data_1PSS # _model_server_result.job_id 7u_zGaTmgNWRIdKR5jGA-w _model_server_result.datetime_utc '2025-02-27 01:40:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pss # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":4}' # _entry.id 1PSS # _exptl.entry_id 1PSS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 911.504 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOCHLOROPHYLL A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PSS _cell.length_a 138 _cell.length_b 77.5 _cell.length_c 141.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PSS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG BCL . L BCL 2 1_555 A NE2 HIS 169 L HIS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc2 A NE2 HIS 149 L HIS 153 1_555 J MG BCL . M BCL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc3 A NE2 HIS 186 L HIS 190 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc4 A NE2 HIS 226 L HIS 230 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc5 H MG BCL . M BCL 1 1_555 B NE2 HIS 177 M HIS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc6 I MG BCL . M BCL 3 1_555 B NE2 HIS 197 M HIS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc7 B NE2 HIS 214 M HIS 219 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc8 B OE1 GLU 229 M GLU 234 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc9 B OE2 GLU 229 M GLU 234 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc10 B NE2 HIS 261 M HIS 266 1_555 G FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? # _chem_comp.formula 'C55 H74 Mg N4 O6' _chem_comp.formula_weight 911.504 _chem_comp.id BCL _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOCHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA BCL sing 70 n n MG NB BCL sing 71 n n MG NC BCL sing 72 n n MG ND BCL sing 73 n n CHA C1A BCL sing 74 n n CHA C4D BCL doub 75 n n CHA CBD BCL sing 76 n n CHB C4A BCL doub 77 n n CHB C1B BCL sing 78 n n CHB HHB BCL sing 79 n n CHC C4B BCL sing 80 n n CHC C1C BCL doub 81 n n CHC HHC BCL sing 82 n n CHD C4C BCL sing 83 n n CHD C1D BCL doub 84 n n CHD HHD BCL sing 85 n n NA C1A BCL doub 86 n n NA C4A BCL sing 87 n n C1A C2A BCL sing 88 n n C2A C3A BCL sing 89 n n C2A CAA BCL sing 90 n n C2A H2A BCL sing 91 n n C3A C4A BCL sing 92 n n C3A CMA BCL sing 93 n n C3A H3A BCL sing 94 n n CMA HMA1 BCL sing 95 n n CMA HMA2 BCL sing 96 n n CMA HMA3 BCL sing 97 n n CAA CBA BCL sing 98 n n CAA HAA1 BCL sing 99 n n CAA HAA2 BCL sing 100 n n CBA CGA BCL sing 101 n n CBA HBA1 BCL sing 102 n n CBA HBA2 BCL sing 103 n n CGA O1A BCL doub 104 n n CGA O2A BCL sing 105 n n O2A C1 BCL sing 106 n n NB C1B BCL sing 107 n y NB C4B BCL sing 108 n y C1B C2B BCL doub 109 n y C2B C3B BCL sing 110 n y C2B CMB BCL sing 111 n n C3B C4B BCL doub 112 n y C3B CAB BCL sing 113 n n CMB HMB1 BCL sing 114 n n CMB HMB2 BCL sing 115 n n CMB HMB3 BCL sing 116 n n CAB OBB BCL doub 117 n n CAB CBB BCL sing 118 n n CBB HBB1 BCL sing 119 n n CBB HBB2 BCL sing 120 n n CBB HBB3 BCL sing 121 n n NC C1C BCL sing 122 n n NC C4C BCL doub 123 n n C1C C2C BCL sing 124 n n C2C C3C BCL sing 125 n n C2C CMC BCL sing 126 n n C2C H2C BCL sing 127 n n C3C C4C BCL sing 128 n n C3C CAC BCL sing 129 n n C3C H3C BCL sing 130 n n CMC HMC1 BCL sing 131 n n CMC HMC2 BCL sing 132 n n CMC HMC3 BCL sing 133 n n CAC CBC BCL sing 134 n n CAC HAC1 BCL sing 135 n n CAC HAC2 BCL sing 136 n n CBC HBC1 BCL sing 137 n n CBC HBC2 BCL sing 138 n n CBC HBC3 BCL sing 139 n n ND C1D BCL sing 140 n n ND C4D BCL sing 141 n n C1D C2D BCL sing 142 n n C2D C3D BCL doub 143 n n C2D CMD BCL sing 144 n n C3D C4D BCL sing 145 n n C3D CAD BCL sing 146 n n CMD HMD1 BCL sing 147 n n CMD HMD2 BCL sing 148 n n CMD HMD3 BCL sing 149 n n CAD OBD BCL doub 150 n n CAD CBD BCL sing 151 n n CBD CGD BCL sing 152 n n CBD HBD BCL sing 153 n n CGD O1D BCL doub 154 n n CGD O2D BCL sing 155 n n O2D CED BCL sing 156 n n CED HED1 BCL sing 157 n n CED HED2 BCL sing 158 n n CED HED3 BCL sing 159 n n C1 C2 BCL sing 160 n n C1 H11 BCL sing 161 n n C1 H12 BCL sing 162 n n C2 C3 BCL doub 163 e n C2 H2 BCL sing 164 n n C3 C4 BCL sing 165 n n C3 C5 BCL sing 166 n n C4 H41 BCL sing 167 n n C4 H42 BCL sing 168 n n C4 H43 BCL sing 169 n n C5 C6 BCL sing 170 n n C5 H51 BCL sing 171 n n C5 H52 BCL sing 172 n n C6 C7 BCL sing 173 n n C6 H61 BCL sing 174 n n C6 H62 BCL sing 175 n n C7 C8 BCL sing 176 n n C7 H71 BCL sing 177 n n C7 H72 BCL sing 178 n n C8 C9 BCL sing 179 n n C8 C10 BCL sing 180 n n C8 H8 BCL sing 181 n n C9 H91 BCL sing 182 n n C9 H92 BCL sing 183 n n C9 H93 BCL sing 184 n n C10 C11 BCL sing 185 n n C10 H101 BCL sing 186 n n C10 H102 BCL sing 187 n n C11 C12 BCL sing 188 n n C11 H111 BCL sing 189 n n C11 H112 BCL sing 190 n n C12 C13 BCL sing 191 n n C12 H121 BCL sing 192 n n C12 H122 BCL sing 193 n n C13 C14 BCL sing 194 n n C13 C15 BCL sing 195 n n C13 H13 BCL sing 196 n n C14 H141 BCL sing 197 n n C14 H142 BCL sing 198 n n C14 H143 BCL sing 199 n n C15 C16 BCL sing 200 n n C15 H151 BCL sing 201 n n C15 H152 BCL sing 202 n n C16 C17 BCL sing 203 n n C16 H161 BCL sing 204 n n C16 H162 BCL sing 205 n n C17 C18 BCL sing 206 n n C17 H171 BCL sing 207 n n C17 H172 BCL sing 208 n n C18 C19 BCL sing 209 n n C18 C20 BCL sing 210 n n C18 H18 BCL sing 211 n n C19 H191 BCL sing 212 n n C19 H192 BCL sing 213 n n C19 H193 BCL sing 214 n n C20 H201 BCL sing 215 n n C20 H202 BCL sing 216 n n C20 H203 BCL sing 217 n n # _atom_sites.entry_id 1PSS _atom_sites.fract_transf_matrix[1][1] 0.007246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 2 2 BCL BCL . E 5 BPH L 1 271 6 BPH BPH . F 6 U10 L 1 272 9 U10 U10 . G 7 FE M 1 302 7 FE FE . H 4 BCL M 1 1 1 BCL BCL . I 4 BCL M 1 3 3 BCL BCL . J 4 BCL M 1 4 4 BCL BCL . K 5 BPH M 1 5 5 BPH BPH . L 6 U10 M 1 303 8 U10 U10 . M 8 CRT M 1 304 10 CRT CRT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG BCL . . . J 4 32.77 38.718 43.288 1 2 ? MG BCL 4 M 1 HETATM 2 C CHA BCL . . . J 4 35.985 37.566 42.994 1 2 ? CHA BCL 4 M 1 HETATM 3 C CHB BCL . . . J 4 31.588 35.545 43.264 1 2 ? CHB BCL 4 M 1 HETATM 4 C CHC BCL . . . J 4 29.635 39.843 43.834 1 6.27 ? CHC BCL 4 M 1 HETATM 5 C CHD BCL . . . J 4 34.037 41.915 43.352 1 2 ? CHD BCL 4 M 1 HETATM 6 N NA BCL . . . J 4 33.66 36.872 43.113 1 2.94 ? NA BCL 4 M 1 HETATM 7 C C1A BCL . . . J 4 35.008 36.568 43.023 1 2 ? C1A BCL 4 M 1 HETATM 8 C C2A BCL . . . J 4 35.23 35.071 42.941 1 4.73 ? C2A BCL 4 M 1 HETATM 9 C C3A BCL . . . J 4 33.85 34.514 42.952 1 2.85 ? C3A BCL 4 M 1 HETATM 10 C C4A BCL . . . J 4 32.946 35.7 43.081 1 2 ? C4A BCL 4 M 1 HETATM 11 C CMA BCL . . . J 4 33.532 33.835 41.647 1 7.75 ? CMA BCL 4 M 1 HETATM 12 C CAA BCL . . . J 4 35.93 34.514 44.195 1 11.84 ? CAA BCL 4 M 1 HETATM 13 C CBA BCL . . . J 4 35.219 35.01 45.502 1 14.28 ? CBA BCL 4 M 1 HETATM 14 C CGA BCL . . . J 4 35.453 34.304 46.819 1 13.13 ? CGA BCL 4 M 1 HETATM 15 O O1A BCL . . . J 4 36.513 33.708 47.009 1 12.39 ? O1A BCL 4 M 1 HETATM 16 O O2A BCL . . . J 4 34.511 34.33 47.618 1 14.41 ? O2A BCL 4 M 1 HETATM 17 N NB BCL . . . J 4 30.923 37.839 43.536 1 4.22 ? NB BCL 4 M 1 HETATM 18 C C1B BCL . . . J 4 30.633 36.509 43.493 1 2 ? C1B BCL 4 M 1 HETATM 19 C C2B BCL . . . J 4 29.302 36.248 43.697 1 2 ? C2B BCL 4 M 1 HETATM 20 C C3B BCL . . . J 4 28.691 37.501 43.879 1 6.31 ? C3B BCL 4 M 1 HETATM 21 C C4B BCL . . . J 4 29.726 38.452 43.767 1 5.24 ? C4B BCL 4 M 1 HETATM 22 C CMB BCL . . . J 4 28.766 34.838 43.768 1 2 ? CMB BCL 4 M 1 HETATM 23 C CAB BCL . . . J 4 27.32 37.791 44.095 1 11.08 ? CAB BCL 4 M 1 HETATM 24 O OBB BCL . . . J 4 26.945 38.926 44.36 1 12.13 ? OBB BCL 4 M 1 HETATM 25 C CBB BCL . . . J 4 26.228 36.725 44.084 1 8.41 ? CBB BCL 4 M 1 HETATM 26 N NC BCL . . . J 4 31.957 40.583 43.494 1 3.07 ? NC BCL 4 M 1 HETATM 27 C C1C BCL . . . J 4 30.624 40.825 43.705 1 6.38 ? C1C BCL 4 M 1 HETATM 28 C C2C BCL . . . J 4 30.387 42.319 43.863 1 7.77 ? C2C BCL 4 M 1 HETATM 29 C C3C BCL . . . J 4 31.751 42.931 43.712 1 4.93 ? C3C BCL 4 M 1 HETATM 30 C C4C BCL . . . J 4 32.658 41.772 43.478 1 3.48 ? C4C BCL 4 M 1 HETATM 31 C CMC BCL . . . J 4 29.514 42.814 42.745 1 17.36 ? CMC BCL 4 M 1 HETATM 32 C CAC BCL . . . J 4 32.182 43.631 44.98 1 10.57 ? CAC BCL 4 M 1 HETATM 33 C CBC BCL . . . J 4 32.03 42.761 46.244 1 8.53 ? CBC BCL 4 M 1 HETATM 34 N ND BCL . . . J 4 34.61 39.586 43.196 1 3.4 ? ND BCL 4 M 1 HETATM 35 C C1D BCL . . . J 4 34.967 40.892 43.215 1 2 ? C1D BCL 4 M 1 HETATM 36 C C2D BCL . . . J 4 36.333 41.015 43.083 1 2 ? C2D BCL 4 M 1 HETATM 37 C C3D BCL . . . J 4 36.91 39.758 42.981 1 3.89 ? C3D BCL 4 M 1 HETATM 38 C C4D BCL . . . J 4 35.776 38.941 43.066 1 2 ? C4D BCL 4 M 1 HETATM 39 C CMD BCL . . . J 4 37.125 42.288 43.024 1 2 ? CMD BCL 4 M 1 HETATM 40 C CAD BCL . . . J 4 37.933 38.846 42.843 1 9.03 ? CAD BCL 4 M 1 HETATM 41 O OBD BCL . . . J 4 39.103 39.172 42.692 1 15.06 ? OBD BCL 4 M 1 HETATM 42 C CBD BCL . . . J 4 37.472 37.414 42.832 1 7.05 ? CBD BCL 4 M 1 HETATM 43 C CGD BCL . . . J 4 37.808 36.843 41.469 1 13 ? CGD BCL 4 M 1 HETATM 44 O O1D BCL . . . J 4 37.093 37.056 40.47 1 10.33 ? O1D BCL 4 M 1 HETATM 45 O O2D BCL . . . J 4 38.851 36.184 41.453 1 19.91 ? O2D BCL 4 M 1 HETATM 46 C CED BCL . . . J 4 39.449 35.833 40.18 1 28.65 ? CED BCL 4 M 1 HETATM 47 C C1 BCL . . . J 4 34.702 33.601 48.873 1 15.95 ? C1 BCL 4 M 1 HETATM 48 C C2 BCL . . . J 4 33.804 32.451 48.911 1 11.21 ? C2 BCL 4 M 1 HETATM 49 C C3 BCL . . . J 4 34.238 31.204 49.318 1 7.59 ? C3 BCL 4 M 1 HETATM 50 C C4 BCL . . . J 4 35.675 31.017 49.785 1 2 ? C4 BCL 4 M 1 HETATM 51 C C5 BCL . . . J 4 33.302 30.009 49.274 1 7.44 ? C5 BCL 4 M 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 51 #