data_1POJ # _model_server_result.job_id Ut0Wsw1dB7EVG0sGylgjPQ _model_server_result.datetime_utc '2024-10-11 22:21:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1poj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 1POJ # _exptl.entry_id 1POJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 281.243 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-{[[(1S)-1-AMINO-2-CARBOXYETHYL](DIHYDROXY)PHOSPHORANYL]METHYL}-4-METHYLPENTANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1POJ _cell.length_a 119.137 _cell.length_b 119.137 _cell.length_c 138.152 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1POJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 A,C,D,E,I 3 1,2,3,4 B,F,G,H,J 3 5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 238.274 119.137 0 3 'crystal symmetry operation' 3_645 -y+3/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 178.7055 -59.5685 0 4 'crystal symmetry operation' 4_565 y+1/2,-x+3/2,z 0 1 0 -1 0 0 0 0 1 59.5685 178.7055 0 5 'crystal symmetry operation' 5_656 -x+3/2,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 178.7055 59.5685 138.152 6 'crystal symmetry operation' 6_556 x+1/2,-y+1/2,-z+1 1 0 0 0 -1 0 0 0 -1 59.5685 59.5685 138.152 7 'crystal symmetry operation' 7_656 y+1,x,-z+1 0 1 0 1 0 0 0 0 -1 119.137 0 138.152 8 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 119.137 119.137 138.152 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O1P AE1 . A AE1 401 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc2 E O2P AE1 . A AE1 401 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc3 C ZN ZN . A ZN 601 1_555 A OQ1 KCX 162 A KCX 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc4 D ZN ZN . A ZN 602 1_555 A ND1 HIS 201 A HIS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc5 H O1P AE1 . B AE1 402 1_555 F ZN ZN . B ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc6 H O2P AE1 . B AE1 402 1_555 G ZN ZN . B ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc7 F ZN ZN . B ZN 603 1_555 B OQ1 KCX 162 B KCX 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc8 G ZN ZN . B ZN 604 1_555 B ND1 HIS 201 B HIS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? covale ? covale1 A C VAL 161 A VAL 161 1_555 A N KCX 162 A KCX 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C KCX 162 A KCX 162 1_555 A N CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc9 C ZN ZN . A ZN 601 1_555 A NE2 HIS 70 A HIS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc10 C ZN ZN . A ZN 601 1_555 A OD1 ASP 285 A ASP 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc11 C ZN ZN . A ZN 601 1_555 A NE2 HIS 68 A HIS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc12 C ZN ZN . A ZN 601 1_555 A OQ2 KCX 162 A KCX 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc13 D ZN ZN . A ZN 602 1_555 A NE2 HIS 230 A HIS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc14 D ZN ZN . A ZN 602 1_555 A OQ2 KCX 162 A KCX 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? covale ? covale3 B C VAL 161 B VAL 161 1_555 B N KCX 162 B KCX 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 B C KCX 162 B KCX 162 1_555 B N CYS 163 B CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc15 F ZN ZN . B ZN 603 1_555 B OD1 ASP 285 B ASP 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc16 F ZN ZN . B ZN 603 1_555 B OQ2 KCX 162 B KCX 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc17 F ZN ZN . B ZN 603 1_555 B NE2 HIS 68 B HIS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc18 F ZN ZN . B ZN 603 1_555 B NE2 HIS 70 B HIS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc19 G ZN ZN . B ZN 604 1_555 B OQ2 KCX 162 B KCX 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc20 G ZN ZN . B ZN 604 1_555 B NE2 HIS 230 B HIS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? # _chem_comp.formula 'C10 H20 N O6 P' _chem_comp.formula_weight 281.243 _chem_comp.id AE1 _chem_comp.mon_nstd_flag . _chem_comp.name '2-{[[(1S)-1-AMINO-2-CARBOXYETHYL](DIHYDROXY)PHOSPHORANYL]METHYL}-4-METHYLPENTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1POJ _atom_sites.fract_transf_matrix[1][1] 0.008394 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008394 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 1 ZN ZN2 . D 2 ZN A 1 602 2 ZN ZN2 . E 3 AE1 A 1 401 1 AE1 AEP . F 2 ZN B 1 603 1 ZN ZN2 . G 2 ZN B 1 604 2 ZN ZN2 . H 3 AE1 B 1 402 1 AE1 AEP . I 4 HOH A 1 603 2 HOH TIP . I 4 HOH A 2 604 3 HOH TIP . I 4 HOH A 3 605 4 HOH TIP . I 4 HOH A 4 606 6 HOH TIP . I 4 HOH A 5 607 10 HOH TIP . I 4 HOH A 6 608 11 HOH TIP . I 4 HOH A 7 609 17 HOH TIP . I 4 HOH A 8 610 19 HOH TIP . I 4 HOH A 9 611 22 HOH TIP . I 4 HOH A 10 612 23 HOH TIP . I 4 HOH A 11 613 26 HOH TIP . I 4 HOH A 12 614 28 HOH TIP . I 4 HOH A 13 615 33 HOH TIP . I 4 HOH A 14 616 38 HOH TIP . I 4 HOH A 15 617 40 HOH TIP . I 4 HOH A 16 618 47 HOH TIP . I 4 HOH A 17 619 48 HOH TIP . I 4 HOH A 18 620 52 HOH TIP . I 4 HOH A 19 621 54 HOH TIP . I 4 HOH A 20 622 56 HOH TIP . I 4 HOH A 21 623 58 HOH TIP . I 4 HOH A 22 624 63 HOH TIP . I 4 HOH A 23 625 65 HOH TIP . I 4 HOH A 24 626 68 HOH TIP . J 4 HOH B 1 605 15 HOH TIP . J 4 HOH B 2 606 20 HOH TIP . J 4 HOH B 3 607 24 HOH TIP . J 4 HOH B 4 608 29 HOH TIP . J 4 HOH B 5 609 30 HOH TIP . J 4 HOH B 6 610 35 HOH TIP . J 4 HOH B 7 611 37 HOH TIP . J 4 HOH B 8 612 44 HOH TIP . J 4 HOH B 9 613 45 HOH TIP . J 4 HOH B 10 614 46 HOH TIP . J 4 HOH B 11 615 49 HOH TIP . J 4 HOH B 12 616 50 HOH TIP . J 4 HOH B 13 617 51 HOH TIP . J 4 HOH B 14 618 59 HOH TIP . J 4 HOH B 15 619 61 HOH TIP . J 4 HOH B 16 620 62 HOH TIP . J 4 HOH B 17 621 64 HOH TIP . J 4 HOH B 18 622 66 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 AE1 . . . H 3 34.912 -8.798 50.439 1 36.47 ? O1 AE1 402 B 1 HETATM 2 C C3 AE1 . . . H 3 33.598 -8.732 50.643 1 36.09 ? C3 AE1 402 B 1 HETATM 3 O O2 AE1 . . . H 3 32.788 -9.289 49.933 1 35.25 ? O2 AE1 402 B 1 HETATM 4 C C2 AE1 . . . H 3 33.157 -7.932 51.827 1 36.01 ? C2 AE1 402 B 1 HETATM 5 C C1 AE1 . . . H 3 32.858 -8.81 53.079 1 37.65 ? C1 AE1 402 B 1 HETATM 6 N N AE1 . . . H 3 31.732 -9.716 52.791 1 36.36 ? N AE1 402 B 1 HETATM 7 P P AE1 . . . H 3 32.281 -7.804 54.529 1 40.09 ? P AE1 402 B 1 HETATM 8 O O1P AE1 . . . H 3 31.632 -6.616 53.939 1 38.61 ? O1P AE1 402 B 1 HETATM 9 O O2P AE1 . . . H 3 33.51 -7.302 55.396 1 38.31 ? O2P AE1 402 B 1 HETATM 10 C C8 AE1 . . . H 3 30.978 -8.593 55.575 1 42.37 ? C8 AE1 402 B 1 HETATM 11 C C6 AE1 . . . H 3 31.34 -9.195 56.971 1 45.23 ? C6 AE1 402 B 1 HETATM 12 C C7 AE1 . . . H 3 32.692 -9.885 56.93 1 46.18 ? C7 AE1 402 B 1 HETATM 13 O O4 AE1 . . . H 3 33.383 -9.858 58.097 1 46.63 ? O4 AE1 402 B 1 HETATM 14 O O3 AE1 . . . H 3 33.127 -10.429 55.901 1 45.04 ? O3 AE1 402 B 1 HETATM 15 C C5 AE1 . . . H 3 30.28 -10.263 57.424 1 48.72 ? C5 AE1 402 B 1 HETATM 16 C C16 AE1 . . . H 3 30.1 -10.539 58.973 1 50.3 ? C16 AE1 402 B 1 HETATM 17 C C17 AE1 . . . H 3 29.011 -11.666 59.139 1 52.28 ? C17 AE1 402 B 1 HETATM 18 C C18 AE1 . . . H 3 29.613 -9.302 59.785 1 51.37 ? C18 AE1 402 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 18 #