data_1PSS # _model_server_result.job_id dJuDfEcvRa6UJj2uNr_XnA _model_server_result.datetime_utc '2025-02-27 01:53:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pss # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":272}' # _entry.id 1PSS # _exptl.entry_id 1PSS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 863.343 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PSS _cell.length_a 138 _cell.length_b 77.5 _cell.length_c 141.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PSS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG BCL . L BCL 2 1_555 A NE2 HIS 169 L HIS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc2 A NE2 HIS 149 L HIS 153 1_555 J MG BCL . M BCL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc3 A NE2 HIS 186 L HIS 190 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc4 A NE2 HIS 226 L HIS 230 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc5 H MG BCL . M BCL 1 1_555 B NE2 HIS 177 M HIS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc6 I MG BCL . M BCL 3 1_555 B NE2 HIS 197 M HIS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc7 B NE2 HIS 214 M HIS 219 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc8 B OE1 GLU 229 M GLU 234 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc9 B OE2 GLU 229 M GLU 234 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc10 B NE2 HIS 261 M HIS 266 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 U10 sing 753 n n C1 C6 U10 doub 754 n n C1 C1M U10 sing 755 n n C2 C3 U10 sing 756 n n C2 O2 U10 doub 757 n n C3 C4 U10 doub 758 n n C3 O3 U10 sing 759 n n C4 C5 U10 sing 760 n n C4 O4 U10 sing 761 n n C5 C6 U10 sing 762 n n C5 O5 U10 doub 763 n n C6 C7 U10 sing 764 n n C1M H1M1 U10 sing 765 n n C1M H1M2 U10 sing 766 n n C1M H1M3 U10 sing 767 n n C3M O3 U10 sing 768 n n C3M H3M1 U10 sing 769 n n C3M H3M2 U10 sing 770 n n C3M H3M3 U10 sing 771 n n C4M O4 U10 sing 772 n n C4M H4M1 U10 sing 773 n n C4M H4M2 U10 sing 774 n n C4M H4M3 U10 sing 775 n n C7 C8 U10 sing 776 n n C7 H71 U10 sing 777 n n C7 H72 U10 sing 778 n n C8 C9 U10 doub 779 e n C8 H8 U10 sing 780 n n C9 C10 U10 sing 781 n n C9 C11 U10 sing 782 n n C10 H101 U10 sing 783 n n C10 H102 U10 sing 784 n n C10 H103 U10 sing 785 n n C11 C12 U10 sing 786 n n C11 H111 U10 sing 787 n n C11 H112 U10 sing 788 n n C12 C13 U10 sing 789 n n C12 H121 U10 sing 790 n n C12 H122 U10 sing 791 n n C13 C14 U10 doub 792 e n C13 H13 U10 sing 793 n n C14 C15 U10 sing 794 n n C14 C16 U10 sing 795 n n C15 H151 U10 sing 796 n n C15 H152 U10 sing 797 n n C15 H153 U10 sing 798 n n C16 C17 U10 sing 799 n n C16 H161 U10 sing 800 n n C16 H162 U10 sing 801 n n C17 C18 U10 sing 802 n n C17 H171 U10 sing 803 n n C17 H172 U10 sing 804 n n C18 C19 U10 doub 805 e n C18 H18 U10 sing 806 n n C19 C20 U10 sing 807 n n C19 C21 U10 sing 808 n n C20 H201 U10 sing 809 n n C20 H202 U10 sing 810 n n C20 H203 U10 sing 811 n n C21 C22 U10 sing 812 n n C21 H211 U10 sing 813 n n C21 H212 U10 sing 814 n n C22 C23 U10 sing 815 n n C22 H221 U10 sing 816 n n C22 H222 U10 sing 817 n n C23 C24 U10 doub 818 e n C23 H23 U10 sing 819 n n C24 C25 U10 sing 820 n n C24 C26 U10 sing 821 n n C25 H251 U10 sing 822 n n C25 H252 U10 sing 823 n n C25 H253 U10 sing 824 n n C26 C27 U10 sing 825 n n C26 H261 U10 sing 826 n n C26 H262 U10 sing 827 n n C27 C28 U10 sing 828 n n C27 H271 U10 sing 829 n n C27 H272 U10 sing 830 n n C28 C29 U10 doub 831 e n C28 H28 U10 sing 832 n n C29 C30 U10 sing 833 n n C29 C31 U10 sing 834 n n C30 H301 U10 sing 835 n n C30 H302 U10 sing 836 n n C30 H303 U10 sing 837 n n C31 C32 U10 sing 838 n n C31 H311 U10 sing 839 n n C31 H312 U10 sing 840 n n C32 C33 U10 sing 841 n n C32 H321 U10 sing 842 n n C32 H322 U10 sing 843 n n C33 C34 U10 doub 844 e n C33 H33 U10 sing 845 n n C34 C35 U10 sing 846 n n C34 C36 U10 sing 847 n n C35 H351 U10 sing 848 n n C35 H352 U10 sing 849 n n C35 H353 U10 sing 850 n n C36 C37 U10 sing 851 n n C36 H361 U10 sing 852 n n C36 H362 U10 sing 853 n n C37 C38 U10 sing 854 n n C37 H371 U10 sing 855 n n C37 H372 U10 sing 856 n n C38 C39 U10 doub 857 e n C38 H38 U10 sing 858 n n C39 C40 U10 sing 859 n n C39 C41 U10 sing 860 n n C40 H401 U10 sing 861 n n C40 H402 U10 sing 862 n n C40 H403 U10 sing 863 n n C41 C42 U10 sing 864 n n C41 H411 U10 sing 865 n n C41 H412 U10 sing 866 n n C42 C43 U10 sing 867 n n C42 H421 U10 sing 868 n n C42 H422 U10 sing 869 n n C43 C44 U10 doub 870 e n C43 H43 U10 sing 871 n n C44 C45 U10 sing 872 n n C44 C46 U10 sing 873 n n C45 H451 U10 sing 874 n n C45 H452 U10 sing 875 n n C45 H453 U10 sing 876 n n C46 C47 U10 sing 877 n n C46 H461 U10 sing 878 n n C46 H462 U10 sing 879 n n C47 C48 U10 sing 880 n n C47 H471 U10 sing 881 n n C47 H472 U10 sing 882 n n C48 C49 U10 doub 883 e n C48 H48 U10 sing 884 n n C49 C50 U10 sing 885 n n C49 C51 U10 sing 886 n n C50 H501 U10 sing 887 n n C50 H502 U10 sing 888 n n C50 H503 U10 sing 889 n n C51 C52 U10 sing 890 n n C51 H511 U10 sing 891 n n C51 H512 U10 sing 892 n n C52 C53 U10 sing 893 n n C52 H521 U10 sing 894 n n C52 H522 U10 sing 895 n n C53 C54 U10 doub 896 n n C53 H53 U10 sing 897 n n C54 C55 U10 sing 898 n n C54 C56 U10 sing 899 n n C55 H551 U10 sing 900 n n C55 H552 U10 sing 901 n n C55 H553 U10 sing 902 n n C56 H561 U10 sing 903 n n C56 H562 U10 sing 904 n n C56 H563 U10 sing 905 n n # _atom_sites.entry_id 1PSS _atom_sites.fract_transf_matrix[1][1] 0.007246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 2 2 BCL BCL . E 5 BPH L 1 271 6 BPH BPH . F 6 U10 L 1 272 9 U10 U10 . G 7 FE M 1 302 7 FE FE . H 4 BCL M 1 1 1 BCL BCL . I 4 BCL M 1 3 3 BCL BCL . J 4 BCL M 1 4 4 BCL BCL . K 5 BPH M 1 5 5 BPH BPH . L 6 U10 M 1 303 8 U10 U10 . M 8 CRT M 1 304 10 CRT CRT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . F 6 42.297 36.022 70.414 1 54.33 ? C1 U10 272 L 1 HETATM 2 C C2 U10 . . . F 6 41.99 34.733 70.89 1 55.6 ? C2 U10 272 L 1 HETATM 3 C C3 U10 . . . F 6 41.695 34.511 72.246 1 53.26 ? C3 U10 272 L 1 HETATM 4 C C4 U10 . . . F 6 41.7 35.603 73.125 1 51.98 ? C4 U10 272 L 1 HETATM 5 C C5 U10 . . . F 6 42.008 36.911 72.656 1 53.96 ? C5 U10 272 L 1 HETATM 6 C C6 U10 . . . F 6 42.31 37.125 71.279 1 54.1 ? C6 U10 272 L 1 HETATM 7 C C1M U10 . . . F 6 42.62 36.263 68.945 1 53.14 ? C1M U10 272 L 1 HETATM 8 C C3M U10 . . . F 6 40.4 32.398 72.304 1 46.81 ? C3M U10 272 L 1 HETATM 9 C C4M U10 . . . F 6 40.048 35.029 74.827 1 45.59 ? C4M U10 272 L 1 HETATM 10 C C7 U10 . . . F 6 42.682 38.43 70.544 1 51.41 ? C7 U10 272 L 1 HETATM 11 C C8 U10 . . . F 6 42.493 39.717 71.166 1 49.81 ? C8 U10 272 L 1 HETATM 12 C C9 U10 . . . F 6 42.095 40.799 70.392 1 49.67 ? C9 U10 272 L 1 HETATM 13 C C10 U10 . . . F 6 41.967 42.135 71.113 1 47.78 ? C10 U10 272 L 1 HETATM 14 C C11 U10 . . . F 6 41.738 40.664 68.886 1 45.46 ? C11 U10 272 L 1 HETATM 15 C C12 U10 . . . F 6 42.619 41.35 67.827 1 36.94 ? C12 U10 272 L 1 HETATM 16 C C13 U10 . . . F 6 42.142 42.705 67.624 1 36.89 ? C13 U10 272 L 1 HETATM 17 C C14 U10 . . . F 6 42.954 43.837 67.727 1 43.59 ? C14 U10 272 L 1 HETATM 18 C C15 U10 . . . F 6 42.29 45.205 67.535 1 40.18 ? C15 U10 272 L 1 HETATM 19 C C16 U10 . . . F 6 44.463 43.744 68.052 1 42.35 ? C16 U10 272 L 1 HETATM 20 C C17 U10 . . . F 6 45.222 45.054 68.414 1 43.62 ? C17 U10 272 L 1 HETATM 21 C C18 U10 . . . F 6 45.191 45.329 69.874 1 46.05 ? C18 U10 272 L 1 HETATM 22 C C19 U10 . . . F 6 46.033 46.205 70.575 1 45.66 ? C19 U10 272 L 1 HETATM 23 C C20 U10 . . . F 6 45.803 46.408 72.081 1 45.53 ? C20 U10 272 L 1 HETATM 24 C C21 U10 . . . F 6 47.124 47.019 69.872 1 45.32 ? C21 U10 272 L 1 HETATM 25 C C22 U10 . . . F 6 48.39 47.299 70.684 1 42.8 ? C22 U10 272 L 1 HETATM 26 C C23 U10 . . . F 6 49.558 47.243 69.808 1 38.88 ? C23 U10 272 L 1 HETATM 27 C C24 U10 . . . F 6 50.826 47.709 70.128 1 37.45 ? C24 U10 272 L 1 HETATM 28 C C25 U10 . . . F 6 51.918 47.545 69.08 1 32.98 ? C25 U10 272 L 1 HETATM 29 C C26 U10 . . . F 6 51.169 48.34 71.48 1 40.45 ? C26 U10 272 L 1 HETATM 30 C C27 U10 . . . F 6 51.325 47.287 72.593 1 44.38 ? C27 U10 272 L 1 HETATM 31 C C28 U10 . . . F 6 52.004 47.773 73.787 1 45.12 ? C28 U10 272 L 1 HETATM 32 C C29 U10 . . . F 6 51.35 48.387 74.847 1 49.13 ? C29 U10 272 L 1 HETATM 33 C C30 U10 . . . F 6 52.182 48.772 76.068 1 45.84 ? C30 U10 272 L 1 HETATM 34 C C31 U10 . . . F 6 49.827 48.627 74.826 1 52.82 ? C31 U10 272 L 1 HETATM 35 C C32 U10 . . . F 6 49.214 49.445 75.989 1 54.62 ? C32 U10 272 L 1 HETATM 36 C C33 U10 . . . F 6 47.746 49.455 75.893 1 55.01 ? C33 U10 272 L 1 HETATM 37 C C34 U10 . . . F 6 46.949 48.31 76.343 1 53.7 ? C34 U10 272 L 1 HETATM 38 O O2 U10 . . . F 6 42.01 33.784 70.102 1 56.12 ? O2 U10 272 L 1 HETATM 39 O O3 U10 . . . F 6 41.481 33.216 72.743 1 49.34 ? O3 U10 272 L 1 HETATM 40 O O4 U10 . . . F 6 41.38 35.363 74.456 1 52.65 ? O4 U10 272 L 1 HETATM 41 O O5 U10 . . . F 6 42.031 37.862 73.45 1 51.58 ? O5 U10 272 L 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #