data_1PSS
#
_model_server_result.job_id            m5AKrmy2YD0Qpaq6RGtQMw 
_model_server_result.datetime_utc      '2025-02-27 01:23:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1pss 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":304}' 
#
_entry.id    1PSS 
#
_exptl.entry_id    1PSS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              596.925 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPIRILLOXANTHIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1PSS 
_cell.length_a            138 
_cell.length_b            77.5 
_cell.length_c            141.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1PSS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D MG BCL . L BCL 2 1_555 A NE2 HIS 169 L HIS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc2 A NE2 HIS 149 L HIS 153 1_555 J MG BCL . M BCL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? 
metalc ? metalc3 A NE2 HIS 186 L HIS 190 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc4 A NE2 HIS 226 L HIS 230 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc5 H MG BCL . M BCL 1 1_555 B NE2 HIS 177 M HIS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc6 I MG BCL . M BCL 3 1_555 B NE2 HIS 197 M HIS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc7 B NE2 HIS 214 M HIS 219 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc8 B OE1 GLU 229 M GLU 234 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc9 B OE2 GLU 229 M GLU 234 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc10 B NE2 HIS 261 M HIS 266 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
#
_chem_comp.formula           'C42 H60 O2' 
_chem_comp.formula_weight    596.925 
_chem_comp.id                CRT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPIRILLOXANTHIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     RHODOVIOLASCIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1M O1 CRT sing 364 n n 
C1M H1M1 CRT sing 365 n n 
C1M H1M2 CRT sing 366 n n 
C1M H1M3 CRT sing 367 n n 
O1 C1 CRT sing 368 n n 
C1 C2 CRT sing 369 n n 
C1 C3 CRT sing 370 n n 
C1 C4 CRT sing 371 n n 
C2 H21A CRT sing 372 n n 
C2 H22A CRT sing 373 n n 
C2 H23 CRT sing 374 n n 
C3 H31A CRT sing 375 n n 
C3 H32A CRT sing 376 n n 
C3 H33 CRT sing 377 n n 
C4 C5 CRT sing 378 n n 
C4 H41 CRT sing 379 n n 
C4 H42 CRT sing 380 n n 
C5 C6 CRT doub 381 e n 
C5 H5 CRT sing 382 n n 
C6 C7 CRT sing 383 n n 
C6 H6 CRT sing 384 n n 
C7 C8 CRT sing 385 n n 
C7 C9 CRT doub 386 e n 
C8 H81 CRT sing 387 n n 
C8 H82 CRT sing 388 n n 
C8 H83 CRT sing 389 n n 
C9 C10 CRT sing 390 n n 
C9 H9 CRT sing 391 n n 
C10 C11 CRT doub 392 e n 
C10 H10 CRT sing 393 n n 
C11 C12 CRT sing 394 n n 
C11 H11 CRT sing 395 n n 
C12 C13 CRT sing 396 n n 
C12 C14 CRT doub 397 e n 
C13 H131 CRT sing 398 n n 
C13 H132 CRT sing 399 n n 
C13 H133 CRT sing 400 n n 
C14 C15 CRT sing 401 n n 
C14 H14 CRT sing 402 n n 
C15 C16 CRT doub 403 e n 
C15 H15 CRT sing 404 n n 
C16 C17 CRT sing 405 n n 
C16 H16 CRT sing 406 n n 
C17 C18 CRT sing 407 n n 
C17 C19 CRT doub 408 e n 
C18 H181 CRT sing 409 n n 
C18 H182 CRT sing 410 n n 
C18 H183 CRT sing 411 n n 
C19 C20 CRT sing 412 n n 
C19 H19 CRT sing 413 n n 
C20 C21 CRT doub 414 z n 
C20 H20 CRT sing 415 n n 
C21 C22 CRT sing 416 n n 
C21 H21 CRT sing 417 n n 
C22 C23 CRT doub 418 e n 
C22 H22 CRT sing 419 n n 
C23 C24 CRT sing 420 n n 
C23 C25 CRT sing 421 n n 
C24 H241 CRT sing 422 n n 
C24 H242 CRT sing 423 n n 
C24 H243 CRT sing 424 n n 
C25 C26 CRT doub 425 e n 
C25 H25 CRT sing 426 n n 
C26 C27 CRT sing 427 n n 
C26 H26 CRT sing 428 n n 
C27 C28 CRT doub 429 e n 
C27 H27 CRT sing 430 n n 
C28 C29 CRT sing 431 n n 
C28 C30 CRT sing 432 n n 
C29 H291 CRT sing 433 n n 
C29 H292 CRT sing 434 n n 
C29 H293 CRT sing 435 n n 
C30 C31 CRT doub 436 e n 
C30 H30 CRT sing 437 n n 
C31 C32 CRT sing 438 n n 
C31 H31 CRT sing 439 n n 
C32 C33 CRT doub 440 e n 
C32 H32 CRT sing 441 n n 
C33 C34 CRT sing 442 n n 
C33 C35 CRT sing 443 n n 
C34 H341 CRT sing 444 n n 
C34 H342 CRT sing 445 n n 
C34 H343 CRT sing 446 n n 
C35 C36 CRT doub 447 e n 
C35 H35 CRT sing 448 n n 
C36 C37 CRT sing 449 n n 
C36 H36 CRT sing 450 n n 
C37 C38 CRT sing 451 n n 
C37 H371 CRT sing 452 n n 
C37 H372 CRT sing 453 n n 
C38 C39 CRT sing 454 n n 
C38 C40 CRT sing 455 n n 
C38 O2 CRT sing 456 n n 
C39 H391 CRT sing 457 n n 
C39 H392 CRT sing 458 n n 
C39 H393 CRT sing 459 n n 
C40 H401 CRT sing 460 n n 
C40 H402 CRT sing 461 n n 
C40 H403 CRT sing 462 n n 
O2 C2M CRT sing 463 n n 
C2M H2M1 CRT sing 464 n n 
C2M H2M2 CRT sing 465 n n 
C2M H2M3 CRT sing 466 n n 
#
_atom_sites.entry_id                     1PSS 
_atom_sites.fract_transf_matrix[1][1]    0.007246 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012903 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007052 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 BCL L 1 2 2 BCL BCL . 
E 5 BPH L 1 271 6 BPH BPH . 
F 6 U10 L 1 272 9 U10 U10 . 
G 7 FE M 1 302 7 FE FE . 
H 4 BCL M 1 1 1 BCL BCL . 
I 4 BCL M 1 3 3 BCL BCL . 
J 4 BCL M 1 4 4 BCL BCL . 
K 5 BPH M 1 5 5 BPH BPH . 
L 6 U10 M 1 303 8 U10 U10 . 
M 8 CRT M 1 304 10 CRT CRT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1M CRT . . . M 8 56.249 65.05 66.062 1 33.87 ? C1M CRT 304 M 1 
HETATM 2 O O1 CRT . . . M 8 55.396 63.957 65.985 1 33.12 ? O1 CRT 304 M 1 
HETATM 3 C C1 CRT . . . M 8 54.119 63.921 66.635 1 31.43 ? C1 CRT 304 M 1 
HETATM 4 C C2 CRT . . . M 8 53.163 65.081 66.216 1 24.87 ? C2 CRT 304 M 1 
HETATM 5 C C3 CRT . . . M 8 54.332 63.956 68.166 1 31 ? C3 CRT 304 M 1 
HETATM 6 C C4 CRT . . . M 8 53.469 62.588 66.266 1 33.23 ? C4 CRT 304 M 1 
HETATM 7 C C5 CRT . . . M 8 53.015 62.442 64.789 1 35.35 ? C5 CRT 304 M 1 
HETATM 8 C C6 CRT . . . M 8 53.284 61.151 63.988 1 35.88 ? C6 CRT 304 M 1 
HETATM 9 C C7 CRT . . . M 8 52.707 60.9 62.767 1 33.34 ? C7 CRT 304 M 1 
HETATM 10 C C8 CRT . . . M 8 51.758 61.95 62.135 1 27.71 ? C8 CRT 304 M 1 
HETATM 11 C C9 CRT . . . M 8 52.971 59.657 62.208 1 30.19 ? C9 CRT 304 M 1 
HETATM 12 C C10 CRT . . . M 8 52.327 59.262 60.873 1 28.4 ? C10 CRT 304 M 1 
HETATM 13 C C11 CRT . . . M 8 52.354 57.907 60.135 1 20.93 ? C11 CRT 304 M 1 
HETATM 14 C C12 CRT . . . M 8 51.738 57.896 58.9 1 21.16 ? C12 CRT 304 M 1 
HETATM 15 C C13 CRT . . . M 8 51.178 59.191 58.269 1 22.63 ? C13 CRT 304 M 1 
HETATM 16 C C14 CRT . . . M 8 51.63 56.769 58.122 1 19.92 ? C14 CRT 304 M 1 
HETATM 17 C C15 CRT . . . M 8 52.064 55.35 58.459 1 21.21 ? C15 CRT 304 M 1 
HETATM 18 C C16 CRT . . . M 8 52.3 54.32 57.327 1 20.52 ? C16 CRT 304 M 1 
HETATM 19 C C17 CRT . . . M 8 51.387 53.916 56.365 1 19.94 ? C17 CRT 304 M 1 
HETATM 20 C C18 CRT . . . M 8 49.975 54.526 56.215 1 15.92 ? C18 CRT 304 M 1 
HETATM 21 C C19 CRT . . . M 8 51.809 52.972 55.451 1 19.83 ? C19 CRT 304 M 1 
HETATM 22 C C20 CRT . . . M 8 53.213 52.355 55.541 1 19.12 ? C20 CRT 304 M 1 
HETATM 23 C C21 CRT . . . M 8 53.98 51.839 54.322 1 15.54 ? C21 CRT 304 M 1 
HETATM 24 C C22 CRT . . . M 8 53.99 50.383 53.876 1 11.75 ? C22 CRT 304 M 1 
HETATM 25 C C23 CRT . . . M 8 55.059 49.519 53.978 1 14.07 ? C23 CRT 304 M 1 
HETATM 26 C C24 CRT . . . M 8 55.064 48.325 53.019 1 20.85 ? C24 CRT 304 M 1 
HETATM 27 C C25 CRT . . . M 8 56.243 49.848 54.601 1 13.99 ? C25 CRT 304 M 1 
HETATM 28 C C26 CRT . . . M 8 57.356 48.76 54.718 1 12.98 ? C26 CRT 304 M 1 
HETATM 29 C C27 CRT . . . M 8 58.757 49.104 55.218 1 10.56 ? C27 CRT 304 M 1 
HETATM 30 C C28 CRT . . . M 8 59.816 48.237 55.171 1 9.39 ? C28 CRT 304 M 1 
HETATM 31 C C29 CRT . . . M 8 59.618 46.709 55.157 1 12.41 ? C29 CRT 304 M 1 
HETATM 32 C C30 CRT . . . M 8 61.023 48.797 55.492 1 9.34 ? C30 CRT 304 M 1 
HETATM 33 C C31 CRT . . . M 8 62.349 48.053 55.304 1 13.04 ? C31 CRT 304 M 1 
HETATM 34 C C32 CRT . . . M 8 63.695 48.675 55.769 1 23.1 ? C32 CRT 304 M 1 
HETATM 35 C C33 CRT . . . M 8 64.281 49.811 55.252 1 20.67 ? C33 CRT 304 M 1 
HETATM 36 C C34 CRT . . . M 8 64.025 50.336 53.831 1 16.71 ? C34 CRT 304 M 1 
HETATM 37 C C35 CRT . . . M 8 65.597 50.379 55.814 1 24.66 ? C35 CRT 304 M 1 
HETATM 38 C C36 CRT . . . M 8 66.901 49.773 55.271 1 25.94 ? C36 CRT 304 M 1 
HETATM 39 C C37 CRT . . . M 8 67.102 48.283 55.637 1 30.64 ? C37 CRT 304 M 1 
HETATM 40 C C38 CRT . . . M 8 67.63 47.649 56.733 1 33.22 ? C38 CRT 304 M 1 
HETATM 41 C C39 CRT . . . M 8 68.799 48.244 57.539 1 34.88 ? C39 CRT 304 M 1 
HETATM 42 C C40 CRT . . . M 8 67.656 46.118 56.873 1 32.85 ? C40 CRT 304 M 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           430 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           42 
#