data_1PR5 # _model_server_result.job_id ycu2lnJzO7rwa3HgGZuM0A _model_server_result.datetime_utc '2024-11-04 23:46:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pr5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1250}' # _entry.id 1PR5 # _exptl.entry_id 1PR5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1PR5 _cell.length_a 120.8 _cell.length_b 120.8 _cell.length_c 239.9 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PR5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 39.983333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 1PR5 _atom_sites.fract_transf_matrix[1][1] 0.008278 _atom_sites.fract_transf_matrix[1][2] 0.004779 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009559 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 A 1 1248 247 PO4 PO4 . E 3 TBN A 1 1245 245 TBN TBN . F 2 PO4 B 1 1249 247 PO4 PO4 . G 3 TBN B 1 1246 245 TBN TBN . H 2 PO4 C 1 1250 247 PO4 PO4 . I 3 TBN C 1 1247 245 TBN TBN . J 4 HOH A 1 1249 1 HOH WAT . J 4 HOH A 2 1250 2 HOH WAT . J 4 HOH A 3 1251 3 HOH WAT . J 4 HOH A 4 1252 4 HOH WAT . J 4 HOH A 5 1253 5 HOH WAT . J 4 HOH A 6 1254 7 HOH WAT . J 4 HOH A 7 1255 8 HOH WAT . J 4 HOH A 8 1256 9 HOH WAT . J 4 HOH A 9 1257 10 HOH WAT . J 4 HOH A 10 1258 11 HOH WAT . J 4 HOH A 11 1259 12 HOH WAT . J 4 HOH A 12 1260 13 HOH WAT . J 4 HOH A 13 1261 15 HOH WAT . J 4 HOH A 14 1262 16 HOH WAT . J 4 HOH A 15 1263 17 HOH WAT . J 4 HOH A 16 1264 18 HOH WAT . J 4 HOH A 17 1265 19 HOH WAT . J 4 HOH A 18 1266 20 HOH WAT . J 4 HOH A 19 1267 21 HOH WAT . J 4 HOH A 20 1268 22 HOH WAT . J 4 HOH A 21 1269 23 HOH WAT . J 4 HOH A 22 1270 24 HOH WAT . J 4 HOH A 23 1271 25 HOH WAT . J 4 HOH A 24 1272 26 HOH WAT . J 4 HOH A 25 1273 27 HOH WAT . J 4 HOH A 26 1274 28 HOH WAT . J 4 HOH A 27 1275 30 HOH WAT . J 4 HOH A 28 1276 31 HOH WAT . J 4 HOH A 29 1277 32 HOH WAT . J 4 HOH A 30 1278 33 HOH WAT . J 4 HOH A 31 1279 35 HOH WAT . J 4 HOH A 32 1280 36 HOH WAT . J 4 HOH A 33 1281 37 HOH WAT . J 4 HOH A 34 1282 38 HOH WAT . J 4 HOH A 35 1283 40 HOH WAT . J 4 HOH A 36 1284 42 HOH WAT . J 4 HOH A 37 1285 43 HOH WAT . J 4 HOH A 38 1286 44 HOH WAT . J 4 HOH A 39 1287 45 HOH WAT . J 4 HOH A 40 1288 46 HOH WAT . J 4 HOH A 41 1289 47 HOH WAT . J 4 HOH A 42 1290 48 HOH WAT . J 4 HOH A 43 1291 104 HOH WAT . J 4 HOH A 44 1292 105 HOH WAT . K 4 HOH B 1 1250 29 HOH WAT . K 4 HOH B 2 1251 39 HOH WAT . K 4 HOH B 3 1252 41 HOH WAT . K 4 HOH B 4 1253 49 HOH WAT . K 4 HOH B 5 1254 50 HOH WAT . K 4 HOH B 6 1255 51 HOH WAT . K 4 HOH B 7 1256 52 HOH WAT . K 4 HOH B 8 1257 53 HOH WAT . K 4 HOH B 9 1258 54 HOH WAT . K 4 HOH B 10 1259 55 HOH WAT . K 4 HOH B 11 1260 56 HOH WAT . K 4 HOH B 12 1261 57 HOH WAT . K 4 HOH B 13 1262 58 HOH WAT . K 4 HOH B 14 1263 59 HOH WAT . K 4 HOH B 15 1264 60 HOH WAT . K 4 HOH B 16 1265 61 HOH WAT . K 4 HOH B 17 1266 62 HOH WAT . K 4 HOH B 18 1267 63 HOH WAT . K 4 HOH B 19 1268 64 HOH WAT . K 4 HOH B 20 1269 66 HOH WAT . K 4 HOH B 21 1270 67 HOH WAT . K 4 HOH B 22 1271 68 HOH WAT . K 4 HOH B 23 1272 69 HOH WAT . K 4 HOH B 24 1273 70 HOH WAT . K 4 HOH B 25 1274 71 HOH WAT . K 4 HOH B 26 1275 72 HOH WAT . K 4 HOH B 27 1276 73 HOH WAT . K 4 HOH B 28 1277 74 HOH WAT . K 4 HOH B 29 1278 75 HOH WAT . K 4 HOH B 30 1279 76 HOH WAT . K 4 HOH B 31 1280 77 HOH WAT . K 4 HOH B 32 1281 78 HOH WAT . K 4 HOH B 33 1282 79 HOH WAT . K 4 HOH B 34 1283 80 HOH WAT . K 4 HOH B 35 1284 81 HOH WAT . K 4 HOH B 36 1285 82 HOH WAT . K 4 HOH B 37 1286 83 HOH WAT . K 4 HOH B 38 1287 84 HOH WAT . K 4 HOH B 39 1288 106 HOH WAT . L 4 HOH C 1 1251 14 HOH WAT . L 4 HOH C 2 1252 34 HOH WAT . L 4 HOH C 3 1253 65 HOH WAT . L 4 HOH C 4 1254 85 HOH WAT . L 4 HOH C 5 1255 86 HOH WAT . L 4 HOH C 6 1256 87 HOH WAT . L 4 HOH C 7 1257 88 HOH WAT . L 4 HOH C 8 1258 89 HOH WAT . L 4 HOH C 9 1259 90 HOH WAT . L 4 HOH C 10 1260 91 HOH WAT . L 4 HOH C 11 1261 92 HOH WAT . L 4 HOH C 12 1262 93 HOH WAT . L 4 HOH C 13 1263 94 HOH WAT . L 4 HOH C 14 1264 95 HOH WAT . L 4 HOH C 15 1265 96 HOH WAT . L 4 HOH C 16 1266 97 HOH WAT . L 4 HOH C 17 1267 98 HOH WAT . L 4 HOH C 18 1268 99 HOH WAT . L 4 HOH C 19 1269 100 HOH WAT . L 4 HOH C 20 1270 101 HOH WAT . L 4 HOH C 21 1271 102 HOH WAT . L 4 HOH C 22 1272 103 HOH WAT . L 4 HOH C 23 1273 108 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . H 2 48.737 47.549 32.11 1 20.36 ? P PO4 1250 C 1 HETATM 2 O O1 PO4 . . . H 2 47.669 48.572 31.672 1 21.14 ? O1 PO4 1250 C 1 HETATM 3 O O2 PO4 . . . H 2 49.689 48.178 33.12 1 22.53 ? O2 PO4 1250 C 1 HETATM 4 O O3 PO4 . . . H 2 48.11 46.308 32.72 1 20.66 ? O3 PO4 1250 C 1 HETATM 5 O O4 PO4 . . . H 2 49.539 47.13 30.835 1 22.13 ? O4 PO4 1250 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #