data_1PSD # _model_server_result.job_id pPUlDyW5gNrVMMyeN2421Q _model_server_result.datetime_utc '2024-11-25 22:25:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1psd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":451}' # _entry.id 1PSD # _exptl.entry_id 1PSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 105.093 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SERINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PSD _cell.length_a 136.1 _cell.length_b 146.3 _cell.length_c 53.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 136.1 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C3 H7 N O3' _chem_comp.formula_weight 105.093 _chem_comp.id SER _chem_comp.mon_nstd_flag y _chem_comp.name SERINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SER sing 352 n n N H SER sing 353 n n N H2 SER sing 354 n n CA C SER sing 355 n n CA CB SER sing 356 n n CA HA SER sing 357 n n C O SER doub 358 n n C OXT SER sing 359 n n CB OG SER sing 360 n n CB HB2 SER sing 361 n n CB HB3 SER sing 362 n n OG HG SER sing 363 n n OXT HXT SER sing 364 n n # _atom_sites.entry_id 1PSD _atom_sites.fract_transf_matrix[1][1] 0.007348 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 450 450 NAD NAD . D 3 SER A 1 451 451 SER SER . E 2 NAD B 1 450 450 NAD NAD . F 3 SER B 1 451 451 SER SER . G 4 HOH A 1 500 500 HOH HOH . G 4 HOH A 2 501 501 HOH HOH . G 4 HOH A 3 502 502 HOH HOH . G 4 HOH A 4 503 503 HOH HOH . G 4 HOH A 5 504 504 HOH HOH . G 4 HOH A 6 505 505 HOH HOH . G 4 HOH A 7 506 506 HOH HOH . G 4 HOH A 8 507 507 HOH HOH . G 4 HOH A 9 508 508 HOH HOH . G 4 HOH A 10 509 509 HOH HOH . G 4 HOH A 11 511 511 HOH HOH . G 4 HOH A 12 512 512 HOH HOH . G 4 HOH A 13 513 513 HOH HOH . G 4 HOH A 14 516 516 HOH HOH . G 4 HOH A 15 518 518 HOH HOH . G 4 HOH A 16 519 519 HOH HOH . G 4 HOH A 17 523 523 HOH HOH . G 4 HOH A 18 525 525 HOH HOH . G 4 HOH A 19 526 526 HOH HOH . G 4 HOH A 20 530 530 HOH HOH . G 4 HOH A 21 531 531 HOH HOH . G 4 HOH A 22 532 532 HOH HOH . G 4 HOH A 23 533 533 HOH HOH . G 4 HOH A 24 534 534 HOH HOH . G 4 HOH A 25 535 535 HOH HOH . G 4 HOH A 26 538 538 HOH HOH . G 4 HOH A 27 562 562 HOH HOH . G 4 HOH A 28 563 563 HOH HOH . G 4 HOH A 29 564 564 HOH HOH . G 4 HOH A 30 566 566 HOH HOH . G 4 HOH A 31 567 567 HOH HOH . G 4 HOH A 32 571 571 HOH HOH . G 4 HOH A 33 572 572 HOH HOH . G 4 HOH A 34 574 574 HOH HOH . H 4 HOH B 1 510 510 HOH HOH . H 4 HOH B 2 514 514 HOH HOH . H 4 HOH B 3 515 515 HOH HOH . H 4 HOH B 4 517 517 HOH HOH . H 4 HOH B 5 520 520 HOH HOH . H 4 HOH B 6 521 521 HOH HOH . H 4 HOH B 7 522 522 HOH HOH . H 4 HOH B 8 524 524 HOH HOH . H 4 HOH B 9 527 527 HOH HOH . H 4 HOH B 10 528 528 HOH HOH . H 4 HOH B 11 529 529 HOH HOH . H 4 HOH B 12 536 536 HOH HOH . H 4 HOH B 13 537 537 HOH HOH . H 4 HOH B 14 539 539 HOH HOH . H 4 HOH B 15 540 540 HOH HOH . H 4 HOH B 16 541 541 HOH HOH . H 4 HOH B 17 542 542 HOH HOH . H 4 HOH B 18 543 543 HOH HOH . H 4 HOH B 19 544 544 HOH HOH . H 4 HOH B 20 545 545 HOH HOH . H 4 HOH B 21 546 546 HOH HOH . H 4 HOH B 22 547 547 HOH HOH . H 4 HOH B 23 548 548 HOH HOH . H 4 HOH B 24 549 549 HOH HOH . H 4 HOH B 25 550 550 HOH HOH . H 4 HOH B 26 551 551 HOH HOH . H 4 HOH B 27 552 552 HOH HOH . H 4 HOH B 28 553 553 HOH HOH . H 4 HOH B 29 554 554 HOH HOH . H 4 HOH B 30 555 555 HOH HOH . H 4 HOH B 31 556 556 HOH HOH . H 4 HOH B 32 557 557 HOH HOH . H 4 HOH B 33 558 558 HOH HOH . H 4 HOH B 34 559 559 HOH HOH . H 4 HOH B 35 560 560 HOH HOH . H 4 HOH B 36 561 561 HOH HOH . H 4 HOH B 37 565 565 HOH HOH . H 4 HOH B 38 568 568 HOH HOH . H 4 HOH B 39 569 569 HOH HOH . H 4 HOH B 40 570 570 HOH HOH . H 4 HOH B 41 573 573 HOH HOH . H 4 HOH B 42 575 575 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SER . . . D 3 15.596 -12.141 41.101 1 2 ? N SER 451 A 1 HETATM 2 C CA SER . . . D 3 16.031 -12.898 39.912 1 8.31 ? CA SER 451 A 1 HETATM 3 C C SER . . . D 3 16.255 -11.944 38.748 1 14.69 ? C SER 451 A 1 HETATM 4 O O SER . . . D 3 16.534 -12.417 37.632 1 20.86 ? O SER 451 A 1 HETATM 5 C CB SER . . . D 3 14.984 -13.952 39.544 1 3.52 ? CB SER 451 A 1 HETATM 6 O OG SER . . . D 3 14.818 -14.869 40.612 1 12.64 ? OG SER 451 A 1 HETATM 7 O OXT SER . . . D 3 16.138 -10.72 38.955 1 24.76 ? OXT SER 451 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #