data_1PS0
#
_model_server_result.job_id            jLoOH-itCEuLZU92SdeRvQ 
_model_server_result.datetime_utc      '2024-12-21 17:55:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ps0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":4292}' 
#
_entry.id    1PS0 
#
_exptl.entry_id    1PS0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1PS0 
_cell.length_a            102.132 
_cell.length_b            102.132 
_cell.length_c            149.717 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1PS0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 149.717 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 46 A CYS 46 1_555 C ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc2 A NE2 HIS 68 A HIS 68 1_555 C ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc3 A SG CYS 100 A CYS 100 1_555 B ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc4 A SG CYS 103 A CYS 103 1_555 B ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc5 A SG CYS 106 A CYS 106 1_555 B ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc6 A SG CYS 114 A CYS 114 1_555 B ZN ZN . A ZN 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc7 A SG CYS 163 A CYS 163 1_555 C ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 235 n n 
PA O2A NAP sing 236 n n 
PA O5B NAP sing 237 n n 
PA O3 NAP sing 238 n n 
O2A HOA2 NAP sing 239 n n 
O5B C5B NAP sing 240 n n 
C5B C4B NAP sing 241 n n 
C5B H51A NAP sing 242 n n 
C5B H52A NAP sing 243 n n 
C4B O4B NAP sing 244 n n 
C4B C3B NAP sing 245 n n 
C4B H4B NAP sing 246 n n 
O4B C1B NAP sing 247 n n 
C3B O3B NAP sing 248 n n 
C3B C2B NAP sing 249 n n 
C3B H3B NAP sing 250 n n 
O3B HO3A NAP sing 251 n n 
C2B O2B NAP sing 252 n n 
C2B C1B NAP sing 253 n n 
C2B H2B NAP sing 254 n n 
O2B P2B NAP sing 255 n n 
C1B N9A NAP sing 256 n n 
C1B H1B NAP sing 257 n n 
N9A C8A NAP sing 258 n y 
N9A C4A NAP sing 259 n y 
C8A N7A NAP doub 260 n y 
C8A H8A NAP sing 261 n n 
N7A C5A NAP sing 262 n y 
C5A C6A NAP sing 263 n y 
C5A C4A NAP doub 264 n y 
C6A N6A NAP sing 265 n n 
C6A N1A NAP doub 266 n y 
N6A H61A NAP sing 267 n n 
N6A H62A NAP sing 268 n n 
N1A C2A NAP sing 269 n y 
C2A N3A NAP doub 270 n y 
C2A H2A NAP sing 271 n n 
N3A C4A NAP sing 272 n y 
O3 PN NAP sing 273 n n 
PN O1N NAP doub 274 n n 
PN O2N NAP sing 275 n n 
PN O5D NAP sing 276 n n 
O5D C5D NAP sing 277 n n 
C5D C4D NAP sing 278 n n 
C5D H51N NAP sing 279 n n 
C5D H52N NAP sing 280 n n 
C4D O4D NAP sing 281 n n 
C4D C3D NAP sing 282 n n 
C4D H4D NAP sing 283 n n 
O4D C1D NAP sing 284 n n 
C3D O3D NAP sing 285 n n 
C3D C2D NAP sing 286 n n 
C3D H3D NAP sing 287 n n 
O3D HO3N NAP sing 288 n n 
C2D O2D NAP sing 289 n n 
C2D C1D NAP sing 290 n n 
C2D H2D NAP sing 291 n n 
O2D HO2N NAP sing 292 n n 
C1D N1N NAP sing 293 n n 
C1D H1D NAP sing 294 n n 
N1N C2N NAP sing 295 n y 
N1N C6N NAP doub 296 n y 
C2N C3N NAP doub 297 n y 
C2N H2N NAP sing 298 n n 
C3N C7N NAP sing 299 n n 
C3N C4N NAP sing 300 n y 
C7N O7N NAP doub 301 n n 
C7N N7N NAP sing 302 n n 
N7N H71N NAP sing 303 n n 
N7N H72N NAP sing 304 n n 
C4N C5N NAP doub 305 n y 
C4N H4N NAP sing 306 n n 
C5N C6N NAP sing 307 n y 
C5N H5N NAP sing 308 n n 
C6N H6N NAP sing 309 n n 
P2B O1X NAP doub 310 n n 
P2B O2X NAP sing 311 n n 
P2B O3X NAP sing 312 n n 
O2X HOP2 NAP sing 313 n n 
O3X HOP3 NAP sing 314 n n 
#
_atom_sites.entry_id                     1PS0 
_atom_sites.fract_transf_matrix[1][1]    0.009791 
_atom_sites.fract_transf_matrix[1][2]    0.005653 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011306 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006679 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1501 1501 ZN ZN . 
C 2 ZN A 1 1502 1502 ZN ZN . 
D 3 NAP A 1 4292 4292 NAP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . D 3 22.629 47.981 51.811 1 94.61 ? PA NAP 4292 A 1 
HETATM 2 O O1A NAP . . . D 3 23.908 48.496 51.485 1 93.13 ? O1A NAP 4292 A 1 
HETATM 3 O O2A NAP . . . D 3 21.654 47.336 50.843 1 94.49 ? O2A NAP 4292 A 1 
HETATM 4 O O5B NAP . . . D 3 21.76 49.129 52.567 1 94.44 ? O5B NAP 4292 A 1 
HETATM 5 C C5B NAP . . . D 3 22.135 49.582 53.904 1 91.08 ? C5B NAP 4292 A 1 
HETATM 6 C C4B NAP . . . D 3 20.753 49.787 54.614 1 89.63 ? C4B NAP 4292 A 1 
HETATM 7 O O4B NAP . . . D 3 21.084 50.219 56.003 1 88.39 ? O4B NAP 4292 A 1 
HETATM 8 C C3B NAP . . . D 3 19.856 50.952 54.066 1 88.92 ? C3B NAP 4292 A 1 
HETATM 9 O O3B NAP . . . D 3 18.783 50.321 53.359 1 89.41 ? O3B NAP 4292 A 1 
HETATM 10 C C2B NAP . . . D 3 19.376 51.74 55.297 1 88.15 ? C2B NAP 4292 A 1 
HETATM 11 O O2B NAP . . . D 3 18.039 51.402 55.801 1 86.62 ? O2B NAP 4292 A 1 
HETATM 12 C C1B NAP . . . D 3 20.48 51.446 56.385 1 87.25 ? C1B NAP 4292 A 1 
HETATM 13 N N9A NAP . . . D 3 21.446 52.556 56.492 1 84.1 ? N9A NAP 4292 A 1 
HETATM 14 C C8A NAP . . . D 3 22.295 53.147 55.576 1 83.27 ? C8A NAP 4292 A 1 
HETATM 15 N N7A NAP . . . D 3 23.025 54.142 56.066 1 82.14 ? N7A NAP 4292 A 1 
HETATM 16 C C5A NAP . . . D 3 22.626 54.203 57.393 1 81.77 ? C5A NAP 4292 A 1 
HETATM 17 C C6A NAP . . . D 3 23.049 55.064 58.431 1 81.08 ? C6A NAP 4292 A 1 
HETATM 18 N N6A NAP . . . D 3 23.966 56.05 58.357 1 79.91 ? N6A NAP 4292 A 1 
HETATM 19 N N1A NAP . . . D 3 22.456 54.882 59.69 1 80.72 ? N1A NAP 4292 A 1 
HETATM 20 C C2A NAP . . . D 3 21.483 53.884 59.896 1 81.33 ? C2A NAP 4292 A 1 
HETATM 21 N N3A NAP . . . D 3 21.047 53.025 58.898 1 81.21 ? N3A NAP 4292 A 1 
HETATM 22 C C4A NAP . . . D 3 21.648 53.221 57.66 1 82.53 ? C4A NAP 4292 A 1 
HETATM 23 O O3 NAP . . . D 3 22.788 46.898 52.942 1 94.31 ? O3 NAP 4292 A 1 
HETATM 24 P PN NAP . . . D 3 23.041 45.34 52.91 1 94.73 ? PN NAP 4292 A 1 
HETATM 25 O O1N NAP . . . D 3 23.884 44.951 51.755 1 92.51 ? O1N NAP 4292 A 1 
HETATM 26 O O2N NAP . . . D 3 21.688 44.736 52.991 1 93.81 ? O2N NAP 4292 A 1 
HETATM 27 O O5D NAP . . . D 3 23.903 45.128 54.236 1 93.45 ? O5D NAP 4292 A 1 
HETATM 28 C C5D NAP . . . D 3 25.276 45.635 54.271 1 92.38 ? C5D NAP 4292 A 1 
HETATM 29 C C4D NAP . . . D 3 25.749 45.688 55.708 1 91 ? C4D NAP 4292 A 1 
HETATM 30 O O4D NAP . . . D 3 25.789 44.335 56.25 1 90.03 ? O4D NAP 4292 A 1 
HETATM 31 C C3D NAP . . . D 3 27.208 46.232 55.867 1 91.33 ? C3D NAP 4292 A 1 
HETATM 32 O O3D NAP . . . D 3 27.337 47.021 57.072 1 90.98 ? O3D NAP 4292 A 1 
HETATM 33 C C2D NAP . . . D 3 28.033 44.949 55.876 1 90.71 ? C2D NAP 4292 A 1 
HETATM 34 O O2D NAP . . . D 3 29.36 45.113 56.383 1 89.54 ? O2D NAP 4292 A 1 
HETATM 35 C C1D NAP . . . D 3 27.161 44.053 56.712 1 89.77 ? C1D NAP 4292 A 1 
HETATM 36 N N1N NAP . . . D 3 27.292 42.576 56.534 1 88.24 ? N1N NAP 4292 A 1 
HETATM 37 C C2N NAP . . . D 3 27.543 41.7 57.624 1 88.26 ? C2N NAP 4292 A 1 
HETATM 38 C C3N NAP . . . D 3 27.654 40.324 57.366 1 87.6 ? C3N NAP 4292 A 1 
HETATM 39 C C7N NAP . . . D 3 27.924 39.36 58.532 1 87.05 ? C7N NAP 4292 A 1 
HETATM 40 O O7N NAP . . . D 3 28.014 38.195 58.237 1 86.55 ? O7N NAP 4292 A 1 
HETATM 41 N N7N NAP . . . D 3 28.05 39.783 59.77 1 85.56 ? N7N NAP 4292 A 1 
HETATM 42 C C4N NAP . . . D 3 27.519 39.786 56.008 1 86.92 ? C4N NAP 4292 A 1 
HETATM 43 C C5N NAP . . . D 3 27.268 40.702 54.953 1 87.72 ? C5N NAP 4292 A 1 
HETATM 44 C C6N NAP . . . D 3 27.149 42.104 55.188 1 88.07 ? C6N NAP 4292 A 1 
HETATM 45 P P2B NAP . . . D 3 16.711 52.416 55.872 1 83.5 ? P2B NAP 4292 A 1 
HETATM 46 O O1X NAP . . . D 3 16.449 52.727 57.355 1 82.24 ? O1X NAP 4292 A 1 
HETATM 47 O O2X NAP . . . D 3 17.188 53.598 55.087 1 83.53 ? O2X NAP 4292 A 1 
HETATM 48 O O3X NAP . . . D 3 15.543 51.659 55.289 1 82.75 ? O3X NAP 4292 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           48 
#