data_1PO8
#
_model_server_result.job_id            uFWYu5qKY-1rf3-AeUDbgQ 
_model_server_result.datetime_utc      '2024-12-26 18:25:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1po8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":121}' 
#
_entry.id    1PO8 
#
_exptl.entry_id    1PO8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1PO8 
_cell.length_a            53.79 
_cell.length_b            53.79 
_cell.length_c            82.5 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1PO8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 70 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 25 A CYS 27 1_555 A SG CYS 117 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf3 A SG CYS 27 A CYS 29 1_555 A SG CYS 43 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 A SG CYS 42 A CYS 44 1_555 A SG CYS 98 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf5 A SG CYS 49 A CYS 51 1_555 A SG CYS 91 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf6 A SG CYS 59 A CYS 61 1_555 A SG CYS 84 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 A SG CYS 77 A CYS 79 1_555 A SG CYS 89 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc1 A O TYR 26 A TYR 28 1_555 B NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? 
metalc ? metalc2 A O GLY 28 A GLY 30 1_555 B NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
metalc ? metalc3 A O GLY 30 A GLY 32 1_555 B NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc4 A OD2 ASP 47 A ASP 49 1_555 B NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc5 A OD1 ASP 47 A ASP 49 1_555 B NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1PO8 
_atom_sites.fract_transf_matrix[1][1]    0.018591 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018591 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012121 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 121 68 NA NA . 
C 3 SHV A 1 122 69 SHV SHV . 
D 4 HOH A 1 123 1 HOH HOH . 
D 4 HOH A 2 124 2 HOH HOH . 
D 4 HOH A 3 125 3 HOH HOH . 
D 4 HOH A 4 126 4 HOH HOH . 
D 4 HOH A 5 127 5 HOH HOH . 
D 4 HOH A 6 128 6 HOH HOH . 
D 4 HOH A 7 129 7 HOH HOH . 
D 4 HOH A 8 130 8 HOH HOH . 
D 4 HOH A 9 131 9 HOH HOH . 
D 4 HOH A 10 132 10 HOH HOH . 
D 4 HOH A 11 133 11 HOH HOH . 
D 4 HOH A 12 134 13 HOH HOH . 
D 4 HOH A 13 135 14 HOH HOH . 
D 4 HOH A 14 136 15 HOH HOH . 
D 4 HOH A 15 137 17 HOH HOH . 
D 4 HOH A 16 138 18 HOH HOH . 
D 4 HOH A 17 139 19 HOH HOH . 
D 4 HOH A 18 140 20 HOH HOH . 
D 4 HOH A 19 141 21 HOH HOH . 
D 4 HOH A 20 142 22 HOH HOH . 
D 4 HOH A 21 143 23 HOH HOH . 
D 4 HOH A 22 144 24 HOH HOH . 
D 4 HOH A 23 145 25 HOH HOH . 
D 4 HOH A 24 146 27 HOH HOH . 
D 4 HOH A 25 147 28 HOH HOH . 
D 4 HOH A 26 148 29 HOH HOH . 
D 4 HOH A 27 149 30 HOH HOH . 
D 4 HOH A 28 150 31 HOH HOH . 
D 4 HOH A 29 151 32 HOH HOH . 
D 4 HOH A 30 152 33 HOH HOH . 
D 4 HOH A 31 153 34 HOH HOH . 
D 4 HOH A 32 154 35 HOH HOH . 
D 4 HOH A 33 155 36 HOH HOH . 
D 4 HOH A 34 156 37 HOH HOH . 
D 4 HOH A 35 157 39 HOH HOH . 
D 4 HOH A 36 158 40 HOH HOH . 
D 4 HOH A 37 159 41 HOH HOH . 
D 4 HOH A 38 160 42 HOH HOH . 
D 4 HOH A 39 161 43 HOH HOH . 
D 4 HOH A 40 162 44 HOH HOH . 
D 4 HOH A 41 163 46 HOH HOH . 
D 4 HOH A 42 164 47 HOH HOH . 
D 4 HOH A 43 165 48 HOH HOH . 
D 4 HOH A 44 166 49 HOH HOH . 
D 4 HOH A 45 167 50 HOH HOH . 
D 4 HOH A 46 168 51 HOH HOH . 
D 4 HOH A 47 169 52 HOH HOH . 
D 4 HOH A 48 170 53 HOH HOH . 
D 4 HOH A 49 171 55 HOH HOH . 
D 4 HOH A 50 172 56 HOH HOH . 
D 4 HOH A 51 173 57 HOH HOH . 
D 4 HOH A 52 174 58 HOH HOH . 
D 4 HOH A 53 175 59 HOH HOH . 
D 4 HOH A 54 176 60 HOH HOH . 
D 4 HOH A 55 177 61 HOH HOH . 
D 4 HOH A 56 178 62 HOH HOH . 
D 4 HOH A 57 179 63 HOH HOH . 
D 4 HOH A 58 180 64 HOH HOH . 
D 4 HOH A 59 181 65 HOH HOH . 
D 4 HOH A 60 182 66 HOH HOH . 
D 4 HOH A 61 183 67 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -3.947 
_atom_site.Cartn_y               31.962 
_atom_site.Cartn_z               3.721 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        33.9 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           121 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#