data_1PST # _model_server_result.job_id -KD5ShzcvbnI2mHUkZNHFw _model_server_result.datetime_utc '2025-02-27 01:07:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pst # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":3}' # _entry.id 1PST # _exptl.entry_id 1PST _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 889.215 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BACTERIOPHEOPHYTIN A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PST _cell.length_a 138 _cell.length_b 77.5 _cell.length_c 141.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PST _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG BCL . L BCL 2 1_555 A NE2 HIS 169 L HIS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc2 E MG BCL . L BCL 4 1_555 A NE2 HIS 149 L HIS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc3 A NE2 HIS 186 L HIS 190 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc4 A NE2 HIS 226 L HIS 230 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc5 I MG BCL . M BCL 1 1_555 B NE2 HIS 177 M HIS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc6 B NE2 HIS 214 M HIS 219 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc7 B OE1 GLU 229 M GLU 234 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc8 B OE2 GLU 229 M GLU 234 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc9 B NE2 HIS 261 M HIS 266 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? # _chem_comp.formula 'C55 H76 N4 O6' _chem_comp.formula_weight 889.215 _chem_comp.id BPH _chem_comp.mon_nstd_flag . _chem_comp.name 'BACTERIOPHEOPHYTIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1D CGD BPH doub 218 n n CGD O2D BPH sing 219 n n CGD CBD BPH sing 220 n n O2D CED BPH sing 221 n n CBD CHA BPH sing 222 n n CBD CAD BPH sing 223 n n CHA C4D BPH doub 224 n y CHA C1A BPH sing 225 n y C4D C3D BPH sing 226 n y C4D ND BPH sing 227 n y C3D CAD BPH sing 228 n n C3D C2D BPH doub 229 n y CAD OBD BPH doub 230 n n C2D CMD BPH sing 231 n n C2D C1D BPH sing 232 n y C1D ND BPH sing 233 n y C1D CHD BPH doub 234 n y CHD C4C BPH sing 235 n y C4C C3C BPH sing 236 n n C4C NC BPH doub 237 n y C3C CAC BPH sing 238 n n C3C C2C BPH sing 239 n n CAC CBC BPH sing 240 n n C2C CMC BPH sing 241 n n C2C C1C BPH sing 242 n n C1C NC BPH sing 243 n y C1C CHC BPH doub 244 n y CHC C4B BPH sing 245 n y C4B C3B BPH doub 246 n y C4B NB BPH sing 247 n y C3B CAB BPH sing 248 n n C3B C2B BPH sing 249 n y CAB CBB BPH sing 250 n n CAB OBB BPH doub 251 n n C2B CMB BPH sing 252 n n C2B C1B BPH doub 253 n y C1B NB BPH sing 254 n y C1B CHB BPH sing 255 n y CHB C4A BPH doub 256 n y C4A C3A BPH sing 257 n n C4A NA BPH sing 258 n y C3A CMA BPH sing 259 n n C3A C2A BPH sing 260 n n C2A C1A BPH sing 261 n n C2A CAA BPH sing 262 n n C1A NA BPH doub 263 n y CAA CBA BPH sing 264 n n CBA CGA BPH sing 265 n n CGA O1A BPH doub 266 n n CGA O2A BPH sing 267 n n O2A C1 BPH sing 268 n n C1 C2 BPH sing 269 n n C2 C3 BPH doub 270 e n C3 C4 BPH sing 271 n n C3 C5 BPH sing 272 n n C5 C6 BPH sing 273 n n C6 C7 BPH sing 274 n n C7 C8 BPH sing 275 n n C8 C9 BPH sing 276 n n C8 C10 BPH sing 277 n n C10 C11 BPH sing 278 n n C11 C12 BPH sing 279 n n C12 C13 BPH sing 280 n n C13 C14 BPH sing 281 n n C13 C15 BPH sing 282 n n C15 C16 BPH sing 283 n n C16 C17 BPH sing 284 n n C17 C18 BPH sing 285 n n C18 C19 BPH sing 286 n n C18 C20 BPH sing 287 n n CED HED1 BPH sing 288 n n CED HED2 BPH sing 289 n n CED HED3 BPH sing 290 n n CBD HBD BPH sing 291 n n CMD HMD1 BPH sing 292 n n CMD HMD2 BPH sing 293 n n CMD HMD3 BPH sing 294 n n ND HD BPH sing 295 n n CHD HHD BPH sing 296 n n C3C H3C BPH sing 297 n n CAC HAC1 BPH sing 298 n n CAC HAC2 BPH sing 299 n n CBC HBC1 BPH sing 300 n n CBC HBC2 BPH sing 301 n n CBC HBC3 BPH sing 302 n n C2C H2C BPH sing 303 n n CMC HMC1 BPH sing 304 n n CMC HMC2 BPH sing 305 n n CMC HMC3 BPH sing 306 n n CHC HHC BPH sing 307 n n CBB HBB1 BPH sing 308 n n CBB HBB2 BPH sing 309 n n CBB HBB3 BPH sing 310 n n CMB HMB1 BPH sing 311 n n CMB HMB2 BPH sing 312 n n CMB HMB3 BPH sing 313 n n NB HB BPH sing 314 n n CHB HHB BPH sing 315 n n C3A H3A BPH sing 316 n n CMA HMA1 BPH sing 317 n n CMA HMA2 BPH sing 318 n n CMA HMA3 BPH sing 319 n n C2A H2A BPH sing 320 n n CAA HAA1 BPH sing 321 n n CAA HAA2 BPH sing 322 n n CBA HBA1 BPH sing 323 n n CBA HBA2 BPH sing 324 n n C1 H1C1 BPH sing 325 n n C1 H1C2 BPH sing 326 n n C2 H2 BPH sing 327 n n C4 H4C1 BPH sing 328 n n C4 H4C2 BPH sing 329 n n C4 H4C3 BPH sing 330 n n C5 H5C1 BPH sing 331 n n C5 H5C2 BPH sing 332 n n C6 H6C1 BPH sing 333 n n C6 H6C2 BPH sing 334 n n C7 H7C1 BPH sing 335 n n C7 H7C2 BPH sing 336 n n C8 H8 BPH sing 337 n n C9 H9C1 BPH sing 338 n n C9 H9C2 BPH sing 339 n n C9 H9C3 BPH sing 340 n n C10 H101 BPH sing 341 n n C10 H102 BPH sing 342 n n C11 H111 BPH sing 343 n n C11 H112 BPH sing 344 n n C12 H121 BPH sing 345 n n C12 H122 BPH sing 346 n n C13 H13 BPH sing 347 n n C14 H141 BPH sing 348 n n C14 H142 BPH sing 349 n n C14 H143 BPH sing 350 n n C15 H151 BPH sing 351 n n C15 H152 BPH sing 352 n n C16 H161 BPH sing 353 n n C16 H162 BPH sing 354 n n C17 H171 BPH sing 355 n n C17 H172 BPH sing 356 n n C18 H18 BPH sing 357 n n C19 H191 BPH sing 358 n n C19 H192 BPH sing 359 n n C19 H193 BPH sing 360 n n C20 H201 BPH sing 361 n n C20 H202 BPH sing 362 n n C20 H203 BPH sing 363 n n # _atom_sites.entry_id 1PST _atom_sites.fract_transf_matrix[1][1] 0.007246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 2 2 BCL BCL . E 4 BCL L 1 4 4 BCL BCL . F 5 BPH L 1 271 6 BPH BPH . G 6 U10 L 1 272 9 U10 U10 . H 7 FE M 1 302 7 FE FE . I 4 BCL M 1 1 1 BCL BCL . J 5 BPH M 1 3 3 BPH BPH . K 5 BPH M 1 5 5 BPH BPH . L 6 U10 M 1 303 8 U10 U10 . M 8 CRT M 1 304 10 CRT CRT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1D BPH . . . J 5 48.873 42.106 48.428 1 16.27 ? O1D BPH 3 M 1 HETATM 2 C CGD BPH . . . J 5 48.325 42.878 47.648 1 10.33 ? CGD BPH 3 M 1 HETATM 3 O O2D BPH . . . J 5 48.308 42.636 46.426 1 9.22 ? O2D BPH 3 M 1 HETATM 4 C CED BPH . . . J 5 47.884 41.362 45.894 1 15.27 ? CED BPH 3 M 1 HETATM 5 C CBD BPH . . . J 5 47.76 44.231 48.127 1 5.93 ? CBD BPH 3 M 1 HETATM 6 C CHA BPH . . . J 5 46.336 44.455 47.654 1 2 ? CHA BPH 3 M 1 HETATM 7 C C4D BPH . . . J 5 46.442 45.392 46.657 1 3.18 ? C4D BPH 3 M 1 HETATM 8 C C3D BPH . . . J 5 47.722 45.894 46.399 1 3.19 ? C3D BPH 3 M 1 HETATM 9 C CAD BPH . . . J 5 48.531 45.223 47.285 1 3.74 ? CAD BPH 3 M 1 HETATM 10 O OBD BPH . . . J 5 49.741 45.422 47.416 1 6.5 ? OBD BPH 3 M 1 HETATM 11 C C2D BPH . . . J 5 47.435 46.784 45.391 1 2 ? C2D BPH 3 M 1 HETATM 12 C CMD BPH . . . J 5 48.451 47.678 44.737 1 2.23 ? CMD BPH 3 M 1 HETATM 13 C C1D BPH . . . J 5 46.098 46.756 45.124 1 2.66 ? C1D BPH 3 M 1 HETATM 14 N ND BPH . . . J 5 45.42 45.884 45.917 1 5.74 ? ND BPH 3 M 1 HETATM 15 C CHD BPH . . . J 5 45.516 47.509 44.134 1 2 ? CHD BPH 3 M 1 HETATM 16 C C4C BPH . . . J 5 44.19 47.468 43.763 1 4.5 ? C4C BPH 3 M 1 HETATM 17 C C3C BPH . . . J 5 43.652 48.301 42.629 1 2 ? C3C BPH 3 M 1 HETATM 18 C CAC BPH . . . J 5 43.831 49.765 43.019 1 2 ? CAC BPH 3 M 1 HETATM 19 C CBC BPH . . . J 5 42.772 50.733 42.51 1 6.65 ? CBC BPH 3 M 1 HETATM 20 C C2C BPH . . . J 5 42.237 47.873 42.567 1 3.61 ? C2C BPH 3 M 1 HETATM 21 C CMC BPH . . . J 5 42.023 47.216 41.22 1 8.06 ? CMC BPH 3 M 1 HETATM 22 C C1C BPH . . . J 5 42.072 46.851 43.685 1 4.08 ? C1C BPH 3 M 1 HETATM 23 N NC BPH . . . J 5 43.252 46.64 44.35 1 2 ? NC BPH 3 M 1 HETATM 24 C CHC BPH . . . J 5 40.848 46.34 44.099 1 9.55 ? CHC BPH 3 M 1 HETATM 25 C C4B BPH . . . J 5 40.55 45.544 45.212 1 15.4 ? C4B BPH 3 M 1 HETATM 26 C C3B BPH . . . J 5 39.291 45.054 45.627 1 13.53 ? C3B BPH 3 M 1 HETATM 27 C CAB BPH . . . J 5 38.009 45.261 45.058 1 11.84 ? CAB BPH 3 M 1 HETATM 28 C CBB BPH . . . J 5 37.741 46.467 44.183 1 4.01 ? CBB BPH 3 M 1 HETATM 29 O OBB BPH . . . J 5 37.047 44.531 45.302 1 13.41 ? OBB BPH 3 M 1 HETATM 30 C C2B BPH . . . J 5 39.537 44.295 46.788 1 14.43 ? C2B BPH 3 M 1 HETATM 31 C CMB BPH . . . J 5 38.555 43.558 47.685 1 12.04 ? CMB BPH 3 M 1 HETATM 32 C C1B BPH . . . J 5 40.899 44.358 47.01 1 13.89 ? C1B BPH 3 M 1 HETATM 33 N NB BPH . . . J 5 41.549 45.125 46.069 1 19.81 ? NB BPH 3 M 1 HETATM 34 C CHB BPH . . . J 5 41.56 43.672 48.015 1 5.08 ? CHB BPH 3 M 1 HETATM 35 C C4A BPH . . . J 5 42.919 43.635 48.284 1 6.33 ? C4A BPH 3 M 1 HETATM 36 C C3A BPH . . . J 5 43.487 42.684 49.331 1 9.03 ? C3A BPH 3 M 1 HETATM 37 C CMA BPH . . . J 5 43.067 41.264 48.99 1 8.99 ? CMA BPH 3 M 1 HETATM 38 C C2A BPH . . . J 5 44.986 42.844 49.235 1 9.24 ? C2A BPH 3 M 1 HETATM 39 C C1A BPH . . . J 5 45.147 43.896 48.136 1 5 ? C1A BPH 3 M 1 HETATM 40 N NA BPH . . . J 5 43.926 44.324 47.61 1 2.42 ? NA BPH 3 M 1 HETATM 41 C CAA BPH . . . J 5 45.497 43.295 50.601 1 12.54 ? CAA BPH 3 M 1 HETATM 42 C CBA BPH . . . J 5 45.575 42.137 51.606 1 17.18 ? CBA BPH 3 M 1 HETATM 43 C CGA BPH . . . J 5 45.46 42.594 53.056 1 16.76 ? CGA BPH 3 M 1 HETATM 44 O O1A BPH . . . J 5 44.349 42.697 53.567 1 16.15 ? O1A BPH 3 M 1 HETATM 45 O O2A BPH . . . J 5 46.514 42.74 53.682 1 16.44 ? O2A BPH 3 M 1 HETATM 46 C C1 BPH . . . J 5 46.828 43.951 54.462 1 11.83 ? C1 BPH 3 M 1 HETATM 47 C C2 BPH . . . J 5 48.006 43.608 55.267 1 5.77 ? C2 BPH 3 M 1 HETATM 48 C C3 BPH . . . J 5 49.203 44.285 55.194 1 4.26 ? C3 BPH 3 M 1 HETATM 49 C C4 BPH . . . J 5 49.315 45.483 54.272 1 5.19 ? C4 BPH 3 M 1 HETATM 50 C C5 BPH . . . J 5 50.431 43.815 55.961 1 6.07 ? C5 BPH 3 M 1 HETATM 51 C C6 BPH . . . J 5 50.809 44.738 57.109 1 13.95 ? C6 BPH 3 M 1 HETATM 52 C C7 BPH . . . J 5 51.485 43.936 58.226 1 15.96 ? C7 BPH 3 M 1 HETATM 53 C C8 BPH . . . J 5 52.521 44.67 59.069 1 17.37 ? C8 BPH 3 M 1 HETATM 54 C C9 BPH . . . J 5 53.2 43.65 59.952 1 15.68 ? C9 BPH 3 M 1 HETATM 55 C C10 BPH . . . J 5 51.873 45.759 59.916 1 19.84 ? C10 BPH 3 M 1 HETATM 56 C C11 BPH . . . J 5 52.84 46.727 60.606 1 24.01 ? C11 BPH 3 M 1 HETATM 57 C C12 BPH . . . J 5 51.995 47.702 61.449 1 26.6 ? C12 BPH 3 M 1 HETATM 58 C C13 BPH . . . J 5 52.646 49.023 61.919 1 26.78 ? C13 BPH 3 M 1 HETATM 59 C C14 BPH . . . J 5 53.941 48.906 62.712 1 25.28 ? C14 BPH 3 M 1 HETATM 60 C C15 BPH . . . J 5 51.634 50.021 62.509 1 25.72 ? C15 BPH 3 M 1 HETATM 61 C C16 BPH . . . J 5 50.791 49.439 63.63 1 29.41 ? C16 BPH 3 M 1 HETATM 62 C C17 BPH . . . J 5 49.69 50.359 64.169 1 29.22 ? C17 BPH 3 M 1 HETATM 63 C C18 BPH . . . J 5 48.951 49.753 65.382 1 29.03 ? C18 BPH 3 M 1 HETATM 64 C C19 BPH . . . J 5 47.721 50.541 65.806 1 29.8 ? C19 BPH 3 M 1 HETATM 65 C C20 BPH . . . J 5 49.845 49.504 66.588 1 27.37 ? C20 BPH 3 M 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 65 #