data_1PST # _model_server_result.job_id -2yzKmqXoMMIz5-P-SxFCA _model_server_result.datetime_utc '2025-02-27 01:32:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pst # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":304}' # _entry.id 1PST # _exptl.entry_id 1PST _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 596.925 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPIRILLOXANTHIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PST _cell.length_a 138 _cell.length_b 77.5 _cell.length_c 141.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PST _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG BCL . L BCL 2 1_555 A NE2 HIS 169 L HIS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc2 E MG BCL . L BCL 4 1_555 A NE2 HIS 149 L HIS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc3 A NE2 HIS 186 L HIS 190 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc4 A NE2 HIS 226 L HIS 230 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc5 I MG BCL . M BCL 1 1_555 B NE2 HIS 177 M HIS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc6 B NE2 HIS 214 M HIS 219 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc7 B OE1 GLU 229 M GLU 234 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc8 B OE2 GLU 229 M GLU 234 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc9 B NE2 HIS 261 M HIS 266 1_555 H FE FE . M FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? # _chem_comp.formula 'C42 H60 O2' _chem_comp.formula_weight 596.925 _chem_comp.id CRT _chem_comp.mon_nstd_flag . _chem_comp.name SPIRILLOXANTHIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RHODOVIOLASCIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1M O1 CRT sing 364 n n C1M H1M1 CRT sing 365 n n C1M H1M2 CRT sing 366 n n C1M H1M3 CRT sing 367 n n O1 C1 CRT sing 368 n n C1 C2 CRT sing 369 n n C1 C3 CRT sing 370 n n C1 C4 CRT sing 371 n n C2 H21A CRT sing 372 n n C2 H22A CRT sing 373 n n C2 H23 CRT sing 374 n n C3 H31A CRT sing 375 n n C3 H32A CRT sing 376 n n C3 H33 CRT sing 377 n n C4 C5 CRT sing 378 n n C4 H41 CRT sing 379 n n C4 H42 CRT sing 380 n n C5 C6 CRT doub 381 e n C5 H5 CRT sing 382 n n C6 C7 CRT sing 383 n n C6 H6 CRT sing 384 n n C7 C8 CRT sing 385 n n C7 C9 CRT doub 386 e n C8 H81 CRT sing 387 n n C8 H82 CRT sing 388 n n C8 H83 CRT sing 389 n n C9 C10 CRT sing 390 n n C9 H9 CRT sing 391 n n C10 C11 CRT doub 392 e n C10 H10 CRT sing 393 n n C11 C12 CRT sing 394 n n C11 H11 CRT sing 395 n n C12 C13 CRT sing 396 n n C12 C14 CRT doub 397 e n C13 H131 CRT sing 398 n n C13 H132 CRT sing 399 n n C13 H133 CRT sing 400 n n C14 C15 CRT sing 401 n n C14 H14 CRT sing 402 n n C15 C16 CRT doub 403 e n C15 H15 CRT sing 404 n n C16 C17 CRT sing 405 n n C16 H16 CRT sing 406 n n C17 C18 CRT sing 407 n n C17 C19 CRT doub 408 e n C18 H181 CRT sing 409 n n C18 H182 CRT sing 410 n n C18 H183 CRT sing 411 n n C19 C20 CRT sing 412 n n C19 H19 CRT sing 413 n n C20 C21 CRT doub 414 z n C20 H20 CRT sing 415 n n C21 C22 CRT sing 416 n n C21 H21 CRT sing 417 n n C22 C23 CRT doub 418 e n C22 H22 CRT sing 419 n n C23 C24 CRT sing 420 n n C23 C25 CRT sing 421 n n C24 H241 CRT sing 422 n n C24 H242 CRT sing 423 n n C24 H243 CRT sing 424 n n C25 C26 CRT doub 425 e n C25 H25 CRT sing 426 n n C26 C27 CRT sing 427 n n C26 H26 CRT sing 428 n n C27 C28 CRT doub 429 e n C27 H27 CRT sing 430 n n C28 C29 CRT sing 431 n n C28 C30 CRT sing 432 n n C29 H291 CRT sing 433 n n C29 H292 CRT sing 434 n n C29 H293 CRT sing 435 n n C30 C31 CRT doub 436 e n C30 H30 CRT sing 437 n n C31 C32 CRT sing 438 n n C31 H31 CRT sing 439 n n C32 C33 CRT doub 440 e n C32 H32 CRT sing 441 n n C33 C34 CRT sing 442 n n C33 C35 CRT sing 443 n n C34 H341 CRT sing 444 n n C34 H342 CRT sing 445 n n C34 H343 CRT sing 446 n n C35 C36 CRT doub 447 e n C35 H35 CRT sing 448 n n C36 C37 CRT sing 449 n n C36 H36 CRT sing 450 n n C37 C38 CRT sing 451 n n C37 H371 CRT sing 452 n n C37 H372 CRT sing 453 n n C38 C39 CRT sing 454 n n C38 C40 CRT sing 455 n n C38 O2 CRT sing 456 n n C39 H391 CRT sing 457 n n C39 H392 CRT sing 458 n n C39 H393 CRT sing 459 n n C40 H401 CRT sing 460 n n C40 H402 CRT sing 461 n n C40 H403 CRT sing 462 n n O2 C2M CRT sing 463 n n C2M H2M1 CRT sing 464 n n C2M H2M2 CRT sing 465 n n C2M H2M3 CRT sing 466 n n # _atom_sites.entry_id 1PST _atom_sites.fract_transf_matrix[1][1] 0.007246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BCL L 1 2 2 BCL BCL . E 4 BCL L 1 4 4 BCL BCL . F 5 BPH L 1 271 6 BPH BPH . G 6 U10 L 1 272 9 U10 U10 . H 7 FE M 1 302 7 FE FE . I 4 BCL M 1 1 1 BCL BCL . J 5 BPH M 1 3 3 BPH BPH . K 5 BPH M 1 5 5 BPH BPH . L 6 U10 M 1 303 8 U10 U10 . M 8 CRT M 1 304 10 CRT CRT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1M CRT . . . M 8 56.204 65.119 65.879 1 40.89 ? C1M CRT 304 M 1 HETATM 2 O O1 CRT . . . M 8 54.805 65.064 65.907 1 42.26 ? O1 CRT 304 M 1 HETATM 3 C C1 CRT . . . M 8 54.004 64.235 66.782 1 42.66 ? C1 CRT 304 M 1 HETATM 4 C C2 CRT . . . M 8 52.61 64.932 66.896 1 37.94 ? C2 CRT 304 M 1 HETATM 5 C C3 CRT . . . M 8 54.635 64.084 68.208 1 40.69 ? C3 CRT 304 M 1 HETATM 6 C C4 CRT . . . M 8 53.908 62.797 66.187 1 41.97 ? C4 CRT 304 M 1 HETATM 7 C C5 CRT . . . M 8 52.783 62.642 65.141 1 41.15 ? C5 CRT 304 M 1 HETATM 8 C C6 CRT . . . M 8 52.79 61.713 63.899 1 38.36 ? C6 CRT 304 M 1 HETATM 9 C C7 CRT . . . M 8 51.753 61.877 62.997 1 36.09 ? C7 CRT 304 M 1 HETATM 10 C C8 CRT . . . M 8 50.888 63.165 63.003 1 30.76 ? C8 CRT 304 M 1 HETATM 11 C C9 CRT . . . M 8 51.535 60.981 61.968 1 33.04 ? C9 CRT 304 M 1 HETATM 12 C C10 CRT . . . M 8 52.287 59.7 61.593 1 22.81 ? C10 CRT 304 M 1 HETATM 13 C C11 CRT . . . M 8 51.691 58.987 60.363 1 20.86 ? C11 CRT 304 M 1 HETATM 14 C C12 CRT . . . M 8 52.18 57.817 59.848 1 20.77 ? C12 CRT 304 M 1 HETATM 15 C C13 CRT . . . M 8 53.273 57.041 60.58 1 26.16 ? C13 CRT 304 M 1 HETATM 16 C C14 CRT . . . M 8 51.436 57.221 58.861 1 18.67 ? C14 CRT 304 M 1 HETATM 17 C C15 CRT . . . M 8 51.832 55.875 58.205 1 17.17 ? C15 CRT 304 M 1 HETATM 18 C C16 CRT . . . M 8 50.758 55.125 57.401 1 16.14 ? C16 CRT 304 M 1 HETATM 19 C C17 CRT . . . M 8 50.928 54.055 56.547 1 13.51 ? C17 CRT 304 M 1 HETATM 20 C C18 CRT . . . M 8 49.798 53.871 55.523 1 8.96 ? C18 CRT 304 M 1 HETATM 21 C C19 CRT . . . M 8 52.177 53.505 56.321 1 6.86 ? C19 CRT 304 M 1 HETATM 22 C C20 CRT . . . M 8 52.333 52.25 55.43 1 5.82 ? C20 CRT 304 M 1 HETATM 23 C C21 CRT . . . M 8 53.645 51.929 54.687 1 9.46 ? C21 CRT 304 M 1 HETATM 24 C C22 CRT . . . M 8 54.128 50.482 54.455 1 6.17 ? C22 CRT 304 M 1 HETATM 25 C C23 CRT . . . M 8 55.467 50.205 54.298 1 9.15 ? C23 CRT 304 M 1 HETATM 26 C C24 CRT . . . M 8 56.44 51.187 53.618 1 18.4 ? C24 CRT 304 M 1 HETATM 27 C C25 CRT . . . M 8 55.829 48.899 54.446 1 11.74 ? C25 CRT 304 M 1 HETATM 28 C C26 CRT . . . M 8 57.285 48.386 54.324 1 13.57 ? C26 CRT 304 M 1 HETATM 29 C C27 CRT . . . M 8 58.465 48.777 55.235 1 13.27 ? C27 CRT 304 M 1 HETATM 30 C C28 CRT . . . M 8 59.677 48.149 55.044 1 14.9 ? C28 CRT 304 M 1 HETATM 31 C C29 CRT . . . M 8 59.71 46.654 54.665 1 16.38 ? C29 CRT 304 M 1 HETATM 32 C C30 CRT . . . M 8 60.712 48.634 55.793 1 15.69 ? C30 CRT 304 M 1 HETATM 33 C C31 CRT . . . M 8 62.19 48.296 55.516 1 18.61 ? C31 CRT 304 M 1 HETATM 34 C C32 CRT . . . M 8 62.988 49.31 54.658 1 26.91 ? C32 CRT 304 M 1 HETATM 35 C C33 CRT . . . M 8 64.336 49.565 54.791 1 26.77 ? C33 CRT 304 M 1 HETATM 36 C C34 CRT . . . M 8 64.946 50.931 54.427 1 24.16 ? C34 CRT 304 M 1 HETATM 37 C C35 CRT . . . M 8 65.169 48.837 55.846 1 29.75 ? C35 CRT 304 M 1 HETATM 38 C C36 CRT . . . M 8 66.658 48.803 55.596 1 29.62 ? C36 CRT 304 M 1 HETATM 39 C C37 CRT . . . M 8 67.224 47.752 56.555 1 35.26 ? C37 CRT 304 M 1 HETATM 40 C C38 CRT . . . M 8 68.481 47.251 56.761 1 37.12 ? C38 CRT 304 M 1 HETATM 41 C C39 CRT . . . M 8 69.733 47.665 55.961 1 39.16 ? C39 CRT 304 M 1 HETATM 42 C C40 CRT . . . M 8 68.794 46.152 57.794 1 38.45 ? C40 CRT 304 M 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #