data_1PPL # _model_server_result.job_id rt2c534bTVqG1c59omxmRw _model_server_result.datetime_utc '2024-10-21 23:30:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ppl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":330}' # _entry.id 1PPL # _exptl.entry_id 1PPL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.13 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-xylopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.2 _cell.angle_gamma 90 _cell.entry_id 1PPL _cell.length_a 97.5 _cell.length_b 46.46 _cell.length_c 65.93 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 249 E CYS 249 1_555 A SG CYS 283 E CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? covale ? covale1 A OG SER 3 E SER 3 1_555 C C1 MAN . E MAN 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A OG1 THR 7 E THR 7 1_555 D C1 XYS . E XYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? # _chem_comp.formula 'C5 H10 O5' _chem_comp.formula_weight 150.13 _chem_comp.id XYS _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-xylopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version XYS DXylpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 XYS a-D-xylopyranose 'COMMON NAME' GMML 1 XYS a-D-Xylp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 XYS Xyl 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1PPL _atom_sites.fract_transf_matrix[1][1] 0.010256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004826 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1Z7 E 1 324 324 1Z7 IVA . C 3 MAN E 1 329 329 MAN MAN . D 4 XYS E 1 330 330 XYS XYS . E 5 SO4 E 1 331 36 SO4 SO4 . F 6 HOH E 1 332 1 HOH HOH . F 6 HOH E 2 333 2 HOH HOH . F 6 HOH E 3 334 3 HOH HOH . F 6 HOH E 4 335 4 HOH HOH . F 6 HOH E 5 336 5 HOH HOH . F 6 HOH E 6 337 6 HOH HOH . F 6 HOH E 7 338 7 HOH HOH . F 6 HOH E 8 339 8 HOH HOH . F 6 HOH E 9 340 9 HOH HOH . F 6 HOH E 10 341 10 HOH HOH . F 6 HOH E 11 342 11 HOH HOH . F 6 HOH E 12 343 12 HOH HOH . F 6 HOH E 13 344 13 HOH HOH . F 6 HOH E 14 345 14 HOH HOH . F 6 HOH E 15 346 15 HOH HOH . F 6 HOH E 16 347 16 HOH HOH . F 6 HOH E 17 348 17 HOH HOH . F 6 HOH E 18 349 18 HOH HOH . F 6 HOH E 19 350 19 HOH HOH . F 6 HOH E 20 351 20 HOH HOH . F 6 HOH E 21 352 21 HOH HOH . F 6 HOH E 22 353 22 HOH HOH . F 6 HOH E 23 354 23 HOH HOH . F 6 HOH E 24 355 24 HOH HOH . F 6 HOH E 25 356 25 HOH HOH . F 6 HOH E 26 357 26 HOH HOH . F 6 HOH E 27 358 27 HOH HOH . F 6 HOH E 28 359 28 HOH HOH . F 6 HOH E 29 360 29 HOH HOH . F 6 HOH E 30 361 30 HOH HOH . F 6 HOH E 31 362 31 HOH HOH . F 6 HOH E 32 363 32 HOH HOH . F 6 HOH E 33 364 33 HOH HOH . F 6 HOH E 34 365 34 HOH HOH . F 6 HOH E 35 366 35 HOH HOH . F 6 HOH E 36 367 37 HOH HOH . F 6 HOH E 37 368 38 HOH HOH . F 6 HOH E 38 369 40 HOH HOH . F 6 HOH E 39 370 41 HOH HOH . F 6 HOH E 40 371 42 HOH HOH . F 6 HOH E 41 372 44 HOH HOH . F 6 HOH E 42 373 45 HOH HOH . F 6 HOH E 43 374 46 HOH HOH . F 6 HOH E 44 375 47 HOH HOH . F 6 HOH E 45 376 48 HOH HOH . F 6 HOH E 46 377 49 HOH HOH . F 6 HOH E 47 378 50 HOH HOH . F 6 HOH E 48 379 51 HOH HOH . F 6 HOH E 49 380 53 HOH HOH . F 6 HOH E 50 381 54 HOH HOH . F 6 HOH E 51 382 55 HOH HOH . F 6 HOH E 52 383 56 HOH HOH . F 6 HOH E 53 384 57 HOH HOH . F 6 HOH E 54 385 58 HOH HOH . F 6 HOH E 55 386 59 HOH HOH . F 6 HOH E 56 387 62 HOH HOH . F 6 HOH E 57 388 63 HOH HOH . F 6 HOH E 58 389 64 HOH HOH . F 6 HOH E 59 390 65 HOH HOH . F 6 HOH E 60 391 66 HOH HOH . F 6 HOH E 61 392 67 HOH HOH . F 6 HOH E 62 393 68 HOH HOH . F 6 HOH E 63 394 69 HOH HOH . F 6 HOH E 64 395 71 HOH HOH . F 6 HOH E 65 396 72 HOH HOH . F 6 HOH E 66 397 73 HOH HOH . F 6 HOH E 67 398 74 HOH HOH . F 6 HOH E 68 399 75 HOH HOH . F 6 HOH E 69 400 76 HOH HOH . F 6 HOH E 70 401 77 HOH HOH . F 6 HOH E 71 402 78 HOH HOH . F 6 HOH E 72 403 79 HOH HOH . F 6 HOH E 73 404 80 HOH HOH . F 6 HOH E 74 405 82 HOH HOH . F 6 HOH E 75 406 83 HOH HOH . F 6 HOH E 76 407 85 HOH HOH . F 6 HOH E 77 408 86 HOH HOH . F 6 HOH E 78 409 87 HOH HOH . F 6 HOH E 79 410 88 HOH HOH . F 6 HOH E 80 411 89 HOH HOH . F 6 HOH E 81 412 90 HOH HOH . F 6 HOH E 82 413 92 HOH HOH . F 6 HOH E 83 414 93 HOH HOH . F 6 HOH E 84 415 94 HOH HOH . F 6 HOH E 85 416 95 HOH HOH . F 6 HOH E 86 417 96 HOH HOH . F 6 HOH E 87 418 97 HOH HOH . F 6 HOH E 88 419 98 HOH HOH . F 6 HOH E 89 420 99 HOH HOH . F 6 HOH E 90 421 100 HOH HOH . F 6 HOH E 91 422 101 HOH HOH . F 6 HOH E 92 423 102 HOH HOH . F 6 HOH E 93 424 103 HOH HOH . F 6 HOH E 94 425 104 HOH HOH . F 6 HOH E 95 426 105 HOH HOH . F 6 HOH E 96 427 106 HOH HOH . F 6 HOH E 97 428 107 HOH HOH . F 6 HOH E 98 429 109 HOH HOH . F 6 HOH E 99 430 110 HOH HOH . F 6 HOH E 100 431 112 HOH HOH . F 6 HOH E 101 432 113 HOH HOH . F 6 HOH E 102 433 114 HOH HOH . F 6 HOH E 103 434 115 HOH HOH . F 6 HOH E 104 435 116 HOH HOH . F 6 HOH E 105 436 118 HOH HOH . F 6 HOH E 106 437 119 HOH HOH . F 6 HOH E 107 438 120 HOH HOH . F 6 HOH E 108 439 121 HOH HOH . F 6 HOH E 109 440 122 HOH HOH . F 6 HOH E 110 441 124 HOH HOH . F 6 HOH E 111 442 125 HOH HOH . F 6 HOH E 112 443 126 HOH HOH . F 6 HOH E 113 444 127 HOH HOH . F 6 HOH E 114 445 128 HOH HOH . F 6 HOH E 115 446 131 HOH HOH . F 6 HOH E 116 447 132 HOH HOH . F 6 HOH E 117 448 134 HOH HOH . F 6 HOH E 118 449 137 HOH HOH . F 6 HOH E 119 450 139 HOH HOH . F 6 HOH E 120 451 140 HOH HOH . F 6 HOH E 121 452 141 HOH HOH . F 6 HOH E 122 453 142 HOH HOH . F 6 HOH E 123 454 143 HOH HOH . F 6 HOH E 124 455 144 HOH HOH . F 6 HOH E 125 456 146 HOH HOH . F 6 HOH E 126 457 147 HOH HOH . F 6 HOH E 127 458 148 HOH HOH . F 6 HOH E 128 459 150 HOH HOH . F 6 HOH E 129 460 151 HOH HOH . F 6 HOH E 130 461 152 HOH HOH . F 6 HOH E 131 462 153 HOH HOH . F 6 HOH E 132 463 154 HOH HOH . F 6 HOH E 133 464 156 HOH HOH . F 6 HOH E 134 465 161 HOH HOH . F 6 HOH E 135 466 162 HOH HOH . F 6 HOH E 136 467 164 HOH HOH . F 6 HOH E 137 468 165 HOH HOH . F 6 HOH E 138 469 168 HOH HOH . F 6 HOH E 139 470 169 HOH HOH . F 6 HOH E 140 471 173 HOH HOH . F 6 HOH E 141 472 174 HOH HOH . F 6 HOH E 142 473 176 HOH HOH . F 6 HOH E 143 474 177 HOH HOH . F 6 HOH E 144 475 178 HOH HOH . F 6 HOH E 145 476 179 HOH HOH . F 6 HOH E 146 477 182 HOH HOH . F 6 HOH E 147 478 185 HOH HOH . F 6 HOH E 148 479 186 HOH HOH . F 6 HOH E 149 480 187 HOH HOH . F 6 HOH E 150 481 188 HOH HOH . F 6 HOH E 151 482 191 HOH HOH . F 6 HOH E 152 483 192 HOH HOH . F 6 HOH E 153 484 193 HOH HOH . F 6 HOH E 154 485 197 HOH HOH . F 6 HOH E 155 486 198 HOH HOH . F 6 HOH E 156 487 199 HOH HOH . F 6 HOH E 157 488 201 HOH HOH . F 6 HOH E 158 489 202 HOH HOH . F 6 HOH E 159 490 204 HOH HOH . F 6 HOH E 160 491 205 HOH HOH . F 6 HOH E 161 492 206 HOH HOH . F 6 HOH E 162 493 207 HOH HOH . F 6 HOH E 163 494 208 HOH HOH . F 6 HOH E 164 495 209 HOH HOH . F 6 HOH E 165 496 210 HOH HOH . F 6 HOH E 166 497 211 HOH HOH . F 6 HOH E 167 498 212 HOH HOH . F 6 HOH E 168 499 213 HOH HOH . F 6 HOH E 169 500 214 HOH HOH . F 6 HOH E 170 501 215 HOH HOH . F 6 HOH E 171 502 216 HOH HOH . F 6 HOH E 172 503 217 HOH HOH . F 6 HOH E 173 504 218 HOH HOH . F 6 HOH E 174 505 219 HOH HOH . F 6 HOH E 175 506 220 HOH HOH . F 6 HOH E 176 507 221 HOH HOH . F 6 HOH E 177 508 222 HOH HOH . F 6 HOH E 178 509 223 HOH HOH . F 6 HOH E 179 510 224 HOH HOH . F 6 HOH E 180 511 225 HOH HOH . F 6 HOH E 181 512 226 HOH HOH . F 6 HOH E 182 513 227 HOH HOH . F 6 HOH E 183 514 228 HOH HOH . F 6 HOH E 184 515 229 HOH HOH . F 6 HOH E 185 516 230 HOH HOH . F 6 HOH E 186 517 231 HOH HOH . F 6 HOH E 187 518 232 HOH HOH . F 6 HOH E 188 519 233 HOH HOH . F 6 HOH E 189 520 234 HOH HOH . F 6 HOH E 190 521 235 HOH HOH . F 6 HOH E 191 522 236 HOH HOH . F 6 HOH E 192 523 237 HOH HOH . F 6 HOH E 193 524 238 HOH HOH . F 6 HOH E 194 525 239 HOH HOH . F 6 HOH E 195 526 240 HOH HOH . F 6 HOH E 196 527 241 HOH HOH . F 6 HOH E 197 528 242 HOH HOH . F 6 HOH E 198 529 243 HOH HOH . F 6 HOH E 199 530 244 HOH HOH . F 6 HOH E 200 531 245 HOH HOH . F 6 HOH E 201 532 246 HOH HOH . F 6 HOH E 202 533 247 HOH HOH . F 6 HOH E 203 534 248 HOH HOH . F 6 HOH E 204 535 249 HOH HOH . F 6 HOH E 205 536 250 HOH HOH . F 6 HOH E 206 537 251 HOH HOH . F 6 HOH E 207 538 252 HOH HOH . F 6 HOH E 208 539 253 HOH HOH . F 6 HOH E 209 540 254 HOH HOH . F 6 HOH E 210 541 255 HOH HOH . F 6 HOH E 211 542 256 HOH HOH . F 6 HOH E 212 543 257 HOH HOH . F 6 HOH E 213 544 258 HOH HOH . F 6 HOH E 214 545 259 HOH HOH . F 6 HOH E 215 546 260 HOH HOH . F 6 HOH E 216 547 261 HOH HOH . F 6 HOH E 217 548 262 HOH HOH . F 6 HOH E 218 549 263 HOH HOH . F 6 HOH E 219 550 264 HOH HOH . F 6 HOH E 220 551 265 HOH HOH . F 6 HOH E 221 552 266 HOH HOH . F 6 HOH E 222 553 267 HOH HOH . F 6 HOH E 223 554 268 HOH HOH . F 6 HOH E 224 555 269 HOH HOH . F 6 HOH E 225 556 270 HOH HOH . F 6 HOH E 226 557 271 HOH HOH . F 6 HOH E 227 558 272 HOH HOH . F 6 HOH E 228 559 273 HOH HOH . F 6 HOH E 229 560 274 HOH HOH . F 6 HOH E 230 561 275 HOH HOH . F 6 HOH E 231 562 276 HOH HOH . F 6 HOH E 232 563 277 HOH HOH . F 6 HOH E 233 564 278 HOH HOH . F 6 HOH E 234 565 279 HOH HOH . F 6 HOH E 235 566 280 HOH HOH . F 6 HOH E 236 567 281 HOH HOH . F 6 HOH E 237 568 282 HOH HOH . F 6 HOH E 238 569 283 HOH HOH . F 6 HOH E 239 570 284 HOH HOH . F 6 HOH E 240 571 285 HOH HOH . F 6 HOH E 241 572 286 HOH HOH . F 6 HOH E 242 573 287 HOH HOH . F 6 HOH E 243 574 288 HOH HOH . F 6 HOH E 244 575 289 HOH HOH . F 6 HOH E 245 576 290 HOH HOH . F 6 HOH E 246 577 291 HOH HOH . F 6 HOH E 247 578 292 HOH HOH . F 6 HOH E 248 579 293 HOH HOH . F 6 HOH E 249 580 294 HOH HOH . F 6 HOH E 250 581 295 HOH HOH . F 6 HOH E 251 582 296 HOH HOH . F 6 HOH E 252 583 297 HOH HOH . F 6 HOH E 253 584 298 HOH HOH . F 6 HOH E 254 585 299 HOH HOH . F 6 HOH E 255 586 300 HOH HOH . F 6 HOH E 256 587 301 HOH HOH . F 6 HOH E 257 588 302 HOH HOH . F 6 HOH E 258 589 303 HOH HOH . F 6 HOH E 259 590 304 HOH HOH . F 6 HOH E 260 591 305 HOH HOH . F 6 HOH E 261 592 306 HOH HOH . F 6 HOH E 262 593 307 HOH HOH . F 6 HOH E 263 594 308 HOH HOH . F 6 HOH E 264 595 309 HOH HOH . F 6 HOH E 265 596 310 HOH HOH . F 6 HOH E 266 597 311 HOH HOH . F 6 HOH E 267 598 312 HOH HOH . F 6 HOH E 268 599 313 HOH HOH . F 6 HOH E 269 600 314 HOH HOH . F 6 HOH E 270 601 315 HOH HOH . F 6 HOH E 271 602 316 HOH HOH . F 6 HOH E 272 603 317 HOH HOH . F 6 HOH E 273 604 318 HOH HOH . F 6 HOH E 274 605 319 HOH HOH . F 6 HOH E 275 606 52 HOH HOH . F 6 HOH E 276 607 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XYS . . . D 4 25.132 15.238 -1.951 1 27.62 ? C1 XYS 330 E 1 HETATM 2 C C2 XYS . . . D 4 24.16 15.507 -3.128 1 30.93 ? C2 XYS 330 E 1 HETATM 3 C C3 XYS . . . D 4 23.734 16.959 -3.005 1 33.36 ? C3 XYS 330 E 1 HETATM 4 C C4 XYS . . . D 4 24.869 17.885 -3.341 1 33.98 ? C4 XYS 330 E 1 HETATM 5 C C5 XYS . . . D 4 26.155 17.418 -2.741 1 33.53 ? C5 XYS 330 E 1 HETATM 6 O O2 XYS . . . D 4 23.163 14.563 -3.015 1 35.51 ? O2 XYS 330 E 1 HETATM 7 O O3 XYS . . . D 4 22.652 17.346 -3.769 1 37.06 ? O3 XYS 330 E 1 HETATM 8 O O4 XYS . . . D 4 24.353 19.115 -2.784 1 34.25 ? O4 XYS 330 E 1 HETATM 9 O O5 XYS . . . D 4 26.24 16.062 -2.286 1 33.33 ? O5 XYS 330 E 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 9 #