data_1PRH # _model_server_result.job_id sbPUrYQGtV35sxHnKjpXpA _model_server_result.datetime_utc '2024-11-25 06:30:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1prh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 1PRH # _exptl.entry_id 1PRH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PRH _cell.length_a 99.4 _cell.length_b 210.3 _cell.length_c 233.1 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PRH _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 36 1_555 A SG CYS 15 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 A SG CYS 5 A CYS 37 1_555 A SG CYS 127 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 9 A CYS 41 1_555 A SG CYS 25 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf4 A SG CYS 27 A CYS 59 1_555 A SG CYS 37 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf5 A SG CYS 537 A CYS 569 1_555 A SG CYS 543 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 4 B CYS 36 1_555 B SG CYS 15 B CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 B SG CYS 5 B CYS 37 1_555 B SG CYS 127 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 B SG CYS 9 B CYS 41 1_555 B SG CYS 25 B CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf9 B SG CYS 27 B CYS 59 1_555 B SG CYS 37 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf10 B SG CYS 537 B CYS 569 1_555 B SG CYS 543 B CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A NE2 HIS 356 A HIS 388 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc2 B NE2 HIS 356 B HIS 388 1_555 D FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1PRH _atom_sites.fract_transf_matrix[1][1] 0.01006 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 601 HEM HEM . D 2 HEM B 1 601 601 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 2 70.27 36.56 182.27 1 15 ? CHA HEM 601 B 1 HETATM 2 C CHB HEM . . . D 2 70.65 32.19 184.13 1 15 ? CHB HEM 601 B 1 HETATM 3 C CHC HEM . . . D 2 73.3 30.83 180.38 1 15 ? CHC HEM 601 B 1 HETATM 4 C CHD HEM . . . D 2 73.35 35.33 178.83 1 15 ? CHD HEM 601 B 1 HETATM 5 C C1A HEM . . . D 2 70.03 35.45 183.04 1 15 ? C1A HEM 601 B 1 HETATM 6 C C2A HEM . . . D 2 69.09 35.37 184.16 1 15 ? C2A HEM 601 B 1 HETATM 7 C C3A HEM . . . D 2 69.28 34.17 184.71 1 15 ? C3A HEM 601 B 1 HETATM 8 C C4A HEM . . . D 2 70.27 33.49 183.92 1 15 ? C4A HEM 601 B 1 HETATM 9 C CMA HEM . . . D 2 68.57 33.68 185.95 1 15 ? CMA HEM 601 B 1 HETATM 10 C CAA HEM . . . D 2 68.05 36.41 184.63 1 15 ? CAA HEM 601 B 1 HETATM 11 C CBA HEM . . . D 2 66.8 36.59 183.73 1 15 ? CBA HEM 601 B 1 HETATM 12 C CGA HEM . . . D 2 65.92 37.82 184.03 1 15 ? CGA HEM 601 B 1 HETATM 13 O O1A HEM . . . D 2 65.57 38.56 183.13 1 15 ? O1A HEM 601 B 1 HETATM 14 O O2A HEM . . . D 2 65.53 38.03 185.18 1 15 ? O2A HEM 601 B 1 HETATM 15 C C1B HEM . . . D 2 71.43 31.45 183.27 1 15 ? C1B HEM 601 B 1 HETATM 16 C C2B HEM . . . D 2 71.7 30.04 183.47 1 15 ? C2B HEM 601 B 1 HETATM 17 C C3B HEM . . . D 2 72.42 29.67 182.39 1 15 ? C3B HEM 601 B 1 HETATM 18 C C4B HEM . . . D 2 72.61 30.84 181.55 1 15 ? C4B HEM 601 B 1 HETATM 19 C CMB HEM . . . D 2 71.25 29.15 184.63 1 15 ? CMB HEM 601 B 1 HETATM 20 C CAB HEM . . . D 2 72.84 28.39 182.1 1 15 ? CAB HEM 601 B 1 HETATM 21 C CBB HEM . . . D 2 74.13 27.87 182.52 1 15 ? CBB HEM 601 B 1 HETATM 22 C C1C HEM . . . D 2 73.47 31.92 179.57 1 15 ? C1C HEM 601 B 1 HETATM 23 C C2C HEM . . . D 2 74.26 31.92 178.33 1 15 ? C2C HEM 601 B 1 HETATM 24 C C3C HEM . . . D 2 74.29 33.19 177.94 1 15 ? C3C HEM 601 B 1 HETATM 25 C C4C HEM . . . D 2 73.55 33.97 178.91 1 15 ? C4C HEM 601 B 1 HETATM 26 C CMC HEM . . . D 2 74.91 30.78 177.56 1 15 ? CMC HEM 601 B 1 HETATM 27 C CAC HEM . . . D 2 74.94 33.64 176.81 1 15 ? CAC HEM 601 B 1 HETATM 28 C CBC HEM . . . D 2 74.22 33.93 175.6 1 15 ? CBC HEM 601 B 1 HETATM 29 C C1D HEM . . . D 2 72.55 36.08 179.66 1 15 ? C1D HEM 601 B 1 HETATM 30 C C2D HEM . . . D 2 72.18 37.46 179.4 1 15 ? C2D HEM 601 B 1 HETATM 31 C C3D HEM . . . D 2 71.27 37.79 180.34 1 15 ? C3D HEM 601 B 1 HETATM 32 C C4D HEM . . . D 2 71.13 36.63 181.19 1 15 ? C4D HEM 601 B 1 HETATM 33 C CMD HEM . . . D 2 72.65 38.35 178.26 1 15 ? CMD HEM 601 B 1 HETATM 34 C CAD HEM . . . D 2 70.4 39.04 180.32 1 15 ? CAD HEM 601 B 1 HETATM 35 C CBD HEM . . . D 2 71.07 40.41 180.52 1 15 ? CBD HEM 601 B 1 HETATM 36 C CGD HEM . . . D 2 71.55 40.82 181.93 1 15 ? CGD HEM 601 B 1 HETATM 37 O O1D HEM . . . D 2 71.24 40.14 182.94 1 15 ? O1D HEM 601 B 1 HETATM 38 O O2D HEM . . . D 2 72.22 41.86 182 1 15 ? O2D HEM 601 B 1 HETATM 39 N NA HEM . . . D 2 70.72 34.27 182.87 1 15 ? NA HEM 601 B 1 HETATM 40 N NB HEM . . . D 2 72 31.93 182.1 1 15 ? NB HEM 601 B 1 HETATM 41 N NC HEM . . . D 2 73.03 33.19 179.9 1 15 ? NC HEM 601 B 1 HETATM 42 N ND HEM . . . D 2 71.89 35.57 180.74 1 15 ? ND HEM 601 B 1 HETATM 43 FE FE HEM . . . D 2 71.94 33.77 181.4 1 15 ? FE HEM 601 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #