data_1PRP # _model_server_result.job_id XuEBBFpXJB3jVzWnJXtkVg _model_server_result.datetime_utc '2024-10-18 14:26:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1prp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":25}' # _entry.id 1PRP # _exptl.entry_id 1PRP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 312.366 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3-BIS(AMIDINOPHENOXY)PROPANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PRP _cell.length_a 25 _cell.length_b 40.88 _cell.length_c 67.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PRP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 9 A DC 9 1_555 B N1 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 9 A DC 9 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 9 A DC 9 1_555 B N2 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C17 H20 N4 O2' _chem_comp.formula_weight 312.366 _chem_comp.id TNT _chem_comp.mon_nstd_flag . _chem_comp.name 1,3-BIS(AMIDINOPHENOXY)PROPANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TNT doub 152 n y C1 C6 TNT sing 153 n y C1 O1 TNT sing 154 n n C2 C3 TNT sing 155 n y C2 H2 TNT sing 156 n n C3 C4 TNT doub 157 n y C3 H3 TNT sing 158 n n C4 C5 TNT sing 159 n y C4 C7 TNT sing 160 n n C5 C6 TNT doub 161 n y C5 H5 TNT sing 162 n n C6 H6 TNT sing 163 n n C7 N1 TNT doub 164 n n C7 N2 TNT sing 165 n n N1 HN1 TNT sing 166 n n N2 HN2 TNT sing 167 n n N2 HN3 TNT sing 168 n n C1' C2' TNT doub 169 n y C1' C6' TNT sing 170 n y C1' O1' TNT sing 171 n n C2' C3' TNT sing 172 n y C2' H2' TNT sing 173 n n C3' C4' TNT doub 174 n y C3' H3' TNT sing 175 n n C4' C5' TNT sing 176 n y C4' C7' TNT sing 177 n n C5' C6' TNT doub 178 n y C5' H5' TNT sing 179 n n C6' H6' TNT sing 180 n n C7' N1' TNT doub 181 n n C7' N2' TNT sing 182 n n N1' "HN'1" TNT sing 183 n n N2' "HN'2" TNT sing 184 n n N2' "HN'3" TNT sing 185 n n CA O1 TNT sing 186 n n CA CB TNT sing 187 n n CA HA1 TNT sing 188 n n CA HA2 TNT sing 189 n n CB CA' TNT sing 190 n n CB HB1 TNT sing 191 n n CB HB2 TNT sing 192 n n CA' O1' TNT sing 193 n n CA' "HA'1" TNT sing 194 n n CA' "HA'2" TNT sing 195 n n # _atom_sites.entry_id 1PRP _atom_sites.fract_transf_matrix[1][1] 0.04 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TNT A 1 25 25 TNT TNT . D 3 HOH A 1 26 26 HOH HOH . D 3 HOH A 2 27 27 HOH HOH . D 3 HOH A 3 28 28 HOH HOH . D 3 HOH A 4 29 29 HOH HOH . D 3 HOH A 5 30 30 HOH HOH . D 3 HOH A 6 31 31 HOH HOH . D 3 HOH A 7 36 36 HOH HOH . D 3 HOH A 8 39 39 HOH HOH . D 3 HOH A 9 42 42 HOH HOH . D 3 HOH A 10 43 43 HOH HOH . D 3 HOH A 11 44 44 HOH HOH . D 3 HOH A 12 45 45 HOH HOH . D 3 HOH A 13 48 48 HOH HOH . D 3 HOH A 14 51 51 HOH HOH . D 3 HOH A 15 53 53 HOH HOH . D 3 HOH A 16 58 58 HOH HOH . D 3 HOH A 17 61 61 HOH HOH . D 3 HOH A 18 62 62 HOH HOH . D 3 HOH A 19 63 63 HOH HOH . D 3 HOH A 20 64 64 HOH HOH . D 3 HOH A 21 65 65 HOH HOH . D 3 HOH A 22 66 66 HOH HOH . D 3 HOH A 23 67 67 HOH HOH . D 3 HOH A 24 69 69 HOH HOH . D 3 HOH A 25 70 70 HOH HOH . D 3 HOH A 26 71 71 HOH HOH . D 3 HOH A 27 76 76 HOH HOH . D 3 HOH A 28 78 78 HOH HOH . D 3 HOH A 29 80 80 HOH HOH . D 3 HOH A 30 81 81 HOH HOH . D 3 HOH A 31 82 82 HOH HOH . D 3 HOH A 32 83 83 HOH HOH . D 3 HOH A 33 84 84 HOH HOH . D 3 HOH A 34 86 86 HOH HOH . D 3 HOH A 35 87 87 HOH HOH . D 3 HOH A 36 88 88 HOH HOH . D 3 HOH A 37 90 90 HOH HOH . D 3 HOH A 38 91 91 HOH HOH . D 3 HOH A 39 92 92 HOH HOH . D 3 HOH A 40 93 93 HOH HOH . E 3 HOH B 1 32 32 HOH HOH . E 3 HOH B 2 33 33 HOH HOH . E 3 HOH B 3 34 34 HOH HOH . E 3 HOH B 4 35 35 HOH HOH . E 3 HOH B 5 37 37 HOH HOH . E 3 HOH B 6 38 38 HOH HOH . E 3 HOH B 7 40 40 HOH HOH . E 3 HOH B 8 41 41 HOH HOH . E 3 HOH B 9 46 46 HOH HOH . E 3 HOH B 10 47 47 HOH HOH . E 3 HOH B 11 49 49 HOH HOH . E 3 HOH B 12 50 50 HOH HOH . E 3 HOH B 13 52 52 HOH HOH . E 3 HOH B 14 54 54 HOH HOH . E 3 HOH B 15 55 55 HOH HOH . E 3 HOH B 16 56 56 HOH HOH . E 3 HOH B 17 57 57 HOH HOH . E 3 HOH B 18 59 59 HOH HOH . E 3 HOH B 19 60 60 HOH HOH . E 3 HOH B 20 68 68 HOH HOH . E 3 HOH B 21 72 72 HOH HOH . E 3 HOH B 22 73 73 HOH HOH . E 3 HOH B 23 74 74 HOH HOH . E 3 HOH B 24 75 75 HOH HOH . E 3 HOH B 25 77 77 HOH HOH . E 3 HOH B 26 79 79 HOH HOH . E 3 HOH B 27 85 85 HOH HOH . E 3 HOH B 28 89 89 HOH HOH . E 3 HOH B 29 94 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TNT . . . C 2 10.314 24.935 5.872 1 36.48 ? C1 TNT 25 A 1 HETATM 2 C C2 TNT . . . C 2 11.354 24.131 5.499 1 37.91 ? C2 TNT 25 A 1 HETATM 3 C C3 TNT . . . C 2 12.104 24.432 4.348 1 38.52 ? C3 TNT 25 A 1 HETATM 4 C C4 TNT . . . C 2 11.831 25.528 3.535 1 38.66 ? C4 TNT 25 A 1 HETATM 5 C C5 TNT . . . C 2 10.765 26.346 3.927 1 37.41 ? C5 TNT 25 A 1 HETATM 6 C C6 TNT . . . C 2 10.032 26.039 5.075 1 37.35 ? C6 TNT 25 A 1 HETATM 7 C C7 TNT . . . C 2 12.525 25.717 2.312 1 40.99 ? C7 TNT 25 A 1 HETATM 8 N N1 TNT . . . C 2 13.492 24.876 1.993 1 43.68 ? N1 TNT 25 A 1 HETATM 9 N N2 TNT . . . C 2 12.166 26.691 1.431 1 40.71 ? N2 TNT 25 A 1 HETATM 10 C C1' TNT . . . C 2 8.242 21.398 11.577 1 37.44 ? C1' TNT 25 A 1 HETATM 11 C C2' TNT . . . C 2 9.527 20.964 11.756 1 38.25 ? C2' TNT 25 A 1 HETATM 12 C C3' TNT . . . C 2 9.865 20.234 12.895 1 39.66 ? C3' TNT 25 A 1 HETATM 13 C C4' TNT . . . C 2 8.963 19.882 13.89 1 40.97 ? C4' TNT 25 A 1 HETATM 14 C C5' TNT . . . C 2 7.64 20.311 13.711 1 39.21 ? C5' TNT 25 A 1 HETATM 15 C C6' TNT . . . C 2 7.298 21.071 12.554 1 39.05 ? C6' TNT 25 A 1 HETATM 16 C C7' TNT . . . C 2 9.51 19.169 15.01 1 44.12 ? C7' TNT 25 A 1 HETATM 17 N N1' TNT . . . C 2 10.649 18.498 14.814 1 46.11 ? N1' TNT 25 A 1 HETATM 18 N N2' TNT . . . C 2 8.846 18.978 16.182 1 45.6 ? N2' TNT 25 A 1 HETATM 19 C CA TNT . . . C 2 9.748 23.617 7.758 1 33.26 ? CA TNT 25 A 1 HETATM 20 O O1 TNT . . . C 2 9.498 24.714 6.93 1 35.12 ? O1 TNT 25 A 1 HETATM 21 C CB TNT . . . C 2 8.558 23.512 8.672 1 33.16 ? CB TNT 25 A 1 HETATM 22 C CA' TNT . . . C 2 8.994 22.588 9.739 1 33.15 ? CA' TNT 25 A 1 HETATM 23 O O1' TNT . . . C 2 7.888 22.205 10.557 1 34.63 ? O1' TNT 25 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #