data_1PQM # _model_server_result.job_id s2xPISgqsZrVABOEGGNw5w _model_server_result.datetime_utc '2024-10-12 22:18:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":966}' # _entry.id 1PQM # _exptl.entry_id 1PQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-HYDROXYETHYL DISULFIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1PQM _cell.length_a 59.748 _cell.length_b 59.748 _cell.length_c 95.36 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 11 A GLU 11 1_555 C K K . A K 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? metalc ? metalc2 A O GLU 11 A GLU 11 1_555 C K K . A K 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc3 A OH TYR 18 A TYR 18 1_555 C K K . A K 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? metalc ? metalc4 G O HOH . A HOH 204 1_555 C K K . A K 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc5 G O HOH . A HOH 207 1_555 C K K . A K 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.647 ? metalc ? metalc6 G O HOH . A HOH 304 1_555 C K K . A K 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc7 G O HOH . A HOH 405 1_555 C K K . A K 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.306 ? metalc ? metalc8 G O HOH . A HOH 523 1_555 C K K . A K 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.509 ? metalc ? metalc9 G O HOH . A HOH 539 1_555 C K K . A K 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.646 ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id HED _chem_comp.mon_nstd_flag . _chem_comp.name '2-HYDROXYETHYL DISULFIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HED sing 129 n n C1 C2 HED sing 130 n n C1 H11 HED sing 131 n n C1 H12 HED sing 132 n n O1 HO1 HED sing 133 n n C2 S3 HED sing 134 n n C2 H21 HED sing 135 n n C2 H22 HED sing 136 n n S3 S4 HED sing 137 n n S4 C5 HED sing 138 n n C5 C6 HED sing 139 n n C5 H51 HED sing 140 n n C5 H52 HED sing 141 n n C6 O6 HED sing 142 n n C6 H61 HED sing 143 n n C6 H62 HED sing 144 n n O6 HO6 HED sing 145 n n # _atom_sites.entry_id 1PQM _atom_sites.fract_transf_matrix[1][1] 0.016737 _atom_sites.fract_transf_matrix[1][2] 0.009663 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019326 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 168 168 PO4 PO4 . C 3 K A 1 972 972 K K . D 4 CL A 1 973 973 CL CL . E 4 CL A 1 978 978 CL CL . F 5 HED A 1 966 966 HED HED . G 6 HOH A 1 171 171 HOH HOH . G 6 HOH A 2 172 172 HOH HOH . G 6 HOH A 3 174 174 HOH HOH . G 6 HOH A 4 175 175 HOH HOH . G 6 HOH A 5 177 177 HOH HOH . G 6 HOH A 6 179 179 HOH HOH . G 6 HOH A 7 180 180 HOH HOH . G 6 HOH A 8 181 181 HOH HOH . G 6 HOH A 9 182 182 HOH HOH . G 6 HOH A 10 183 183 HOH HOH . G 6 HOH A 11 184 184 HOH HOH . G 6 HOH A 12 185 185 HOH HOH . G 6 HOH A 13 186 186 HOH HOH . G 6 HOH A 14 187 187 HOH HOH . G 6 HOH A 15 188 188 HOH HOH . G 6 HOH A 16 189 189 HOH HOH . G 6 HOH A 17 190 190 HOH HOH . G 6 HOH A 18 191 191 HOH HOH . G 6 HOH A 19 192 192 HOH HOH . G 6 HOH A 20 193 193 HOH HOH . G 6 HOH A 21 194 194 HOH HOH . G 6 HOH A 22 195 195 HOH HOH . G 6 HOH A 23 196 196 HOH HOH . G 6 HOH A 24 197 197 HOH HOH . G 6 HOH A 25 200 200 HOH HOH . G 6 HOH A 26 202 202 HOH HOH . G 6 HOH A 27 204 204 HOH HOH . G 6 HOH A 28 206 206 HOH HOH . G 6 HOH A 29 207 207 HOH HOH . G 6 HOH A 30 208 208 HOH HOH . G 6 HOH A 31 209 209 HOH HOH . G 6 HOH A 32 211 211 HOH HOH . G 6 HOH A 33 213 213 HOH HOH . G 6 HOH A 34 214 214 HOH HOH . G 6 HOH A 35 215 215 HOH HOH . G 6 HOH A 36 216 216 HOH HOH . G 6 HOH A 37 217 217 HOH HOH . G 6 HOH A 38 218 218 HOH HOH . G 6 HOH A 39 219 219 HOH HOH . G 6 HOH A 40 220 220 HOH HOH . G 6 HOH A 41 221 221 HOH HOH . G 6 HOH A 42 222 222 HOH HOH . G 6 HOH A 43 223 223 HOH HOH . G 6 HOH A 44 224 224 HOH HOH . G 6 HOH A 45 225 225 HOH HOH . G 6 HOH A 46 226 226 HOH HOH . G 6 HOH A 47 227 227 HOH HOH . G 6 HOH A 48 228 228 HOH HOH . G 6 HOH A 49 230 230 HOH HOH . G 6 HOH A 50 231 231 HOH HOH . G 6 HOH A 51 232 232 HOH HOH . G 6 HOH A 52 233 233 HOH HOH . G 6 HOH A 53 234 234 HOH HOH . G 6 HOH A 54 236 236 HOH HOH . G 6 HOH A 55 237 237 HOH HOH . G 6 HOH A 56 238 238 HOH HOH . G 6 HOH A 57 239 239 HOH HOH . G 6 HOH A 58 240 240 HOH HOH . G 6 HOH A 59 242 242 HOH HOH . G 6 HOH A 60 244 244 HOH HOH . G 6 HOH A 61 245 245 HOH HOH . G 6 HOH A 62 246 246 HOH HOH . G 6 HOH A 63 247 247 HOH HOH . G 6 HOH A 64 248 248 HOH HOH . G 6 HOH A 65 249 249 HOH HOH . G 6 HOH A 66 250 250 HOH HOH . G 6 HOH A 67 251 251 HOH HOH . G 6 HOH A 68 253 253 HOH HOH . G 6 HOH A 69 254 254 HOH HOH . G 6 HOH A 70 256 256 HOH HOH . G 6 HOH A 71 257 257 HOH HOH . G 6 HOH A 72 258 258 HOH HOH . G 6 HOH A 73 259 259 HOH HOH . G 6 HOH A 74 260 260 HOH HOH . G 6 HOH A 75 261 261 HOH HOH . G 6 HOH A 76 262 262 HOH HOH . G 6 HOH A 77 266 266 HOH HOH . G 6 HOH A 78 269 269 HOH HOH . G 6 HOH A 79 270 270 HOH HOH . G 6 HOH A 80 272 272 HOH HOH . G 6 HOH A 81 273 273 HOH HOH . G 6 HOH A 82 274 274 HOH HOH . G 6 HOH A 83 276 276 HOH HOH . G 6 HOH A 84 278 278 HOH HOH . G 6 HOH A 85 279 279 HOH HOH . G 6 HOH A 86 281 281 HOH HOH . G 6 HOH A 87 282 282 HOH HOH . G 6 HOH A 88 283 283 HOH HOH . G 6 HOH A 89 284 284 HOH HOH . G 6 HOH A 90 285 285 HOH HOH . G 6 HOH A 91 286 286 HOH HOH . G 6 HOH A 92 288 288 HOH HOH . G 6 HOH A 93 291 291 HOH HOH . G 6 HOH A 94 292 292 HOH HOH . G 6 HOH A 95 294 294 HOH HOH . G 6 HOH A 96 295 295 HOH HOH . G 6 HOH A 97 296 296 HOH HOH . G 6 HOH A 98 297 297 HOH HOH . G 6 HOH A 99 299 299 HOH HOH . G 6 HOH A 100 301 301 HOH HOH . G 6 HOH A 101 302 302 HOH HOH . G 6 HOH A 102 304 304 HOH HOH . G 6 HOH A 103 306 306 HOH HOH . G 6 HOH A 104 308 308 HOH HOH . G 6 HOH A 105 312 312 HOH HOH . G 6 HOH A 106 313 313 HOH HOH . G 6 HOH A 107 314 314 HOH HOH . G 6 HOH A 108 315 315 HOH HOH . G 6 HOH A 109 317 317 HOH HOH . G 6 HOH A 110 319 319 HOH HOH . G 6 HOH A 111 320 320 HOH HOH . G 6 HOH A 112 322 322 HOH HOH . G 6 HOH A 113 401 401 HOH HOH . G 6 HOH A 114 402 402 HOH HOH . G 6 HOH A 115 403 403 HOH HOH . G 6 HOH A 116 404 404 HOH HOH . G 6 HOH A 117 405 405 HOH HOH . G 6 HOH A 118 406 406 HOH HOH . G 6 HOH A 119 407 407 HOH HOH . G 6 HOH A 120 408 408 HOH HOH . G 6 HOH A 121 409 409 HOH HOH . G 6 HOH A 122 410 410 HOH HOH . G 6 HOH A 123 411 411 HOH HOH . G 6 HOH A 124 412 412 HOH HOH . G 6 HOH A 125 413 413 HOH HOH . G 6 HOH A 126 414 414 HOH HOH . G 6 HOH A 127 415 415 HOH HOH . G 6 HOH A 128 416 416 HOH HOH . G 6 HOH A 129 417 417 HOH HOH . G 6 HOH A 130 418 418 HOH HOH . G 6 HOH A 131 419 419 HOH HOH . G 6 HOH A 132 420 420 HOH HOH . G 6 HOH A 133 422 422 HOH HOH . G 6 HOH A 134 424 424 HOH HOH . G 6 HOH A 135 425 425 HOH HOH . G 6 HOH A 136 427 427 HOH HOH . G 6 HOH A 137 428 428 HOH HOH . G 6 HOH A 138 429 429 HOH HOH . G 6 HOH A 139 430 430 HOH HOH . G 6 HOH A 140 431 431 HOH HOH . G 6 HOH A 141 432 432 HOH HOH . G 6 HOH A 142 433 433 HOH HOH . G 6 HOH A 143 435 435 HOH HOH . G 6 HOH A 144 436 436 HOH HOH . G 6 HOH A 145 437 437 HOH HOH . G 6 HOH A 146 438 438 HOH HOH . G 6 HOH A 147 439 439 HOH HOH . G 6 HOH A 148 442 442 HOH HOH . G 6 HOH A 149 443 443 HOH HOH . G 6 HOH A 150 444 444 HOH HOH . G 6 HOH A 151 445 445 HOH HOH . G 6 HOH A 152 446 446 HOH HOH . G 6 HOH A 153 448 448 HOH HOH . G 6 HOH A 154 449 449 HOH HOH . G 6 HOH A 155 450 450 HOH HOH . G 6 HOH A 156 451 451 HOH HOH . G 6 HOH A 157 453 453 HOH HOH . G 6 HOH A 158 454 454 HOH HOH . G 6 HOH A 159 456 456 HOH HOH . G 6 HOH A 160 457 457 HOH HOH . G 6 HOH A 161 458 458 HOH HOH . G 6 HOH A 162 459 459 HOH HOH . G 6 HOH A 163 461 461 HOH HOH . G 6 HOH A 164 462 462 HOH HOH . G 6 HOH A 165 464 464 HOH HOH . G 6 HOH A 166 466 466 HOH HOH . G 6 HOH A 167 468 468 HOH HOH . G 6 HOH A 168 471 471 HOH HOH . G 6 HOH A 169 473 473 HOH HOH . G 6 HOH A 170 474 474 HOH HOH . G 6 HOH A 171 475 475 HOH HOH . G 6 HOH A 172 476 476 HOH HOH . G 6 HOH A 173 477 477 HOH HOH . G 6 HOH A 174 480 480 HOH HOH . G 6 HOH A 175 491 491 HOH HOH . G 6 HOH A 176 493 493 HOH HOH . G 6 HOH A 177 494 494 HOH HOH . G 6 HOH A 178 495 495 HOH HOH . G 6 HOH A 179 496 496 HOH HOH . G 6 HOH A 180 497 497 HOH HOH . G 6 HOH A 181 498 498 HOH HOH . G 6 HOH A 182 499 499 HOH HOH . G 6 HOH A 183 500 500 HOH HOH . G 6 HOH A 184 501 501 HOH HOH . G 6 HOH A 185 503 503 HOH HOH . G 6 HOH A 186 504 504 HOH HOH . G 6 HOH A 187 505 505 HOH HOH . G 6 HOH A 188 506 506 HOH HOH . G 6 HOH A 189 507 507 HOH HOH . G 6 HOH A 190 508 508 HOH HOH . G 6 HOH A 191 509 509 HOH HOH . G 6 HOH A 192 510 510 HOH HOH . G 6 HOH A 193 511 511 HOH HOH . G 6 HOH A 194 512 512 HOH HOH . G 6 HOH A 195 513 513 HOH HOH . G 6 HOH A 196 514 514 HOH HOH . G 6 HOH A 197 515 515 HOH HOH . G 6 HOH A 198 516 516 HOH HOH . G 6 HOH A 199 517 517 HOH HOH . G 6 HOH A 200 518 518 HOH HOH . G 6 HOH A 201 519 519 HOH HOH . G 6 HOH A 202 520 520 HOH HOH . G 6 HOH A 203 521 521 HOH HOH . G 6 HOH A 204 522 522 HOH HOH . G 6 HOH A 205 523 523 HOH HOH . G 6 HOH A 206 524 524 HOH HOH . G 6 HOH A 207 526 526 HOH HOH . G 6 HOH A 208 527 527 HOH HOH . G 6 HOH A 209 528 528 HOH HOH . G 6 HOH A 210 529 529 HOH HOH . G 6 HOH A 211 531 531 HOH HOH . G 6 HOH A 212 532 532 HOH HOH . G 6 HOH A 213 534 534 HOH HOH . G 6 HOH A 214 535 535 HOH HOH . G 6 HOH A 215 536 536 HOH HOH . G 6 HOH A 216 539 539 HOH HOH . G 6 HOH A 217 540 540 HOH HOH . G 6 HOH A 218 541 541 HOH HOH . G 6 HOH A 219 542 542 HOH HOH . G 6 HOH A 220 544 544 HOH HOH . G 6 HOH A 221 545 545 HOH HOH . G 6 HOH A 222 547 547 HOH HOH . G 6 HOH A 223 548 548 HOH HOH . G 6 HOH A 224 549 549 HOH HOH . G 6 HOH A 225 550 550 HOH HOH . G 6 HOH A 226 551 551 HOH HOH . G 6 HOH A 227 563 563 HOH HOH . G 6 HOH A 228 564 564 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HED . . . F 5 32.433 0.866 21.405 0.5 20.63 ? C1 HED 966 A 1 HETATM 2 O O1 HED . . . F 5 33.237 1.622 22.257 0.5 14.32 ? O1 HED 966 A 1 HETATM 3 C C2 HED . . . F 5 33.35 0.458 20.254 0.5 4.61 ? C2 HED 966 A 1 HETATM 4 S S3 HED . . . F 5 33.228 1.608 18.861 0.5 21.84 ? S3 HED 966 A 1 HETATM 5 S S4 HED . . . F 5 31.42 1.253 17.966 0.5 37.85 ? S4 HED 966 A 1 HETATM 6 C C5 HED . . . F 5 31.467 2.075 16.362 0.5 100 ? C5 HED 966 A 1 HETATM 7 C C6 HED . . . F 5 32.784 1.936 15.611 0.5 96.88 ? C6 HED 966 A 1 HETATM 8 O O6 HED . . . F 5 32.95 0.637 15.113 0.5 12.32 ? O6 HED 966 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #