data_1PQ2 # _model_server_result.job_id K-XSQklyQLYqnuXOzdpusQ _model_server_result.datetime_utc '2024-10-17 08:30:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pq2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":500}' # _entry.id 1PQ2 # _exptl.entry_id 1PQ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.51 _cell.angle_gamma 90 _cell.entry_id 1PQ2 _cell.length_a 105.988 _cell.length_b 137.405 _cell.length_c 97.322 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PQ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 435 1_555 D FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc2 B SG CYS 417 B CYS 435 1_555 G FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1PQ2 _atom_sites.fract_transf_matrix[1][1] 0.009435 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00391 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 504 504 PO4 PO4 . D 3 HEM A 1 500 500 HEM HEM . E 4 PLM A 1 502 502 PLM PLM . F 4 PLM B 1 501 501 PLM PLM . G 3 HEM B 1 500 500 HEM HEM . H 5 HOH A 1 600 600 HOH HOH . H 5 HOH A 2 602 602 HOH HOH . H 5 HOH A 3 605 605 HOH HOH . H 5 HOH A 4 607 607 HOH HOH . H 5 HOH A 5 608 608 HOH HOH . H 5 HOH A 6 609 609 HOH HOH . H 5 HOH A 7 610 610 HOH HOH . H 5 HOH A 8 611 611 HOH HOH . H 5 HOH A 9 613 613 HOH HOH . H 5 HOH A 10 614 614 HOH HOH . H 5 HOH A 11 616 616 HOH HOH . H 5 HOH A 12 618 618 HOH HOH . H 5 HOH A 13 619 619 HOH HOH . H 5 HOH A 14 620 620 HOH HOH . H 5 HOH A 15 623 623 HOH HOH . H 5 HOH A 16 624 624 HOH HOH . H 5 HOH A 17 626 626 HOH HOH . H 5 HOH A 18 628 628 HOH HOH . H 5 HOH A 19 629 629 HOH HOH . H 5 HOH A 20 631 631 HOH HOH . H 5 HOH A 21 634 634 HOH HOH . H 5 HOH A 22 635 635 HOH HOH . I 5 HOH B 1 601 601 HOH HOH . I 5 HOH B 2 603 603 HOH HOH . I 5 HOH B 3 604 604 HOH HOH . I 5 HOH B 4 606 606 HOH HOH . I 5 HOH B 5 612 612 HOH HOH . I 5 HOH B 6 615 615 HOH HOH . I 5 HOH B 7 638 638 HOH HOH . I 5 HOH B 8 640 640 HOH HOH . I 5 HOH B 9 641 641 HOH HOH . I 5 HOH B 10 643 643 HOH HOH . I 5 HOH B 11 644 644 HOH HOH . I 5 HOH B 12 647 647 HOH HOH . I 5 HOH B 13 649 649 HOH HOH . I 5 HOH B 14 651 651 HOH HOH . I 5 HOH B 15 653 653 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 3 -2.725 25.28 -30.109 1 44.97 ? CHA HEM 500 B 1 HETATM 2 C CHB HEM . . . G 3 -6.222 27.622 -27.965 1 43.99 ? CHB HEM 500 B 1 HETATM 3 C CHC HEM . . . G 3 -8.826 27.256 -31.881 1 45.15 ? CHC HEM 500 B 1 HETATM 4 C CHD HEM . . . G 3 -5.303 24.942 -34.022 1 42.75 ? CHD HEM 500 B 1 HETATM 5 C C1A HEM . . . G 3 -3.426 25.971 -29.119 1 44.23 ? C1A HEM 500 B 1 HETATM 6 C C2A HEM . . . G 3 -2.973 26.267 -27.825 1 44.05 ? C2A HEM 500 B 1 HETATM 7 C C3A HEM . . . G 3 -3.995 26.946 -27.219 1 43.9 ? C3A HEM 500 B 1 HETATM 8 C C4A HEM . . . G 3 -5.012 27.029 -28.164 1 43.63 ? C4A HEM 500 B 1 HETATM 9 C CMA HEM . . . G 3 -4.038 27.523 -25.751 1 39.59 ? CMA HEM 500 B 1 HETATM 10 C CAA HEM . . . G 3 -1.61 25.889 -27.251 1 44.76 ? CAA HEM 500 B 1 HETATM 11 C CBA HEM . . . G 3 -0.546 26.906 -27.462 1 43.76 ? CBA HEM 500 B 1 HETATM 12 C CGA HEM . . . G 3 0.776 26.513 -26.875 1 45.38 ? CGA HEM 500 B 1 HETATM 13 O O1A HEM . . . G 3 1.407 27.334 -26.212 1 46.58 ? O1A HEM 500 B 1 HETATM 14 O O2A HEM . . . G 3 1.229 25.389 -27.039 1 44.56 ? O2A HEM 500 B 1 HETATM 15 C C1B HEM . . . G 3 -7.309 27.764 -28.802 1 45.22 ? C1B HEM 500 B 1 HETATM 16 C C2B HEM . . . G 3 -8.527 28.4 -28.483 1 44.65 ? C2B HEM 500 B 1 HETATM 17 C C3B HEM . . . G 3 -9.3 28.283 -29.64 1 44.38 ? C3B HEM 500 B 1 HETATM 18 C C4B HEM . . . G 3 -8.476 27.586 -30.577 1 44.99 ? C4B HEM 500 B 1 HETATM 19 C CMB HEM . . . G 3 -8.852 29.047 -27.157 1 45.28 ? CMB HEM 500 B 1 HETATM 20 C CAB HEM . . . G 3 -10.593 28.742 -29.877 1 43.11 ? CAB HEM 500 B 1 HETATM 21 C CBB HEM . . . G 3 -11.841 28.45 -29.17 1 44.06 ? CBB HEM 500 B 1 HETATM 22 C C1C HEM . . . G 3 -8.131 26.598 -32.875 1 45.44 ? C1C HEM 500 B 1 HETATM 23 C C2C HEM . . . G 3 -8.609 26.34 -34.147 1 45.91 ? C2C HEM 500 B 1 HETATM 24 C C3C HEM . . . G 3 -7.59 25.654 -34.817 1 44.99 ? C3C HEM 500 B 1 HETATM 25 C C4C HEM . . . G 3 -6.541 25.548 -33.871 1 43.76 ? C4C HEM 500 B 1 HETATM 26 C CMC HEM . . . G 3 -10.009 26.734 -34.713 1 45.7 ? CMC HEM 500 B 1 HETATM 27 C CAC HEM . . . G 3 -7.519 25.153 -36.087 1 44.35 ? CAC HEM 500 B 1 HETATM 28 C CBC HEM . . . G 3 -6.602 25.432 -37.13 1 39.03 ? CBC HEM 500 B 1 HETATM 29 C C1D HEM . . . G 3 -4.282 24.82 -33.145 1 43.35 ? C1D HEM 500 B 1 HETATM 30 C C2D HEM . . . G 3 -3.077 24.166 -33.416 1 43.11 ? C2D HEM 500 B 1 HETATM 31 C C3D HEM . . . G 3 -2.308 24.244 -32.301 1 43.36 ? C3D HEM 500 B 1 HETATM 32 C C4D HEM . . . G 3 -3.103 24.959 -31.389 1 43.46 ? C4D HEM 500 B 1 HETATM 33 C CMD HEM . . . G 3 -2.675 23.472 -34.723 1 40.66 ? CMD HEM 500 B 1 HETATM 34 C CAD HEM . . . G 3 -0.871 23.661 -32.082 1 42.32 ? CAD HEM 500 B 1 HETATM 35 C CBD HEM . . . G 3 0.285 24.627 -32.451 1 44.28 ? CBD HEM 500 B 1 HETATM 36 C CGD HEM . . . G 3 1.723 24.085 -32.264 1 47.44 ? CGD HEM 500 B 1 HETATM 37 O O1D HEM . . . G 3 2.704 24.698 -32.684 1 45.78 ? O1D HEM 500 B 1 HETATM 38 O O2D HEM . . . G 3 1.869 22.994 -31.688 1 49.61 ? O2D HEM 500 B 1 HETATM 39 N NA HEM . . . G 3 -4.674 26.452 -29.297 1 44.01 ? NA HEM 500 B 1 HETATM 40 N NB HEM . . . G 3 -7.321 27.294 -30.053 1 42.61 ? NB HEM 500 B 1 HETATM 41 N NC HEM . . . G 3 -6.91 26.136 -32.712 1 45.05 ? NC HEM 500 B 1 HETATM 42 N ND HEM . . . G 3 -4.273 25.274 -31.93 1 42.04 ? ND HEM 500 B 1 HETATM 43 FE FE HEM . . . G 3 -5.813 26.3 -31.009 1 41.62 ? FE HEM 500 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 43 #