data_1PST # _model_server_result.job_id LbjOaBaclFb5idBLGzllYg _model_server_result.datetime_utc '2025-02-27 01:45:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pst # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 1PST # _exptl.entry_id 1PST _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 911.504 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOCHLOROPHYLL A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PST _cell.length_a 138 _cell.length_b 77.5 _cell.length_c 141.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PST _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG BCL . L BCL 2 1_555 A NE2 HIS 169 L HIS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc2 E MG BCL . L BCL 4 1_555 A NE2 HIS 149 L HIS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc3 A NE2 HIS 186 L HIS 190 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc4 A NE2 HIS 226 L HIS 230 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc5 I MG BCL . M BCL 1 1_555 B NE2 HIS 177 M HIS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc6 B NE2 HIS 214 M HIS 219 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc7 B OE1 GLU 229 M GLU 234 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc8 B OE2 GLU 229 M GLU 234 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc9 B NE2 HIS 261 M HIS 266 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? # _chem_comp.formula 'C55 H74 Mg N4 O6' _chem_comp.formula_weight 911.504 _chem_comp.id BCL _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOCHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA BCL sing 70 n n MG NB BCL sing 71 n n MG NC BCL sing 72 n n MG ND BCL sing 73 n n CHA C1A BCL sing 74 n n CHA C4D BCL doub 75 n n CHA CBD BCL sing 76 n n CHB C4A BCL doub 77 n n CHB C1B BCL sing 78 n n CHB HHB BCL sing 79 n n CHC C4B BCL sing 80 n n CHC C1C BCL doub 81 n n CHC HHC BCL sing 82 n n CHD C4C BCL sing 83 n n CHD C1D BCL doub 84 n n CHD HHD BCL sing 85 n n NA C1A BCL doub 86 n n NA C4A BCL sing 87 n n C1A C2A BCL sing 88 n n C2A C3A BCL sing 89 n n C2A CAA BCL sing 90 n n C2A H2A BCL sing 91 n n C3A C4A BCL sing 92 n n C3A CMA BCL sing 93 n n C3A H3A BCL sing 94 n n CMA HMA1 BCL sing 95 n n CMA HMA2 BCL sing 96 n n CMA HMA3 BCL sing 97 n n CAA CBA BCL sing 98 n n CAA HAA1 BCL sing 99 n n CAA HAA2 BCL sing 100 n n CBA CGA BCL sing 101 n n CBA HBA1 BCL sing 102 n n CBA HBA2 BCL sing 103 n n CGA O1A BCL doub 104 n n CGA O2A BCL sing 105 n n O2A C1 BCL sing 106 n n NB C1B BCL sing 107 n y NB C4B BCL sing 108 n y C1B C2B BCL doub 109 n y C2B C3B BCL sing 110 n y C2B CMB BCL sing 111 n n C3B C4B BCL doub 112 n y C3B CAB BCL sing 113 n n CMB HMB1 BCL sing 114 n n CMB HMB2 BCL sing 115 n n CMB HMB3 BCL sing 116 n n CAB OBB BCL doub 117 n n CAB CBB BCL sing 118 n n CBB HBB1 BCL sing 119 n n CBB HBB2 BCL sing 120 n n CBB HBB3 BCL sing 121 n n NC C1C BCL sing 122 n n NC C4C BCL doub 123 n n C1C C2C BCL sing 124 n n C2C C3C BCL sing 125 n n C2C CMC BCL sing 126 n n C2C H2C BCL sing 127 n n C3C C4C BCL sing 128 n n C3C CAC BCL sing 129 n n C3C H3C BCL sing 130 n n CMC HMC1 BCL sing 131 n n CMC HMC2 BCL sing 132 n n CMC HMC3 BCL sing 133 n n CAC CBC BCL sing 134 n n CAC HAC1 BCL sing 135 n n CAC HAC2 BCL sing 136 n n CBC HBC1 BCL sing 137 n n CBC HBC2 BCL sing 138 n n CBC HBC3 BCL sing 139 n n ND C1D BCL sing 140 n n ND C4D BCL sing 141 n n C1D C2D BCL sing 142 n n C2D C3D BCL doub 143 n n C2D CMD BCL sing 144 n n C3D C4D BCL sing 145 n n C3D CAD BCL sing 146 n n CMD HMD1 BCL sing 147 n n CMD HMD2 BCL sing 148 n n CMD HMD3 BCL sing 149 n n CAD OBD BCL doub 150 n n CAD CBD BCL sing 151 n n CBD CGD BCL sing 152 n n CBD HBD BCL sing 153 n n CGD O1D BCL doub 154 n n CGD O2D BCL sing 155 n n O2D CED BCL sing 156 n n CED HED1 BCL sing 157 n n CED HED2 BCL sing 158 n n CED HED3 BCL sing 159 n n C1 C2 BCL sing 160 n n C1 H11 BCL sing 161 n n C1 H12 BCL sing 162 n n C2 C3 BCL doub 163 e n C2 H2 BCL sing 164 n n C3 C4 BCL sing 165 n n C3 C5 BCL sing 166 n n C4 H41 BCL sing 167 n n C4 H42 BCL sing 168 n n C4 H43 BCL sing 169 n n C5 C6 BCL sing 170 n n C5 H51 BCL sing 171 n n C5 H52 BCL sing 172 n n C6 C7 BCL sing 173 n n C6 H61 BCL sing 174 n n C6 H62 BCL sing 175 n n C7 C8 BCL sing 176 n n C7 H71 BCL sing 177 n n C7 H72 BCL sing 178 n n C8 C9 BCL sing 179 n n C8 C10 BCL sing 180 n n C8 H8 BCL sing 181 n n C9 H91 BCL sing 182 n n C9 H92 BCL sing 183 n n C9 H93 BCL sing 184 n n C10 C11 BCL sing 185 n n C10 H101 BCL sing 186 n n C10 H102 BCL sing 187 n n C11 C12 BCL sing 188 n n C11 H111 BCL sing 189 n n C11 H112 BCL sing 190 n n C12 C13 BCL sing 191 n n C12 H121 BCL sing 192 n n C12 H122 BCL sing 193 n n C13 C14 BCL sing 194 n n C13 C15 BCL sing 195 n n C13 H13 BCL sing 196 n n C14 H141 BCL sing 197 n n C14 H142 BCL sing 198 n n C14 H143 BCL sing 199 n n C15 C16 BCL sing 200 n n C15 H151 BCL sing 201 n n C15 H152 BCL sing 202 n n C16 C17 BCL sing 203 n n C16 H161 BCL sing 204 n n C16 H162 BCL sing 205 n n C17 C18 BCL sing 206 n n C17 H171 BCL sing 207 n n C17 H172 BCL sing 208 n n C18 C19 BCL sing 209 n n C18 C20 BCL sing 210 n n C18 H18 BCL sing 211 n n C19 H191 BCL sing 212 n n C19 H192 BCL sing 213 n n C19 H193 BCL sing 214 n n C20 H201 BCL sing 215 n n C20 H202 BCL sing 216 n n C20 H203 BCL sing 217 n n # _atom_sites.entry_id 1PST _atom_sites.fract_transf_matrix[1][1] 0.007246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 2 2 BCL BCL . E 4 BCL L 1 4 4 BCL BCL . F 5 BPH L 1 271 6 BPH BPH . G 6 U10 L 1 272 9 U10 U10 . H 7 FE M 1 302 7 FE FE . I 4 BCL M 1 1 1 BCL BCL . J 5 BPH M 1 3 3 BPH BPH . K 5 BPH M 1 5 5 BPH BPH . L 6 U10 M 1 303 8 U10 U10 . M 8 CRT M 1 304 10 CRT CRT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG BCL . . . D 4 36.546 48.544 46.442 1 7.34 ? MG BCL 2 L 1 HETATM 2 C CHA BCL . . . D 4 33.299 47.414 46.803 1 9.49 ? CHA BCL 2 L 1 HETATM 3 C CHB BCL . . . D 4 37.468 46.902 49.247 1 9.95 ? CHB BCL 2 L 1 HETATM 4 C CHC BCL . . . D 4 39.798 49.401 45.915 1 13.4 ? CHC BCL 2 L 1 HETATM 5 C CHD BCL . . . D 4 35.577 50.106 43.581 1 10.07 ? CHD BCL 2 L 1 HETATM 6 N NA BCL . . . D 4 35.525 47.367 47.803 1 9.43 ? NA BCL 2 L 1 HETATM 7 C C1A BCL . . . D 4 34.184 47.006 47.813 1 6.75 ? C1A BCL 2 L 1 HETATM 8 C C2A BCL . . . D 4 33.854 46.22 49.061 1 5.35 ? C2A BCL 2 L 1 HETATM 9 C C3A BCL . . . D 4 35.128 46.135 49.815 1 4.6 ? C3A BCL 2 L 1 HETATM 10 C C4A BCL . . . D 4 36.114 46.854 48.941 1 7.38 ? C4A BCL 2 L 1 HETATM 11 C CMA BCL . . . D 4 35.012 46.889 51.122 1 2 ? CMA BCL 2 L 1 HETATM 12 C CAA BCL . . . D 4 33.434 44.811 48.799 1 6.85 ? CAA BCL 2 L 1 HETATM 13 C CBA BCL . . . D 4 32.158 44.662 49.578 1 8.81 ? CBA BCL 2 L 1 HETATM 14 C CGA BCL . . . D 4 31.691 43.249 49.739 1 9.8 ? CGA BCL 2 L 1 HETATM 15 O O1A BCL . . . D 4 32.525 42.417 50.092 1 18.15 ? O1A BCL 2 L 1 HETATM 16 O O2A BCL . . . D 4 30.536 42.985 49.383 1 9.67 ? O2A BCL 2 L 1 HETATM 17 N NB BCL . . . D 4 38.331 48.187 47.396 1 12.88 ? NB BCL 2 L 1 HETATM 18 C C1B BCL . . . D 4 38.512 47.489 48.547 1 12.95 ? C1B BCL 2 L 1 HETATM 19 C C2B BCL . . . D 4 39.842 47.408 48.911 1 12.88 ? C2B BCL 2 L 1 HETATM 20 C C3B BCL . . . D 4 40.551 48.113 47.925 1 15.36 ? C3B BCL 2 L 1 HETATM 21 C C4B BCL . . . D 4 39.583 48.585 47.032 1 14.96 ? C4B BCL 2 L 1 HETATM 22 C CMB BCL . . . D 4 40.303 46.67 50.164 1 12.42 ? CMB BCL 2 L 1 HETATM 23 C CAB BCL . . . D 4 41.949 48.314 47.812 1 16.26 ? CAB BCL 2 L 1 HETATM 24 O OBB BCL . . . D 4 42.398 49.355 47.364 1 15.88 ? OBB BCL 2 L 1 HETATM 25 C CBB BCL . . . D 4 42.931 47.342 48.462 1 13.69 ? CBB BCL 2 L 1 HETATM 26 N NC BCL . . . D 4 37.523 49.659 45.03 1 8.21 ? NC BCL 2 L 1 HETATM 27 C C1C BCL . . . D 4 38.879 49.91 44.999 1 10.59 ? C1C BCL 2 L 1 HETATM 28 C C2C BCL . . . D 4 39.263 50.741 43.78 1 9.55 ? C2C BCL 2 L 1 HETATM 29 C C3C BCL . . . D 4 37.953 50.952 43.053 1 10.98 ? C3C BCL 2 L 1 HETATM 30 C C4C BCL . . . D 4 36.929 50.229 43.917 1 9.5 ? C4C BCL 2 L 1 HETATM 31 C CMC BCL . . . D 4 39.793 52.102 44.196 1 10.1 ? CMC BCL 2 L 1 HETATM 32 C CAC BCL . . . D 4 37.954 50.355 41.605 1 7.6 ? CAC BCL 2 L 1 HETATM 33 C CBC BCL . . . D 4 38.546 48.959 41.305 1 2 ? CBC BCL 2 L 1 HETATM 34 N ND BCL . . . D 4 34.809 48.769 45.415 1 8.49 ? ND BCL 2 L 1 HETATM 35 C C1D BCL . . . D 4 34.585 49.42 44.265 1 9.4 ? C1D BCL 2 L 1 HETATM 36 C C2D BCL . . . D 4 33.281 49.255 43.868 1 6.91 ? C2D BCL 2 L 1 HETATM 37 C C3D BCL . . . D 4 32.592 48.462 44.784 1 10.21 ? C3D BCL 2 L 1 HETATM 38 C C4D BCL . . . D 4 33.616 48.218 45.705 1 9.21 ? C4D BCL 2 L 1 HETATM 39 C CMD BCL . . . D 4 32.705 49.836 42.607 1 9.62 ? CMD BCL 2 L 1 HETATM 40 C CAD BCL . . . D 4 31.516 47.765 45.308 1 14.54 ? CAD BCL 2 L 1 HETATM 41 O OBD BCL . . . D 4 30.424 47.746 44.753 1 17.67 ? OBD BCL 2 L 1 HETATM 42 C CBD BCL . . . D 4 31.851 47.036 46.596 1 15.01 ? CBD BCL 2 L 1 HETATM 43 C CGD BCL . . . D 4 30.971 47.501 47.765 1 16.95 ? CGD BCL 2 L 1 HETATM 44 O O1D BCL . . . D 4 31.081 48.611 48.276 1 23.01 ? O1D BCL 2 L 1 HETATM 45 O O2D BCL . . . D 4 30.224 46.628 48.212 1 18.25 ? O2D BCL 2 L 1 HETATM 46 C CED BCL . . . D 4 28.797 46.757 48.103 1 18.85 ? CED BCL 2 L 1 HETATM 47 C C1 BCL . . . D 4 29.68 41.982 50.035 1 3.31 ? C1 BCL 2 L 1 HETATM 48 C C2 BCL . . . D 4 29.614 40.709 49.286 1 8.36 ? C2 BCL 2 L 1 HETATM 49 C C3 BCL . . . D 4 28.568 40.285 48.474 1 7.55 ? C3 BCL 2 L 1 HETATM 50 C C4 BCL . . . D 4 27.593 41.297 47.908 1 11.03 ? C4 BCL 2 L 1 HETATM 51 C C5 BCL . . . D 4 28.381 38.817 48.109 1 6.59 ? C5 BCL 2 L 1 HETATM 52 C C6 BCL . . . D 4 26.949 38.341 48.374 1 4.29 ? C6 BCL 2 L 1 HETATM 53 C C7 BCL . . . D 4 26.864 36.821 48.171 1 10.19 ? C7 BCL 2 L 1 HETATM 54 C C8 BCL . . . D 4 25.449 36.242 48.046 1 7.99 ? C8 BCL 2 L 1 HETATM 55 C C9 BCL . . . D 4 24.624 36.473 49.288 1 11.14 ? C9 BCL 2 L 1 HETATM 56 C C10 BCL . . . D 4 25.4 34.752 47.822 1 6.89 ? C10 BCL 2 L 1 HETATM 57 C C11 BCL . . . D 4 26.088 34.2 46.602 1 9.88 ? C11 BCL 2 L 1 HETATM 58 C C12 BCL . . . D 4 25.698 32.721 46.523 1 12.76 ? C12 BCL 2 L 1 HETATM 59 C C13 BCL . . . D 4 26.459 31.862 45.515 1 9.59 ? C13 BCL 2 L 1 HETATM 60 C C14 BCL . . . D 4 26.219 32.281 44.076 1 14.36 ? C14 BCL 2 L 1 HETATM 61 C C15 BCL . . . D 4 26.029 30.443 45.721 1 6.26 ? C15 BCL 2 L 1 HETATM 62 C C16 BCL . . . D 4 26.921 29.453 45.041 1 3.76 ? C16 BCL 2 L 1 HETATM 63 C C17 BCL . . . D 4 26.691 28.149 45.761 1 2.95 ? C17 BCL 2 L 1 HETATM 64 C C18 BCL . . . D 4 27.756 27.139 45.431 1 7.21 ? C18 BCL 2 L 1 HETATM 65 C C19 BCL . . . D 4 27.496 25.866 46.182 1 11.16 ? C19 BCL 2 L 1 HETATM 66 C C20 BCL . . . D 4 29.141 27.598 45.818 1 5.06 ? C20 BCL 2 L 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 66 #