data_1PSH # _model_server_result.job_id ddxcM5df9bka45R_bUeBUQ _model_server_result.datetime_utc '2024-11-02 07:24:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1psh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":120}' # _entry.id 1PSH # _exptl.entry_id 1PSH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PSH _cell.length_a 88.6 _cell.length_b 88.6 _cell.length_c 107.4 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PSH _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 71 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf2 A SG CYS 26 A CYS 26 1_555 A SG CYS 118 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 28 A CYS 28 1_555 A SG CYS 44 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf4 A SG CYS 43 A CYS 43 1_555 A SG CYS 99 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 A SG CYS 50 A CYS 50 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf6 A SG CYS 60 A CYS 60 1_555 A SG CYS 85 A CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf7 A SG CYS 78 A CYS 78 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf8 B SG CYS 11 B CYS 11 1_555 B SG CYS 71 B CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf9 B SG CYS 26 B CYS 26 1_555 B SG CYS 118 B CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf10 B SG CYS 28 B CYS 28 1_555 B SG CYS 44 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf11 B SG CYS 43 B CYS 43 1_555 B SG CYS 99 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf12 B SG CYS 50 B CYS 50 1_555 B SG CYS 92 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf13 B SG CYS 60 B CYS 60 1_555 B SG CYS 85 B CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf14 B SG CYS 78 B CYS 78 1_555 B SG CYS 90 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf15 C SG CYS 11 C CYS 11 1_555 C SG CYS 71 C CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf16 C SG CYS 26 C CYS 26 1_555 C SG CYS 118 C CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf17 C SG CYS 28 C CYS 28 1_555 C SG CYS 44 C CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? disulf ? disulf18 C SG CYS 43 C CYS 43 1_555 C SG CYS 99 C CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf19 C SG CYS 50 C CYS 50 1_555 C SG CYS 92 C CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf20 C SG CYS 60 C CYS 60 1_555 C SG CYS 85 C CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf21 C SG CYS 78 C CYS 78 1_555 C SG CYS 90 C CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 A O TYR 27 A TYR 27 1_555 D CA CA . A CA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc2 A O GLY 29 A GLY 29 1_555 D CA CA . A CA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc3 A O GLY 31 A GLY 31 1_555 D CA CA . A CA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc4 A OD2 ASP 48 A ASP 48 1_555 D CA CA . A CA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc5 A OD1 ASP 48 A ASP 48 1_555 D CA CA . A CA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc6 D CA CA . A CA 120 1_555 G O HOH . A HOH 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc7 D CA CA . A CA 120 1_555 G O HOH . A HOH 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? metalc ? metalc8 B O TYR 27 B TYR 27 1_555 E CA CA . B CA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.745 ? metalc ? metalc9 B O GLY 29 B GLY 29 1_555 E CA CA . B CA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc10 B O GLY 31 B GLY 31 1_555 E CA CA . B CA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc11 B OD2 ASP 48 B ASP 48 1_555 E CA CA . B CA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.727 ? metalc ? metalc12 B OD1 ASP 48 B ASP 48 1_555 E CA CA . B CA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc13 E CA CA . B CA 120 1_555 H O HOH . B HOH 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? metalc ? metalc14 C O TYR 27 C TYR 27 1_555 F CA CA . C CA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? metalc ? metalc15 C O GLY 29 C GLY 29 1_555 F CA CA . C CA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc16 C O GLY 31 C GLY 31 1_555 F CA CA . C CA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc17 C OD1 ASP 48 C ASP 48 1_555 F CA CA . C CA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc18 C OD2 ASP 48 C ASP 48 1_555 F CA CA . C CA 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc19 F CA CA . C CA 120 1_555 I O HOH . C HOH 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.581 ? metalc ? metalc20 F CA CA . C CA 120 1_555 I O HOH . C HOH 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1PSH _atom_sites.fract_transf_matrix[1][1] 0.011287 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CA A 1 120 1 CA CA . E 2 CA B 1 120 2 CA CA . F 2 CA C 1 120 3 CA CA . G 3 HOH A 1 121 2 HOH HOH . G 3 HOH A 2 122 3 HOH HOH . G 3 HOH A 3 123 5 HOH HOH . G 3 HOH A 4 124 10 HOH HOH . G 3 HOH A 5 125 12 HOH HOH . G 3 HOH A 6 126 13 HOH HOH . G 3 HOH A 7 127 19 HOH HOH . G 3 HOH A 8 128 20 HOH HOH . G 3 HOH A 9 129 21 HOH HOH . G 3 HOH A 10 130 22 HOH HOH . G 3 HOH A 11 131 23 HOH HOH . G 3 HOH A 12 132 24 HOH HOH . G 3 HOH A 13 133 25 HOH HOH . G 3 HOH A 14 134 26 HOH HOH . G 3 HOH A 15 135 31 HOH HOH . G 3 HOH A 16 136 33 HOH HOH . G 3 HOH A 17 137 35 HOH HOH . G 3 HOH A 18 138 38 HOH HOH . G 3 HOH A 19 139 39 HOH HOH . G 3 HOH A 20 140 40 HOH HOH . G 3 HOH A 21 141 42 HOH HOH . G 3 HOH A 22 142 43 HOH HOH . G 3 HOH A 23 143 44 HOH HOH . G 3 HOH A 24 144 46 HOH HOH . G 3 HOH A 25 145 47 HOH HOH . G 3 HOH A 26 146 52 HOH HOH . G 3 HOH A 27 147 53 HOH HOH . G 3 HOH A 28 148 54 HOH HOH . G 3 HOH A 29 149 56 HOH HOH . G 3 HOH A 30 150 57 HOH HOH . G 3 HOH A 31 151 66 HOH HOH . G 3 HOH A 32 152 68 HOH HOH . G 3 HOH A 33 153 71 HOH HOH . G 3 HOH A 34 154 73 HOH HOH . G 3 HOH A 35 155 77 HOH HOH . G 3 HOH A 36 156 78 HOH HOH . G 3 HOH A 37 157 81 HOH HOH . G 3 HOH A 38 158 88 HOH HOH . G 3 HOH A 39 159 90 HOH HOH . G 3 HOH A 40 160 91 HOH HOH . G 3 HOH A 41 161 96 HOH HOH . G 3 HOH A 42 162 97 HOH HOH . G 3 HOH A 43 163 98 HOH HOH . G 3 HOH A 44 164 99 HOH HOH . G 3 HOH A 45 165 101 HOH HOH . G 3 HOH A 46 166 102 HOH HOH . G 3 HOH A 47 167 107 HOH HOH . G 3 HOH A 48 168 108 HOH HOH . G 3 HOH A 49 169 113 HOH HOH . G 3 HOH A 50 170 117 HOH HOH . G 3 HOH A 51 171 121 HOH HOH . G 3 HOH A 52 172 124 HOH HOH . G 3 HOH A 53 173 127 HOH HOH . G 3 HOH A 54 174 132 HOH HOH . G 3 HOH A 55 175 133 HOH HOH . G 3 HOH A 56 176 139 HOH HOH . G 3 HOH A 57 177 141 HOH HOH . G 3 HOH A 58 178 142 HOH HOH . G 3 HOH A 59 179 147 HOH HOH . H 3 HOH B 1 121 6 HOH HOH . H 3 HOH B 2 122 16 HOH HOH . H 3 HOH B 3 123 17 HOH HOH . H 3 HOH B 4 124 29 HOH HOH . H 3 HOH B 5 125 51 HOH HOH . H 3 HOH B 6 126 58 HOH HOH . H 3 HOH B 7 127 59 HOH HOH . H 3 HOH B 8 128 63 HOH HOH . H 3 HOH B 9 129 65 HOH HOH . H 3 HOH B 10 130 72 HOH HOH . H 3 HOH B 11 131 74 HOH HOH . H 3 HOH B 12 132 79 HOH HOH . H 3 HOH B 13 133 82 HOH HOH . H 3 HOH B 14 134 83 HOH HOH . H 3 HOH B 15 135 84 HOH HOH . H 3 HOH B 16 136 85 HOH HOH . H 3 HOH B 17 137 86 HOH HOH . H 3 HOH B 18 138 87 HOH HOH . H 3 HOH B 19 139 89 HOH HOH . H 3 HOH B 20 140 93 HOH HOH . H 3 HOH B 21 141 103 HOH HOH . H 3 HOH B 22 142 106 HOH HOH . H 3 HOH B 23 143 118 HOH HOH . H 3 HOH B 24 144 119 HOH HOH . H 3 HOH B 25 145 120 HOH HOH . H 3 HOH B 26 146 122 HOH HOH . H 3 HOH B 27 147 129 HOH HOH . H 3 HOH B 28 148 130 HOH HOH . H 3 HOH B 29 149 138 HOH HOH . H 3 HOH B 30 150 143 HOH HOH . H 3 HOH B 31 151 145 HOH HOH . H 3 HOH B 32 152 148 HOH HOH . I 3 HOH C 1 121 1 HOH HOH . I 3 HOH C 2 122 4 HOH HOH . I 3 HOH C 3 123 7 HOH HOH . I 3 HOH C 4 124 8 HOH HOH . I 3 HOH C 5 125 9 HOH HOH . I 3 HOH C 6 126 11 HOH HOH . I 3 HOH C 7 127 14 HOH HOH . I 3 HOH C 8 128 15 HOH HOH . I 3 HOH C 9 129 18 HOH HOH . I 3 HOH C 10 130 27 HOH HOH . I 3 HOH C 11 131 28 HOH HOH . I 3 HOH C 12 132 30 HOH HOH . I 3 HOH C 13 133 32 HOH HOH . I 3 HOH C 14 134 34 HOH HOH . I 3 HOH C 15 135 36 HOH HOH . I 3 HOH C 16 136 37 HOH HOH . I 3 HOH C 17 137 41 HOH HOH . I 3 HOH C 18 138 45 HOH HOH . I 3 HOH C 19 139 48 HOH HOH . I 3 HOH C 20 140 49 HOH HOH . I 3 HOH C 21 141 50 HOH HOH . I 3 HOH C 22 142 55 HOH HOH . I 3 HOH C 23 143 60 HOH HOH . I 3 HOH C 24 144 61 HOH HOH . I 3 HOH C 25 145 62 HOH HOH . I 3 HOH C 26 146 64 HOH HOH . I 3 HOH C 27 147 67 HOH HOH . I 3 HOH C 28 148 69 HOH HOH . I 3 HOH C 29 149 70 HOH HOH . I 3 HOH C 30 150 75 HOH HOH . I 3 HOH C 31 151 76 HOH HOH . I 3 HOH C 32 152 80 HOH HOH . I 3 HOH C 33 153 92 HOH HOH . I 3 HOH C 34 154 94 HOH HOH . I 3 HOH C 35 155 95 HOH HOH . I 3 HOH C 36 156 100 HOH HOH . I 3 HOH C 37 157 104 HOH HOH . I 3 HOH C 38 158 105 HOH HOH . I 3 HOH C 39 159 109 HOH HOH . I 3 HOH C 40 160 110 HOH HOH . I 3 HOH C 41 161 111 HOH HOH . I 3 HOH C 42 162 112 HOH HOH . I 3 HOH C 43 163 114 HOH HOH . I 3 HOH C 44 164 115 HOH HOH . I 3 HOH C 45 165 116 HOH HOH . I 3 HOH C 46 166 123 HOH HOH . I 3 HOH C 47 167 125 HOH HOH . I 3 HOH C 48 168 126 HOH HOH . I 3 HOH C 49 169 128 HOH HOH . I 3 HOH C 50 170 131 HOH HOH . I 3 HOH C 51 171 134 HOH HOH . I 3 HOH C 52 172 135 HOH HOH . I 3 HOH C 53 173 136 HOH HOH . I 3 HOH C 54 174 137 HOH HOH . I 3 HOH C 55 175 140 HOH HOH . I 3 HOH C 56 176 144 HOH HOH . I 3 HOH C 57 177 146 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 24.558 _atom_site.Cartn_y 35.24 _atom_site.Cartn_z 28.535 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.89 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 120 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #