data_1PO8 # _model_server_result.job_id q60jbHawPPO7YPfGQZBSug _model_server_result.datetime_utc '2024-12-26 18:26:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1po8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":122}' # _entry.id 1PO8 # _exptl.entry_id 1PO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 130.185 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEPTANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PO8 _cell.length_a 53.79 _cell.length_b 53.79 _cell.length_c 82.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 70 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 25 A CYS 27 1_555 A SG CYS 117 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 27 A CYS 29 1_555 A SG CYS 43 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 42 A CYS 44 1_555 A SG CYS 98 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 A SG CYS 49 A CYS 51 1_555 A SG CYS 91 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 A SG CYS 59 A CYS 61 1_555 A SG CYS 84 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 A SG CYS 77 A CYS 79 1_555 A SG CYS 89 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A O TYR 26 A TYR 28 1_555 B NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc2 A O GLY 28 A GLY 30 1_555 B NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc3 A O GLY 30 A GLY 32 1_555 B NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc4 A OD2 ASP 47 A ASP 49 1_555 B NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc5 A OD1 ASP 47 A ASP 49 1_555 B NA NA . A NA 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? # _chem_comp.formula 'C7 H14 O2' _chem_comp.formula_weight 130.185 _chem_comp.id SHV _chem_comp.mon_nstd_flag . _chem_comp.name 'HEPTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SHV sing 290 n n C1 O2 SHV doub 291 n n C1 C2 SHV sing 292 n n O1 HO1 SHV sing 293 n n C2 C3 SHV sing 294 n n C2 H21 SHV sing 295 n n C2 H22 SHV sing 296 n n C3 C4 SHV sing 297 n n C3 H31 SHV sing 298 n n C3 H32 SHV sing 299 n n C4 C5 SHV sing 300 n n C4 H41 SHV sing 301 n n C4 H42 SHV sing 302 n n C5 C6 SHV sing 303 n n C5 H51 SHV sing 304 n n C5 H52 SHV sing 305 n n C6 C7 SHV sing 306 n n C6 H61 SHV sing 307 n n C6 H62 SHV sing 308 n n C7 H71 SHV sing 309 n n C7 H72 SHV sing 310 n n C7 H73 SHV sing 311 n n # _atom_sites.entry_id 1PO8 _atom_sites.fract_transf_matrix[1][1] 0.018591 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 121 68 NA NA . C 3 SHV A 1 122 69 SHV SHV . D 4 HOH A 1 123 1 HOH HOH . D 4 HOH A 2 124 2 HOH HOH . D 4 HOH A 3 125 3 HOH HOH . D 4 HOH A 4 126 4 HOH HOH . D 4 HOH A 5 127 5 HOH HOH . D 4 HOH A 6 128 6 HOH HOH . D 4 HOH A 7 129 7 HOH HOH . D 4 HOH A 8 130 8 HOH HOH . D 4 HOH A 9 131 9 HOH HOH . D 4 HOH A 10 132 10 HOH HOH . D 4 HOH A 11 133 11 HOH HOH . D 4 HOH A 12 134 13 HOH HOH . D 4 HOH A 13 135 14 HOH HOH . D 4 HOH A 14 136 15 HOH HOH . D 4 HOH A 15 137 17 HOH HOH . D 4 HOH A 16 138 18 HOH HOH . D 4 HOH A 17 139 19 HOH HOH . D 4 HOH A 18 140 20 HOH HOH . D 4 HOH A 19 141 21 HOH HOH . D 4 HOH A 20 142 22 HOH HOH . D 4 HOH A 21 143 23 HOH HOH . D 4 HOH A 22 144 24 HOH HOH . D 4 HOH A 23 145 25 HOH HOH . D 4 HOH A 24 146 27 HOH HOH . D 4 HOH A 25 147 28 HOH HOH . D 4 HOH A 26 148 29 HOH HOH . D 4 HOH A 27 149 30 HOH HOH . D 4 HOH A 28 150 31 HOH HOH . D 4 HOH A 29 151 32 HOH HOH . D 4 HOH A 30 152 33 HOH HOH . D 4 HOH A 31 153 34 HOH HOH . D 4 HOH A 32 154 35 HOH HOH . D 4 HOH A 33 155 36 HOH HOH . D 4 HOH A 34 156 37 HOH HOH . D 4 HOH A 35 157 39 HOH HOH . D 4 HOH A 36 158 40 HOH HOH . D 4 HOH A 37 159 41 HOH HOH . D 4 HOH A 38 160 42 HOH HOH . D 4 HOH A 39 161 43 HOH HOH . D 4 HOH A 40 162 44 HOH HOH . D 4 HOH A 41 163 46 HOH HOH . D 4 HOH A 42 164 47 HOH HOH . D 4 HOH A 43 165 48 HOH HOH . D 4 HOH A 44 166 49 HOH HOH . D 4 HOH A 45 167 50 HOH HOH . D 4 HOH A 46 168 51 HOH HOH . D 4 HOH A 47 169 52 HOH HOH . D 4 HOH A 48 170 53 HOH HOH . D 4 HOH A 49 171 55 HOH HOH . D 4 HOH A 50 172 56 HOH HOH . D 4 HOH A 51 173 57 HOH HOH . D 4 HOH A 52 174 58 HOH HOH . D 4 HOH A 53 175 59 HOH HOH . D 4 HOH A 54 176 60 HOH HOH . D 4 HOH A 55 177 61 HOH HOH . D 4 HOH A 56 178 62 HOH HOH . D 4 HOH A 57 179 63 HOH HOH . D 4 HOH A 58 180 64 HOH HOH . D 4 HOH A 59 181 65 HOH HOH . D 4 HOH A 60 182 66 HOH HOH . D 4 HOH A 61 183 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SHV . . . C 3 -0.522 26.584 2.884 1 58.78 ? C1 SHV 122 A 1 HETATM 2 O O1 SHV . . . C 3 -1.584 25.98 3.492 1 60.43 ? O1 SHV 122 A 1 HETATM 3 O O2 SHV . . . C 3 0.229 27.561 3.559 1 60.3 ? O2 SHV 122 A 1 HETATM 4 C C2 SHV . . . C 3 0.108 26.521 1.528 1 56.84 ? C2 SHV 122 A 1 HETATM 5 C C3 SHV . . . C 3 -0.842 27.336 0.677 1 54.72 ? C3 SHV 122 A 1 HETATM 6 C C4 SHV . . . C 3 -0.244 27.444 -0.696 1 52.31 ? C4 SHV 122 A 1 HETATM 7 C C5 SHV . . . C 3 -0.847 28.183 -1.866 1 49.94 ? C5 SHV 122 A 1 HETATM 8 C C6 SHV . . . C 3 -1.741 28.361 -3.074 1 49.27 ? C6 SHV 122 A 1 HETATM 9 C C7 SHV . . . C 3 -2.906 29.235 -2.662 1 46.72 ? C7 SHV 122 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 869 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #