data_1PQ2
#
_model_server_result.job_id            fm5M4SEylYaf2mq2cTeycw 
_model_server_result.datetime_utc      '2024-11-29 05:03:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1pq2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":500}' 
#
_entry.id    1PQ2 
#
_exptl.entry_id    1PQ2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.51 
_cell.angle_gamma         90 
_cell.entry_id            1PQ2 
_cell.length_a            105.988 
_cell.length_b            137.405 
_cell.length_c            97.322 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1PQ2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,H 1 1 
B,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 417 A CYS 435 1_555 D FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc2 B SG CYS 417 B CYS 435 1_555 G FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     1PQ2 
_atom_sites.fract_transf_matrix[1][1]    0.009435 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00391 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007278 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011123 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 504 504 PO4 PO4 . 
D 3 HEM A 1 500 500 HEM HEM . 
E 4 PLM A 1 502 502 PLM PLM . 
F 4 PLM B 1 501 501 PLM PLM . 
G 3 HEM B 1 500 500 HEM HEM . 
H 5 HOH A 1 600 600 HOH HOH . 
H 5 HOH A 2 602 602 HOH HOH . 
H 5 HOH A 3 605 605 HOH HOH . 
H 5 HOH A 4 607 607 HOH HOH . 
H 5 HOH A 5 608 608 HOH HOH . 
H 5 HOH A 6 609 609 HOH HOH . 
H 5 HOH A 7 610 610 HOH HOH . 
H 5 HOH A 8 611 611 HOH HOH . 
H 5 HOH A 9 613 613 HOH HOH . 
H 5 HOH A 10 614 614 HOH HOH . 
H 5 HOH A 11 616 616 HOH HOH . 
H 5 HOH A 12 618 618 HOH HOH . 
H 5 HOH A 13 619 619 HOH HOH . 
H 5 HOH A 14 620 620 HOH HOH . 
H 5 HOH A 15 623 623 HOH HOH . 
H 5 HOH A 16 624 624 HOH HOH . 
H 5 HOH A 17 626 626 HOH HOH . 
H 5 HOH A 18 628 628 HOH HOH . 
H 5 HOH A 19 629 629 HOH HOH . 
H 5 HOH A 20 631 631 HOH HOH . 
H 5 HOH A 21 634 634 HOH HOH . 
H 5 HOH A 22 635 635 HOH HOH . 
I 5 HOH B 1 601 601 HOH HOH . 
I 5 HOH B 2 603 603 HOH HOH . 
I 5 HOH B 3 604 604 HOH HOH . 
I 5 HOH B 4 606 606 HOH HOH . 
I 5 HOH B 5 612 612 HOH HOH . 
I 5 HOH B 6 615 615 HOH HOH . 
I 5 HOH B 7 638 638 HOH HOH . 
I 5 HOH B 8 640 640 HOH HOH . 
I 5 HOH B 9 641 641 HOH HOH . 
I 5 HOH B 10 643 643 HOH HOH . 
I 5 HOH B 11 644 644 HOH HOH . 
I 5 HOH B 12 647 647 HOH HOH . 
I 5 HOH B 13 649 649 HOH HOH . 
I 5 HOH B 14 651 651 HOH HOH . 
I 5 HOH B 15 653 653 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 3 -27.466 -17.217 -13.625 1 41.88 ? CHA HEM 500 A 1 
HETATM 2 C CHB HEM . . . D 3 -24.19 -19.195 -16.422 1 42.2 ? CHB HEM 500 A 1 
HETATM 3 C CHC HEM . . . D 3 -26.978 -18.539 -20.17 1 42.72 ? CHC HEM 500 A 1 
HETATM 4 C CHD HEM . . . D 3 -30.23 -16.597 -17.355 1 41.64 ? CHD HEM 500 A 1 
HETATM 5 C C1A HEM . . . D 3 -26.274 -17.834 -14.012 1 42.78 ? C1A HEM 500 A 1 
HETATM 6 C C2A HEM . . . D 3 -25.207 -18.195 -13.177 1 42.58 ? C2A HEM 500 A 1 
HETATM 7 C C3A HEM . . . D 3 -24.277 -18.765 -14.007 1 41.32 ? C3A HEM 500 A 1 
HETATM 8 C C4A HEM . . . D 3 -24.812 -18.725 -15.291 1 42.55 ? C4A HEM 500 A 1 
HETATM 9 C CMA HEM . . . D 3 -22.887 -19.346 -13.625 1 37.72 ? CMA HEM 500 A 1 
HETATM 10 C CAA HEM . . . D 3 -25.13 -17.977 -11.654 1 44.59 ? CAA HEM 500 A 1 
HETATM 11 C CBA HEM . . . D 3 -25.66 -19.1 -10.807 1 47.74 ? CBA HEM 500 A 1 
HETATM 12 C CGA HEM . . . D 3 -25.414 -18.95 -9.306 1 48.46 ? CGA HEM 500 A 1 
HETATM 13 O O1A HEM . . . D 3 -24.413 -19.48 -8.803 1 48.13 ? O1A HEM 500 A 1 
HETATM 14 O O2A HEM . . . D 3 -26.194 -18.321 -8.591 1 46.91 ? O2A HEM 500 A 1 
HETATM 15 C C1B HEM . . . D 3 -24.598 -19.218 -17.752 1 43.98 ? C1B HEM 500 A 1 
HETATM 16 C C2B HEM . . . D 3 -23.869 -19.729 -18.857 1 42.47 ? C2B HEM 500 A 1 
HETATM 17 C C3B HEM . . . D 3 -24.715 -19.518 -19.971 1 41.46 ? C3B HEM 500 A 1 
HETATM 18 C C4B HEM . . . D 3 -25.873 -18.913 -19.443 1 42.64 ? C4B HEM 500 A 1 
HETATM 19 C CMB HEM . . . D 3 -22.496 -20.347 -18.777 1 40.87 ? CMB HEM 500 A 1 
HETATM 20 C CAB HEM . . . D 3 -24.507 -19.832 -21.334 1 40.73 ? CAB HEM 500 A 1 
HETATM 21 C CBB HEM . . . D 3 -23.483 -20.695 -21.966 1 39.36 ? CBB HEM 500 A 1 
HETATM 22 C C1C HEM . . . D 3 -28.162 -17.949 -19.776 1 45.25 ? C1C HEM 500 A 1 
HETATM 23 C C2C HEM . . . D 3 -29.198 -17.633 -20.62 1 45.52 ? C2C HEM 500 A 1 
HETATM 24 C C3C HEM . . . D 3 -30.194 -17.048 -19.822 1 45.33 ? C3C HEM 500 A 1 
HETATM 25 C C4C HEM . . . D 3 -29.654 -17.063 -18.514 1 42.69 ? C4C HEM 500 A 1 
HETATM 26 C CMC HEM . . . D 3 -29.235 -17.876 -22.149 1 45.06 ? CMC HEM 500 A 1 
HETATM 27 C CAC HEM . . . D 3 -31.425 -16.542 -20.126 1 45.67 ? CAC HEM 500 A 1 
HETATM 28 C CBC HEM . . . D 3 -32.707 -16.912 -19.663 1 46.3 ? CBC HEM 500 A 1 
HETATM 29 C C1D HEM . . . D 3 -29.763 -16.585 -16.095 1 41.4 ? C1D HEM 500 A 1 
HETATM 30 C C2D HEM . . . D 3 -30.463 -16.077 -15.027 1 41.81 ? C2D HEM 500 A 1 
HETATM 31 C C3D HEM . . . D 3 -29.69 -16.234 -13.919 1 42.76 ? C3D HEM 500 A 1 
HETATM 32 C C4D HEM . . . D 3 -28.536 -16.848 -14.397 1 40.7 ? C4D HEM 500 A 1 
HETATM 33 C CMD HEM . . . D 3 -31.858 -15.45 -15.081 1 40.03 ? CMD HEM 500 A 1 
HETATM 34 C CAD HEM . . . D 3 -30.01 -15.823 -12.449 1 44.66 ? CAD HEM 500 A 1 
HETATM 35 C CBD HEM . . . D 3 -30.73 -16.958 -11.646 1 49.56 ? CBD HEM 500 A 1 
HETATM 36 C CGD HEM . . . D 3 -31.104 -16.693 -10.158 1 52.05 ? CGD HEM 500 A 1 
HETATM 37 O O1D HEM . . . D 3 -32.065 -17.229 -9.657 1 53.95 ? O1D HEM 500 A 1 
HETATM 38 O O2D HEM . . . D 3 -30.405 -15.923 -9.475 1 53.35 ? O2D HEM 500 A 1 
HETATM 39 N NA HEM . . . D 3 -25.993 -18.186 -15.304 1 42.83 ? NA HEM 500 A 1 
HETATM 40 N NB HEM . . . D 3 -25.772 -18.744 -18.137 1 43 ? NB HEM 500 A 1 
HETATM 41 N NC HEM . . . D 3 -28.434 -17.614 -18.523 1 44.23 ? NC HEM 500 A 1 
HETATM 42 N ND HEM . . . D 3 -28.626 -17.038 -15.71 1 40.17 ? ND HEM 500 A 1 
HETATM 43 FE FE HEM . . . D 3 -27.196 -17.9 -16.941 1 42.6 ? FE HEM 500 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#