data_1PR1 # _model_server_result.job_id Q6XMthYlfMTw2gmzXfuJPA _model_server_result.datetime_utc '2024-11-22 06:13:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pr1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":246}' # _entry.id 1PR1 # _exptl.entry_id 1PR1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 268.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMYCIN B' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1PR1 _cell.length_a 120.9 _cell.length_b 120.9 _cell.length_c 240.2 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PR1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 40.033333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # _chem_comp.formula 'C10 H12 N4 O5' _chem_comp.formula_weight 268.226 _chem_comp.id FMB _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMYCIN B' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMB sing 83 n y N1 C6 FMB sing 84 n y N1 HN1 FMB sing 85 n n C2 N3 FMB doub 86 n y C2 H2 FMB sing 87 n n N3 C4 FMB sing 88 n y C4 C5 FMB doub 89 n y C4 C9 FMB sing 90 n y C5 C6 FMB sing 91 n y C5 N7 FMB sing 92 n y C6 O6 FMB doub 93 n n N7 N8 FMB sing 94 n y N7 HN7 FMB sing 95 n n N8 C9 FMB doub 96 n y C9 C1' FMB sing 97 n n C1' C2' FMB sing 98 n n C1' O4' FMB sing 99 n n C1' H1' FMB sing 100 n n C2' O2' FMB sing 101 n n C2' C3' FMB sing 102 n n C2' H2' FMB sing 103 n n O2' HO2 FMB sing 104 n n C3' O3' FMB sing 105 n n C3' C4' FMB sing 106 n n C3' H3' FMB sing 107 n n O3' HO3 FMB sing 108 n n C4' O4' FMB sing 109 n n C4' C5' FMB sing 110 n n C4' H4' FMB sing 111 n n C5' O5' FMB sing 112 n n C5' "H5'1" FMB sing 113 n n C5' "H5'2" FMB sing 114 n n O5' HO5 FMB sing 115 n n # _atom_sites.entry_id 1PR1 _atom_sites.fract_transf_matrix[1][1] 0.008271 _atom_sites.fract_transf_matrix[1][2] 0.004775 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 A 1 248 247 PO4 PO4 . E 3 FMB A 1 245 245 FMB FMB . F 2 PO4 B 1 249 247 PO4 PO4 . G 3 FMB B 1 246 245 FMB FMB . H 2 PO4 C 1 250 247 PO4 PO4 . I 3 FMB C 1 247 245 FMB FMB . J 4 HOH A 1 249 1 HOH WAT . J 4 HOH A 2 250 4 HOH WAT . J 4 HOH A 3 251 5 HOH WAT . J 4 HOH A 4 252 6 HOH WAT . J 4 HOH A 5 253 7 HOH WAT . J 4 HOH A 6 254 8 HOH WAT . J 4 HOH A 7 255 9 HOH WAT . J 4 HOH A 8 256 10 HOH WAT . J 4 HOH A 9 257 11 HOH WAT . J 4 HOH A 10 258 12 HOH WAT . J 4 HOH A 11 259 13 HOH WAT . J 4 HOH A 12 260 14 HOH WAT . J 4 HOH A 13 261 15 HOH WAT . J 4 HOH A 14 262 19 HOH WAT . J 4 HOH A 15 263 20 HOH WAT . J 4 HOH A 16 264 21 HOH WAT . J 4 HOH A 17 265 23 HOH WAT . J 4 HOH A 18 266 24 HOH WAT . J 4 HOH A 19 267 25 HOH WAT . J 4 HOH A 20 268 26 HOH WAT . J 4 HOH A 21 269 27 HOH WAT . J 4 HOH A 22 270 28 HOH WAT . J 4 HOH A 23 271 29 HOH WAT . J 4 HOH A 24 272 30 HOH WAT . J 4 HOH A 25 273 31 HOH WAT . J 4 HOH A 26 274 32 HOH WAT . J 4 HOH A 27 275 33 HOH WAT . J 4 HOH A 28 276 34 HOH WAT . J 4 HOH A 29 277 35 HOH WAT . J 4 HOH A 30 278 36 HOH WAT . J 4 HOH A 31 279 37 HOH WAT . J 4 HOH A 32 280 39 HOH WAT . J 4 HOH A 33 281 42 HOH WAT . J 4 HOH A 34 282 43 HOH WAT . J 4 HOH A 35 283 44 HOH WAT . J 4 HOH A 36 284 45 HOH WAT . J 4 HOH A 37 285 46 HOH WAT . J 4 HOH A 38 286 47 HOH WAT . J 4 HOH A 39 287 48 HOH WAT . J 4 HOH A 40 288 49 HOH WAT . J 4 HOH A 41 289 51 HOH WAT . J 4 HOH A 42 290 52 HOH WAT . J 4 HOH A 43 291 60 HOH WAT . J 4 HOH A 44 292 64 HOH WAT . J 4 HOH A 45 293 65 HOH WAT . J 4 HOH A 46 294 66 HOH WAT . J 4 HOH A 47 295 67 HOH WAT . J 4 HOH A 48 296 68 HOH WAT . J 4 HOH A 49 297 70 HOH WAT . J 4 HOH A 50 298 71 HOH WAT . J 4 HOH A 51 299 73 HOH WAT . J 4 HOH A 52 300 74 HOH WAT . J 4 HOH A 53 301 75 HOH WAT . J 4 HOH A 54 302 77 HOH WAT . J 4 HOH A 55 303 147 HOH WAT . K 4 HOH B 1 250 2 HOH WAT . K 4 HOH B 2 251 38 HOH WAT . K 4 HOH B 3 252 79 HOH WAT . K 4 HOH B 4 253 81 HOH WAT . K 4 HOH B 5 254 83 HOH WAT . K 4 HOH B 6 255 84 HOH WAT . K 4 HOH B 7 256 85 HOH WAT . K 4 HOH B 8 257 86 HOH WAT . K 4 HOH B 9 258 88 HOH WAT . K 4 HOH B 10 259 93 HOH WAT . K 4 HOH B 11 260 96 HOH WAT . K 4 HOH B 12 261 97 HOH WAT . K 4 HOH B 13 262 99 HOH WAT . K 4 HOH B 14 263 101 HOH WAT . K 4 HOH B 15 264 102 HOH WAT . K 4 HOH B 16 265 103 HOH WAT . K 4 HOH B 17 266 104 HOH WAT . K 4 HOH B 18 267 105 HOH WAT . K 4 HOH B 19 268 106 HOH WAT . K 4 HOH B 20 269 107 HOH WAT . K 4 HOH B 21 270 108 HOH WAT . K 4 HOH B 22 271 109 HOH WAT . K 4 HOH B 23 272 110 HOH WAT . K 4 HOH B 24 273 112 HOH WAT . K 4 HOH B 25 274 114 HOH WAT . K 4 HOH B 26 275 115 HOH WAT . K 4 HOH B 27 276 116 HOH WAT . K 4 HOH B 28 277 117 HOH WAT . K 4 HOH B 29 278 118 HOH WAT . K 4 HOH B 30 279 119 HOH WAT . K 4 HOH B 31 280 120 HOH WAT . K 4 HOH B 32 281 121 HOH WAT . K 4 HOH B 33 282 122 HOH WAT . K 4 HOH B 34 283 123 HOH WAT . K 4 HOH B 35 284 125 HOH WAT . K 4 HOH B 36 285 126 HOH WAT . K 4 HOH B 37 286 136 HOH WAT . K 4 HOH B 38 287 137 HOH WAT . K 4 HOH B 39 288 166 HOH WAT . L 4 HOH C 1 251 127 HOH WAT . L 4 HOH C 2 252 129 HOH WAT . L 4 HOH C 3 253 131 HOH WAT . L 4 HOH C 4 254 132 HOH WAT . L 4 HOH C 5 255 134 HOH WAT . L 4 HOH C 6 256 138 HOH WAT . L 4 HOH C 7 257 139 HOH WAT . L 4 HOH C 8 258 140 HOH WAT . L 4 HOH C 9 259 141 HOH WAT . L 4 HOH C 10 260 142 HOH WAT . L 4 HOH C 11 261 143 HOH WAT . L 4 HOH C 12 262 144 HOH WAT . L 4 HOH C 13 263 145 HOH WAT . L 4 HOH C 14 264 146 HOH WAT . L 4 HOH C 15 265 148 HOH WAT . L 4 HOH C 16 266 153 HOH WAT . L 4 HOH C 17 267 154 HOH WAT . L 4 HOH C 18 268 155 HOH WAT . L 4 HOH C 19 269 158 HOH WAT . L 4 HOH C 20 270 159 HOH WAT . L 4 HOH C 21 271 160 HOH WAT . L 4 HOH C 22 272 161 HOH WAT . L 4 HOH C 23 273 162 HOH WAT . L 4 HOH C 24 274 163 HOH WAT . L 4 HOH C 25 275 164 HOH WAT . L 4 HOH C 26 276 165 HOH WAT . L 4 HOH C 27 277 167 HOH WAT . L 4 HOH C 28 278 168 HOH WAT . L 4 HOH C 29 279 169 HOH WAT . L 4 HOH C 30 280 170 HOH WAT . L 4 HOH C 31 281 171 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMB . . . G 3 73.833 37.261 -4.312 1 29.29 ? N1 FMB 246 B 1 HETATM 2 C C2 FMB . . . G 3 73.945 36.247 -3.331 1 27.61 ? C2 FMB 246 B 1 HETATM 3 N N3 FMB . . . G 3 74.39 34.994 -3.722 1 25.93 ? N3 FMB 246 B 1 HETATM 4 C C4 FMB . . . G 3 74.694 34.824 -5.06 1 26.06 ? C4 FMB 246 B 1 HETATM 5 C C5 FMB . . . G 3 74.59 35.807 -6.062 1 25.64 ? C5 FMB 246 B 1 HETATM 6 C C6 FMB . . . G 3 74.14 37.1 -5.698 1 26.57 ? C6 FMB 246 B 1 HETATM 7 O O6 FMB . . . G 3 74.02 38.031 -6.475 1 26.53 ? O6 FMB 246 B 1 HETATM 8 N N7 FMB . . . G 3 74.968 35.351 -7.293 1 26.3 ? N7 FMB 246 B 1 HETATM 9 N N8 FMB . . . G 3 75.331 34.031 -7.059 1 28.99 ? N8 FMB 246 B 1 HETATM 10 C C9 FMB . . . G 3 75.165 33.675 -5.703 1 28.46 ? C9 FMB 246 B 1 HETATM 11 C C1' FMB . . . G 3 75.485 32.321 -5.249 1 29.37 ? C1' FMB 246 B 1 HETATM 12 C C2' FMB . . . G 3 75.55 32.006 -3.716 1 29.83 ? C2' FMB 246 B 1 HETATM 13 O O2' FMB . . . G 3 76.847 31.472 -3.486 1 29.22 ? O2' FMB 246 B 1 HETATM 14 C C3' FMB . . . G 3 74.421 31.011 -3.408 1 30.13 ? C3' FMB 246 B 1 HETATM 15 O O3' FMB . . . G 3 74.879 29.683 -3.103 1 30.55 ? O3' FMB 246 B 1 HETATM 16 C C4' FMB . . . G 3 73.633 30.867 -4.689 1 30.08 ? C4' FMB 246 B 1 HETATM 17 O O4' FMB . . . G 3 74.377 31.535 -5.732 1 31.06 ? O4' FMB 246 B 1 HETATM 18 C C5' FMB . . . G 3 72.221 31.455 -4.547 1 28.65 ? C5' FMB 246 B 1 HETATM 19 O O5' FMB . . . G 3 71.733 31.959 -5.799 1 29.06 ? O5' FMB 246 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #