data_1PST
#
_model_server_result.job_id            RfOrymudn9NAObHGE4KblA 
_model_server_result.datetime_utc      '2025-02-27 01:07:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1pst 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":303}' 
#
_entry.id    1PST 
#
_exptl.entry_id    1PST 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              863.343 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            UBIQUINONE-10 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1PST 
_cell.length_a            138 
_cell.length_b            77.5 
_cell.length_c            141.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1PST 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D MG BCL . L BCL 2 1_555 A NE2 HIS 169 L HIS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? 
metalc ? metalc2 E MG BCL . L BCL 4 1_555 A NE2 HIS 149 L HIS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc3 A NE2 HIS 186 L HIS 190 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc4 A NE2 HIS 226 L HIS 230 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc5 I MG BCL . M BCL 1 1_555 B NE2 HIS 177 M HIS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc6 B NE2 HIS 214 M HIS 219 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc7 B OE1 GLU 229 M GLU 234 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc8 B OE2 GLU 229 M GLU 234 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc9 B NE2 HIS 261 M HIS 266 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
#
_chem_comp.formula           'C59 H90 O4' 
_chem_comp.formula_weight    863.343 
_chem_comp.id                U10 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              UBIQUINONE-10 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Coenzyme Q10' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 U10 sing 753 n n 
C1 C6 U10 doub 754 n n 
C1 C1M U10 sing 755 n n 
C2 C3 U10 sing 756 n n 
C2 O2 U10 doub 757 n n 
C3 C4 U10 doub 758 n n 
C3 O3 U10 sing 759 n n 
C4 C5 U10 sing 760 n n 
C4 O4 U10 sing 761 n n 
C5 C6 U10 sing 762 n n 
C5 O5 U10 doub 763 n n 
C6 C7 U10 sing 764 n n 
C1M H1M1 U10 sing 765 n n 
C1M H1M2 U10 sing 766 n n 
C1M H1M3 U10 sing 767 n n 
C3M O3 U10 sing 768 n n 
C3M H3M1 U10 sing 769 n n 
C3M H3M2 U10 sing 770 n n 
C3M H3M3 U10 sing 771 n n 
C4M O4 U10 sing 772 n n 
C4M H4M1 U10 sing 773 n n 
C4M H4M2 U10 sing 774 n n 
C4M H4M3 U10 sing 775 n n 
C7 C8 U10 sing 776 n n 
C7 H71 U10 sing 777 n n 
C7 H72 U10 sing 778 n n 
C8 C9 U10 doub 779 e n 
C8 H8 U10 sing 780 n n 
C9 C10 U10 sing 781 n n 
C9 C11 U10 sing 782 n n 
C10 H101 U10 sing 783 n n 
C10 H102 U10 sing 784 n n 
C10 H103 U10 sing 785 n n 
C11 C12 U10 sing 786 n n 
C11 H111 U10 sing 787 n n 
C11 H112 U10 sing 788 n n 
C12 C13 U10 sing 789 n n 
C12 H121 U10 sing 790 n n 
C12 H122 U10 sing 791 n n 
C13 C14 U10 doub 792 e n 
C13 H13 U10 sing 793 n n 
C14 C15 U10 sing 794 n n 
C14 C16 U10 sing 795 n n 
C15 H151 U10 sing 796 n n 
C15 H152 U10 sing 797 n n 
C15 H153 U10 sing 798 n n 
C16 C17 U10 sing 799 n n 
C16 H161 U10 sing 800 n n 
C16 H162 U10 sing 801 n n 
C17 C18 U10 sing 802 n n 
C17 H171 U10 sing 803 n n 
C17 H172 U10 sing 804 n n 
C18 C19 U10 doub 805 e n 
C18 H18 U10 sing 806 n n 
C19 C20 U10 sing 807 n n 
C19 C21 U10 sing 808 n n 
C20 H201 U10 sing 809 n n 
C20 H202 U10 sing 810 n n 
C20 H203 U10 sing 811 n n 
C21 C22 U10 sing 812 n n 
C21 H211 U10 sing 813 n n 
C21 H212 U10 sing 814 n n 
C22 C23 U10 sing 815 n n 
C22 H221 U10 sing 816 n n 
C22 H222 U10 sing 817 n n 
C23 C24 U10 doub 818 e n 
C23 H23 U10 sing 819 n n 
C24 C25 U10 sing 820 n n 
C24 C26 U10 sing 821 n n 
C25 H251 U10 sing 822 n n 
C25 H252 U10 sing 823 n n 
C25 H253 U10 sing 824 n n 
C26 C27 U10 sing 825 n n 
C26 H261 U10 sing 826 n n 
C26 H262 U10 sing 827 n n 
C27 C28 U10 sing 828 n n 
C27 H271 U10 sing 829 n n 
C27 H272 U10 sing 830 n n 
C28 C29 U10 doub 831 e n 
C28 H28 U10 sing 832 n n 
C29 C30 U10 sing 833 n n 
C29 C31 U10 sing 834 n n 
C30 H301 U10 sing 835 n n 
C30 H302 U10 sing 836 n n 
C30 H303 U10 sing 837 n n 
C31 C32 U10 sing 838 n n 
C31 H311 U10 sing 839 n n 
C31 H312 U10 sing 840 n n 
C32 C33 U10 sing 841 n n 
C32 H321 U10 sing 842 n n 
C32 H322 U10 sing 843 n n 
C33 C34 U10 doub 844 e n 
C33 H33 U10 sing 845 n n 
C34 C35 U10 sing 846 n n 
C34 C36 U10 sing 847 n n 
C35 H351 U10 sing 848 n n 
C35 H352 U10 sing 849 n n 
C35 H353 U10 sing 850 n n 
C36 C37 U10 sing 851 n n 
C36 H361 U10 sing 852 n n 
C36 H362 U10 sing 853 n n 
C37 C38 U10 sing 854 n n 
C37 H371 U10 sing 855 n n 
C37 H372 U10 sing 856 n n 
C38 C39 U10 doub 857 e n 
C38 H38 U10 sing 858 n n 
C39 C40 U10 sing 859 n n 
C39 C41 U10 sing 860 n n 
C40 H401 U10 sing 861 n n 
C40 H402 U10 sing 862 n n 
C40 H403 U10 sing 863 n n 
C41 C42 U10 sing 864 n n 
C41 H411 U10 sing 865 n n 
C41 H412 U10 sing 866 n n 
C42 C43 U10 sing 867 n n 
C42 H421 U10 sing 868 n n 
C42 H422 U10 sing 869 n n 
C43 C44 U10 doub 870 e n 
C43 H43 U10 sing 871 n n 
C44 C45 U10 sing 872 n n 
C44 C46 U10 sing 873 n n 
C45 H451 U10 sing 874 n n 
C45 H452 U10 sing 875 n n 
C45 H453 U10 sing 876 n n 
C46 C47 U10 sing 877 n n 
C46 H461 U10 sing 878 n n 
C46 H462 U10 sing 879 n n 
C47 C48 U10 sing 880 n n 
C47 H471 U10 sing 881 n n 
C47 H472 U10 sing 882 n n 
C48 C49 U10 doub 883 e n 
C48 H48 U10 sing 884 n n 
C49 C50 U10 sing 885 n n 
C49 C51 U10 sing 886 n n 
C50 H501 U10 sing 887 n n 
C50 H502 U10 sing 888 n n 
C50 H503 U10 sing 889 n n 
C51 C52 U10 sing 890 n n 
C51 H511 U10 sing 891 n n 
C51 H512 U10 sing 892 n n 
C52 C53 U10 sing 893 n n 
C52 H521 U10 sing 894 n n 
C52 H522 U10 sing 895 n n 
C53 C54 U10 doub 896 n n 
C53 H53 U10 sing 897 n n 
C54 C55 U10 sing 898 n n 
C54 C56 U10 sing 899 n n 
C55 H551 U10 sing 900 n n 
C55 H552 U10 sing 901 n n 
C55 H553 U10 sing 902 n n 
C56 H561 U10 sing 903 n n 
C56 H562 U10 sing 904 n n 
C56 H563 U10 sing 905 n n 
#
_atom_sites.entry_id                     1PST 
_atom_sites.fract_transf_matrix[1][1]    0.007246 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012903 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007052 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 BCL L 1 2 2 BCL BCL . 
E 4 BCL L 1 4 4 BCL BCL . 
F 5 BPH L 1 271 6 BPH BPH . 
G 6 U10 L 1 272 9 U10 U10 . 
H 7 FE M 1 302 7 FE FE . 
I 4 BCL M 1 1 1 BCL BCL . 
J 5 BPH M 1 3 3 BPH BPH . 
K 5 BPH M 1 5 5 BPH BPH . 
L 6 U10 M 1 303 8 U10 U10 . 
M 8 CRT M 1 304 10 CRT CRT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 U10 . . . L 6 31.949 26.26 61.222 1 44.64 ? C1 U10 303 M 1 
HETATM 2 C C2 U10 . . . L 6 31.971 26.373 62.616 1 47.66 ? C2 U10 303 M 1 
HETATM 3 C C3 U10 . . . L 6 31.814 25.254 63.432 1 48.75 ? C3 U10 303 M 1 
HETATM 4 C C4 U10 . . . L 6 31.637 23.999 62.863 1 49.77 ? C4 U10 303 M 1 
HETATM 5 C C5 U10 . . . L 6 31.624 23.875 61.473 1 45.47 ? C5 U10 303 M 1 
HETATM 6 C C6 U10 . . . L 6 31.779 25.001 60.626 1 43.18 ? C6 U10 303 M 1 
HETATM 7 C C1M U10 . . . L 6 32.083 27.506 60.368 1 47.28 ? C1M U10 303 M 1 
HETATM 8 C C3M U10 . . . L 6 33.123 25.555 65.396 1 47.98 ? C3M U10 303 M 1 
HETATM 9 C C4M U10 . . . L 6 32.479 22.347 64.475 1 54.49 ? C4M U10 303 M 1 
HETATM 10 C C7 U10 . . . L 6 31.756 24.908 59.089 1 37.06 ? C7 U10 303 M 1 
HETATM 11 C C8 U10 . . . L 6 32.841 24.035 58.671 1 27.6 ? C8 U10 303 M 1 
HETATM 12 C C9 U10 . . . L 6 33.849 24.36 57.791 1 23.86 ? C9 U10 303 M 1 
HETATM 13 C C10 U10 . . . L 6 34.876 23.294 57.483 1 22.98 ? C10 U10 303 M 1 
HETATM 14 C C11 U10 . . . L 6 33.973 25.698 57.079 1 26.14 ? C11 U10 303 M 1 
HETATM 15 C C12 U10 . . . L 6 33.754 25.544 55.558 1 26.03 ? C12 U10 303 M 1 
HETATM 16 C C13 U10 . . . L 6 34.677 26.345 54.774 1 16.56 ? C13 U10 303 M 1 
HETATM 17 C C14 U10 . . . L 6 34.274 27.383 53.952 1 14.59 ? C14 U10 303 M 1 
HETATM 18 C C15 U10 . . . L 6 35.333 28.147 53.197 1 14.71 ? C15 U10 303 M 1 
HETATM 19 C C16 U10 . . . L 6 32.83 27.838 53.766 1 15.92 ? C16 U10 303 M 1 
HETATM 20 C C17 U10 . . . L 6 31.972 26.987 52.823 1 22.96 ? C17 U10 303 M 1 
HETATM 21 C C18 U10 . . . L 6 32.465 26.97 51.438 1 23.79 ? C18 U10 303 M 1 
HETATM 22 C C19 U10 . . . L 6 31.999 26.13 50.437 1 19.79 ? C19 U10 303 M 1 
HETATM 23 C C20 U10 . . . L 6 32.684 26.196 49.092 1 27.13 ? C20 U10 303 M 1 
HETATM 24 C C21 U10 . . . L 6 30.919 25.085 50.643 1 18.35 ? C21 U10 303 M 1 
HETATM 25 C C22 U10 . . . L 6 29.962 24.922 49.482 1 16.86 ? C22 U10 303 M 1 
HETATM 26 C C23 U10 . . . L 6 28.805 25.743 49.744 1 19.19 ? C23 U10 303 M 1 
HETATM 27 C C24 U10 . . . L 6 27.51 25.25 49.769 1 21.15 ? C24 U10 303 M 1 
HETATM 28 C C25 U10 . . . L 6 26.378 26.222 50.056 1 19.05 ? C25 U10 303 M 1 
HETATM 29 C C26 U10 . . . L 6 27.176 23.788 49.514 1 22.02 ? C26 U10 303 M 1 
HETATM 30 C C27 U10 . . . L 6 25.763 23.591 48.974 1 29.85 ? C27 U10 303 M 1 
HETATM 31 C C28 U10 . . . L 6 25.792 22.584 47.933 1 33.36 ? C28 U10 303 M 1 
HETATM 32 C C29 U10 . . . L 6 24.68 22.113 47.253 1 36.06 ? C29 U10 303 M 1 
HETATM 33 C C30 U10 . . . L 6 24.971 21.02 46.239 1 40.7 ? C30 U10 303 M 1 
HETATM 34 C C31 U10 . . . L 6 23.232 22.595 47.499 1 36.84 ? C31 U10 303 M 1 
HETATM 35 C C32 U10 . . . L 6 22.219 21.539 48.036 1 32.65 ? C32 U10 303 M 1 
HETATM 36 C C33 U10 . . . L 6 21.075 22.183 48.696 1 26.84 ? C33 U10 303 M 1 
HETATM 37 C C34 U10 . . . L 6 19.842 21.581 48.929 1 24.77 ? C34 U10 303 M 1 
HETATM 38 C C35 U10 . . . L 6 18.747 22.392 49.603 1 24.61 ? C35 U10 303 M 1 
HETATM 39 C C36 U10 . . . L 6 19.543 20.145 48.517 1 26.73 ? C36 U10 303 M 1 
HETATM 40 C C37 U10 . . . L 6 18.073 19.708 48.496 1 25.32 ? C37 U10 303 M 1 
HETATM 41 C C38 U10 . . . L 6 18.049 18.445 47.774 1 28.56 ? C38 U10 303 M 1 
HETATM 42 C C39 U10 . . . L 6 16.939 17.886 47.162 1 31.3 ? C39 U10 303 M 1 
HETATM 43 C C40 U10 . . . L 6 17.149 16.559 46.441 1 28.32 ? C40 U10 303 M 1 
HETATM 44 C C41 U10 . . . L 6 15.56 18.555 47.183 1 33.45 ? C41 U10 303 M 1 
HETATM 45 C C42 U10 . . . L 6 14.487 17.851 46.341 1 36.1 ? C42 U10 303 M 1 
HETATM 46 C C43 U10 . . . L 6 13.611 17.07 47.204 1 35.91 ? C43 U10 303 M 1 
HETATM 47 C C44 U10 . . . L 6 13.442 15.646 46.99 1 31.69 ? C44 U10 303 M 1 
HETATM 48 O O2 U10 . . . L 6 32.16 27.473 63.136 1 48.8 ? O2 U10 303 M 1 
HETATM 49 O O3 U10 . . . L 6 31.843 25.377 64.806 1 46.59 ? O3 U10 303 M 1 
HETATM 50 O O4 U10 . . . L 6 31.429 22.883 63.675 1 53.29 ? O4 U10 303 M 1 
HETATM 51 O O5 U10 . . . L 6 31.458 22.75 61.007 1 41.39 ? O5 U10 303 M 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           51 
#