n n C3 H31 MYR sing 305 n n C3 H32 MYR sing 306 n n C4 C5 MYR sing 307 n n C4 H41 MYR sing 308 n n C4 H42 MYR sing 309 n n C5 C6 MYR sing 310 n n C5 H51 MYR sing 311 n n C5 H52 MYR sing 312 n n C6 C7 MYR sing 313 n n C6 H61 MYR sing 314 n n C6 H62 MYR sing 315 n n C7 C8 MYR sing 316 n n C7 H71 MYR sing 317 n n C7 H72 MYR sing 318 n n C8 C9 MYR sing 319 n n C8 H81 MYR sing 320 n n C8 H82 MYR sing 321 n n C9 C10 MYR sing 322 n n C9 H91 MYR sing 323 n n C9 H92 MYR sing 324 n n C10 C11 MYR sing 325 n n C10 H101 MYR sing 326 n n C10 H102 MYR sing 327 n n C11 C12 MYR sing 328 n n C11 H111 MYR sing 329 n n C11 H112 MYR sing 330 n n C12 C13 MYR sing 331 n n C12 H121 MYR sing 332 n n C12 H122 MYR sing 333 n n C13 C14 MYR sing 334 n n C13 H131 MYR sing 335 n n C13 H132 MYR sing 336 n n C14 H141 MYR sing 337 n n C14 H142 MYR sing 338 n n C14 H143 MYR sing 339 n n # _atom_sites.entry_id 1PO1 _atom_sites.fract_transf_matrix[1][1] 0.003097 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 J80 1 1 0 0 J80 J80 . G 7 MYR 4 1 1 1 MYR MYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . G 7 5.657 54.156 -5.515 1 34.74 ? C1 MYR 1 4 1 HETATM 2 O O1 MYR . . . G 7 5.746 54.582 -4.378 1 36.01 ? O1 MYR 1 4 1 HETATM 3 C C2 MYR . . . G 7 4.618 54.67 -6.459 1 36.14 ? C2 MYR 1 4 1 HETATM 4 C C3 MYR . . . G 7 3.245 54.865 -5.822 1 39.2 ? C3 MYR 1 4 1 HETATM 5 C C4 MYR . . . G 7 3.132 56.029 -4.832 1 42.8 ? C4 MYR 1 4 1 HETATM 6 C C5 MYR . . . G 7 1.801 55.953 -4.09 1 46.03 ? C5 MYR 1 4 1 HETATM 7 C C6 MYR . . . G 7 1.43 57.18 -3.236 1 49.4 ? C6 MYR 1 4 1 HETATM 8 C C7 MYR . . . G 7 2.445 57.422 -2.109 1 51.99 ? C7 MYR 1 4 1 HETATM 9 C C8 MYR . . . G 7 1.83 58.174 -0.906 1 53.41 ? C8 MYR 1 4 1 HETATM 10 C C9 MYR . . . G 7 2.437 59.548 -0.726 1 55.4 ? C9 MYR 1 4 1 HETATM 11 C C10 MYR . . . G 7 3.949 59.475 -0.512 1 57.2 ? C10 MYR 1 4 1 HETATM 12 C C11 MYR . . . G 7 4.517 60.87 -0.655 1 59.56 ? C11 MYR 1 4 1 HETATM 13 C C12 MYR . . . G 7 6.028 60.88 -0.709 1 60.92 ? C12 MYR 1 4 1 HETATM 14 C C13 MYR . . . G 7 6.718 60.943 0.648 1 61.13 ? C13 MYR 1 4 1 HETATM 15 C C14 MYR . . . G 7 7.75 62.088 0.707 1 60.78 ? C14 MYR 1 4 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 15 #