data_1POW # _model_server_result.job_id vdp8zTdrVeuIs4_mU-jKlg _model_server_result.datetime_utc '2024-11-23 07:38:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pow # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":611}' # _entry.id 1POW # _exptl.entry_id 1POW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.314 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'THIAMINE DIPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1POW _cell.length_a 121.6 _cell.length_b 155.4 _cell.length_c 167.1 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1POW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 155.4 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 439 A ASP 447 1_555 C MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc2 A OD1 ASN 466 A ASN 474 1_555 C MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc3 A O GLN 468 A GLN 476 1_555 C MG MG . A MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc4 C MG MG . A MG 610 1_555 D O1A TPP . A TPP 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc5 C MG MG . A MG 610 1_555 D O3A TPP . A TPP 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc6 C MG MG . A MG 610 1_555 D O3B TPP . A TPP 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? metalc ? metalc7 B OD1 ASP 439 B ASP 447 1_555 F MG MG . B MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc8 B OD1 ASN 466 B ASN 474 1_555 F MG MG . B MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc9 B O GLN 468 B GLN 476 1_555 F MG MG . B MG 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc10 F MG MG . B MG 610 1_555 G O3B TPP . B TPP 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc11 F MG MG . B MG 610 1_555 G O3A TPP . B TPP 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc12 F MG MG . B MG 610 1_555 G O1A TPP . B TPP 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? # _chem_comp.formula 'C12 H19 N4 O7 P2 S 1' _chem_comp.formula_weight 425.314 _chem_comp.id TPP _chem_comp.mon_nstd_flag . _chem_comp.name 'THIAMINE DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1' C2' TPP doub 397 n y N1' C6' TPP sing 398 n y C2' CM2 TPP sing 399 n n C2' N3' TPP sing 400 n y CM2 HM21 TPP sing 401 n n CM2 HM22 TPP sing 402 n n CM2 HM23 TPP sing 403 n n N3' C4' TPP doub 404 n y C4' N4' TPP sing 405 n n C4' C5' TPP sing 406 n y N4' HN41 TPP sing 407 n n N4' HN42 TPP sing 408 n n C5' C6' TPP doub 409 n y C5' C7' TPP sing 410 n n C6' H6' TPP sing 411 n n C7' N3 TPP sing 412 n n C7' "H7'1" TPP sing 413 n n C7' "H7'2" TPP sing 414 n n N3 C2 TPP doub 415 n y N3 C4 TPP sing 416 n y C2 S1 TPP sing 417 n y C2 H2 TPP sing 418 n n S1 C5 TPP sing 419 n y C5 C4 TPP doub 420 n y C5 C6 TPP sing 421 n n C4 CM4 TPP sing 422 n n CM4 HM41 TPP sing 423 n n CM4 HM42 TPP sing 424 n n CM4 HM43 TPP sing 425 n n C6 C7 TPP sing 426 n n C6 H61 TPP sing 427 n n C6 H62 TPP sing 428 n n C7 O7 TPP sing 429 n n C7 H71 TPP sing 430 n n C7 H72 TPP sing 431 n n O7 PA TPP sing 432 n n PA O1A TPP doub 433 n n PA O2A TPP sing 434 n n PA O3A TPP sing 435 n n O2A HOA2 TPP sing 436 n n O3A PB TPP sing 437 n n PB O1B TPP doub 438 n n PB O2B TPP sing 439 n n PB O3B TPP sing 440 n n O2B HOB2 TPP sing 441 n n O3B HOB3 TPP sing 442 n n # _atom_sites.entry_id 1POW _atom_sites.fract_transf_matrix[1][1] 0.008224 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006435 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 610 610 MG MG . D 3 TPP A 1 611 611 TPP TPP . E 4 FAD A 1 612 612 FAD FAD . F 2 MG B 1 610 610 MG MG . G 3 TPP B 1 611 611 TPP TPP . H 4 FAD B 1 612 612 FAD FAD . I 5 HOH A 1 613 3 HOH HOH . I 5 HOH A 2 614 5 HOH HOH . I 5 HOH A 3 615 9 HOH HOH . I 5 HOH A 4 616 11 HOH HOH . I 5 HOH A 5 617 14 HOH HOH . I 5 HOH A 6 618 15 HOH HOH . I 5 HOH A 7 619 16 HOH HOH . I 5 HOH A 8 620 17 HOH HOH . I 5 HOH A 9 621 20 HOH HOH . I 5 HOH A 10 622 21 HOH HOH . I 5 HOH A 11 623 22 HOH HOH . I 5 HOH A 12 624 23 HOH HOH . I 5 HOH A 13 625 24 HOH HOH . I 5 HOH A 14 626 27 HOH HOH . I 5 HOH A 15 627 29 HOH HOH . I 5 HOH A 16 628 30 HOH HOH . I 5 HOH A 17 629 33 HOH HOH . I 5 HOH A 18 630 35 HOH HOH . I 5 HOH A 19 631 38 HOH HOH . I 5 HOH A 20 632 40 HOH HOH . I 5 HOH A 21 633 43 HOH HOH . I 5 HOH A 22 634 44 HOH HOH . I 5 HOH A 23 635 45 HOH HOH . I 5 HOH A 24 636 49 HOH HOH . I 5 HOH A 25 637 50 HOH HOH . I 5 HOH A 26 638 52 HOH HOH . I 5 HOH A 27 639 55 HOH HOH . I 5 HOH A 28 640 56 HOH HOH . I 5 HOH A 29 641 57 HOH HOH . I 5 HOH A 30 642 58 HOH HOH . I 5 HOH A 31 643 59 HOH HOH . I 5 HOH A 32 644 60 HOH HOH . I 5 HOH A 33 645 64 HOH HOH . I 5 HOH A 34 646 68 HOH HOH . I 5 HOH A 35 647 71 HOH HOH . I 5 HOH A 36 648 73 HOH HOH . I 5 HOH A 37 649 74 HOH HOH . I 5 HOH A 38 650 75 HOH HOH . I 5 HOH A 39 651 80 HOH HOH . I 5 HOH A 40 652 81 HOH HOH . I 5 HOH A 41 653 82 HOH HOH . I 5 HOH A 42 654 86 HOH HOH . I 5 HOH A 43 655 91 HOH HOH . I 5 HOH A 44 656 92 HOH HOH . I 5 HOH A 45 657 93 HOH HOH . I 5 HOH A 46 658 96 HOH HOH . I 5 HOH A 47 659 97 HOH HOH . I 5 HOH A 48 660 99 HOH HOH . I 5 HOH A 49 661 101 HOH HOH . I 5 HOH A 50 662 102 HOH HOH . I 5 HOH A 51 663 103 HOH HOH . I 5 HOH A 52 664 105 HOH HOH . I 5 HOH A 53 665 107 HOH HOH . I 5 HOH A 54 666 108 HOH HOH . I 5 HOH A 55 667 110 HOH HOH . I 5 HOH A 56 668 113 HOH HOH . I 5 HOH A 57 669 117 HOH HOH . I 5 HOH A 58 670 118 HOH HOH . I 5 HOH A 59 671 119 HOH HOH . I 5 HOH A 60 672 120 HOH HOH . J 5 HOH B 1 613 1 HOH HOH . J 5 HOH B 2 614 2 HOH HOH . J 5 HOH B 3 615 4 HOH HOH . J 5 HOH B 4 616 6 HOH HOH . J 5 HOH B 5 617 7 HOH HOH . J 5 HOH B 6 618 8 HOH HOH . J 5 HOH B 7 619 10 HOH HOH . J 5 HOH B 8 620 12 HOH HOH . J 5 HOH B 9 621 13 HOH HOH . J 5 HOH B 10 622 18 HOH HOH . J 5 HOH B 11 623 19 HOH HOH . J 5 HOH B 12 624 25 HOH HOH . J 5 HOH B 13 625 26 HOH HOH . J 5 HOH B 14 626 28 HOH HOH . J 5 HOH B 15 627 31 HOH HOH . J 5 HOH B 16 628 32 HOH HOH . J 5 HOH B 17 629 34 HOH HOH . J 5 HOH B 18 630 36 HOH HOH . J 5 HOH B 19 631 37 HOH HOH . J 5 HOH B 20 632 39 HOH HOH . J 5 HOH B 21 633 41 HOH HOH . J 5 HOH B 22 634 42 HOH HOH . J 5 HOH B 23 635 46 HOH HOH . J 5 HOH B 24 636 47 HOH HOH . J 5 HOH B 25 637 48 HOH HOH . J 5 HOH B 26 638 51 HOH HOH . J 5 HOH B 27 639 53 HOH HOH . J 5 HOH B 28 640 54 HOH HOH . J 5 HOH B 29 641 61 HOH HOH . J 5 HOH B 30 642 62 HOH HOH . J 5 HOH B 31 643 63 HOH HOH . J 5 HOH B 32 644 65 HOH HOH . J 5 HOH B 33 645 66 HOH HOH . J 5 HOH B 34 646 67 HOH HOH . J 5 HOH B 35 647 69 HOH HOH . J 5 HOH B 36 648 70 HOH HOH . J 5 HOH B 37 649 72 HOH HOH . J 5 HOH B 38 650 76 HOH HOH . J 5 HOH B 39 651 77 HOH HOH . J 5 HOH B 40 652 78 HOH HOH . J 5 HOH B 41 653 79 HOH HOH . J 5 HOH B 42 654 83 HOH HOH . J 5 HOH B 43 655 84 HOH HOH . J 5 HOH B 44 656 85 HOH HOH . J 5 HOH B 45 657 87 HOH HOH . J 5 HOH B 46 658 88 HOH HOH . J 5 HOH B 47 659 89 HOH HOH . J 5 HOH B 48 660 90 HOH HOH . J 5 HOH B 49 661 94 HOH HOH . J 5 HOH B 50 662 95 HOH HOH . J 5 HOH B 51 663 98 HOH HOH . J 5 HOH B 52 664 100 HOH HOH . J 5 HOH B 53 665 104 HOH HOH . J 5 HOH B 54 666 106 HOH HOH . J 5 HOH B 55 667 109 HOH HOH . J 5 HOH B 56 668 111 HOH HOH . J 5 HOH B 57 669 112 HOH HOH . J 5 HOH B 58 670 114 HOH HOH . J 5 HOH B 59 671 115 HOH HOH . J 5 HOH B 60 672 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1' TPP . . . D 3 16.778 67.552 -1.564 1 9.27 ? N1' TPP 611 A 1 HETATM 2 C C2' TPP . . . D 3 16.551 67.843 -0.294 1 8.99 ? C2' TPP 611 A 1 HETATM 3 C CM2 TPP . . . D 3 16.57 69.298 0.16 1 6.24 ? CM2 TPP 611 A 1 HETATM 4 N N3' TPP . . . D 3 16.3 66.881 0.584 1 12.8 ? N3' TPP 611 A 1 HETATM 5 C C4' TPP . . . D 3 16.225 65.586 0.203 1 12.3 ? C4' TPP 611 A 1 HETATM 6 N N4' TPP . . . D 3 15.73 64.7 1.08 1 8.89 ? N4' TPP 611 A 1 HETATM 7 C C5' TPP . . . D 3 16.56 65.235 -1.122 1 9.06 ? C5' TPP 611 A 1 HETATM 8 C C6' TPP . . . D 3 16.75 66.284 -2.02 1 8.52 ? C6' TPP 611 A 1 HETATM 9 C C7' TPP . . . D 3 16.73 63.783 -1.629 1 5.68 ? C7' TPP 611 A 1 HETATM 10 N N3 TPP . . . D 3 17.905 63.077 -1.079 1 6.21 ? N3 TPP 611 A 1 HETATM 11 C C2 TPP . . . D 3 17.771 62.331 -0.012 1 3.89 ? C2 TPP 611 A 1 HETATM 12 S S1 TPP . . . D 3 19.293 61.589 0.506 1 10.84 ? S1 TPP 611 A 1 HETATM 13 C C5 TPP . . . D 3 20.023 62.382 -0.892 1 4.3 ? C5 TPP 611 A 1 HETATM 14 C C4 TPP . . . D 3 19.136 63.126 -1.567 1 4.8 ? C4 TPP 611 A 1 HETATM 15 C CM4 TPP . . . D 3 19.482 63.946 -2.778 1 3.78 ? CM4 TPP 611 A 1 HETATM 16 C C6 TPP . . . D 3 21.476 62.195 -1.224 1 5.08 ? C6 TPP 611 A 1 HETATM 17 C C7 TPP . . . D 3 22.342 62.426 0.023 1 2.72 ? C7 TPP 611 A 1 HETATM 18 O O7 TPP . . . D 3 23.671 63.001 -0.418 1 2 ? O7 TPP 611 A 1 HETATM 19 P PA TPP . . . D 3 24.815 63.266 0.531 1 4.14 ? PA TPP 611 A 1 HETATM 20 O O1A TPP . . . D 3 26.015 63.494 -0.263 1 3.1 ? O1A TPP 611 A 1 HETATM 21 O O2A TPP . . . D 3 24.417 64.299 1.462 1 4.93 ? O2A TPP 611 A 1 HETATM 22 O O3A TPP . . . D 3 25.031 61.856 1.301 1 2.38 ? O3A TPP 611 A 1 HETATM 23 P PB TPP . . . D 3 25.59 60.398 0.93 1 9.21 ? PB TPP 611 A 1 HETATM 24 O O1B TPP . . . D 3 24.438 59.551 0.716 1 9.38 ? O1B TPP 611 A 1 HETATM 25 O O2B TPP . . . D 3 26.366 60.028 2.088 1 7.52 ? O2B TPP 611 A 1 HETATM 26 O O3B TPP . . . D 3 26.42 60.592 -0.251 1 9.68 ? O3B TPP 611 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 116 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 26 #