data_1PT9 # _model_server_result.job_id oK94kpomUEhM49XjJF9sCA _model_server_result.datetime_utc '2024-10-10 13:29:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pt9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":230}' # _entry.id 1PT9 # _exptl.entry_id 1PT9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PT9 _cell.length_a 57.4 _cell.length_b 57.4 _cell.length_c 251.13 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 PISA dimeric 2 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 A,C,D,E,I 3 1,2 B,F,G,H,J 3 3,4 A,C,D,E,I 4 1 B,F,G,H,J 4 3 A,C,D,E,I 5 1,2 B,F,G,H,J 6 1,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/4 0 -1 0 -1 0 0 0 0 -1 57.4 57.4 62.7825 3 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 57.4 0 0 4 'crystal symmetry operation' 8_655 -y+1,-x,-z+1/4 0 -1 0 -1 0 0 0 0 -1 57.4 0 62.7825 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1PT9 _atom_sites.fract_transf_matrix[1][1] 0.017422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 208 206 SO4 SO4 . D 3 TAP A 1 300 300 TAP NAP . E 4 GOL A 1 220 220 GOL GOL . F 2 SO4 B 1 210 210 SO4 SO4 . G 3 TAP B 1 301 300 TAP NAP . H 4 GOL B 1 230 230 GOL GOL . I 5 HOH A 1 301 2 HOH WAT . I 5 HOH A 2 302 8 HOH WAT . I 5 HOH A 3 303 9 HOH WAT . I 5 HOH A 4 304 10 HOH WAT . I 5 HOH A 5 305 15 HOH WAT . I 5 HOH A 6 306 16 HOH WAT . I 5 HOH A 7 307 17 HOH WAT . I 5 HOH A 8 308 18 HOH WAT . I 5 HOH A 9 309 21 HOH WAT . I 5 HOH A 10 310 23 HOH WAT . I 5 HOH A 11 311 24 HOH WAT . I 5 HOH A 12 312 25 HOH WAT . I 5 HOH A 13 313 28 HOH WAT . I 5 HOH A 14 314 29 HOH WAT . I 5 HOH A 15 315 32 HOH WAT . I 5 HOH A 16 316 34 HOH WAT . I 5 HOH A 17 317 35 HOH WAT . I 5 HOH A 18 318 36 HOH WAT . I 5 HOH A 19 319 37 HOH WAT . I 5 HOH A 20 320 38 HOH WAT . I 5 HOH A 21 321 39 HOH WAT . I 5 HOH A 22 322 43 HOH WAT . I 5 HOH A 23 323 44 HOH WAT . I 5 HOH A 24 324 45 HOH WAT . I 5 HOH A 25 325 47 HOH WAT . I 5 HOH A 26 326 48 HOH WAT . I 5 HOH A 27 327 52 HOH WAT . I 5 HOH A 28 328 53 HOH WAT . I 5 HOH A 29 329 55 HOH WAT . I 5 HOH A 30 330 60 HOH WAT . I 5 HOH A 31 331 62 HOH WAT . I 5 HOH A 32 332 63 HOH WAT . I 5 HOH A 33 333 65 HOH WAT . I 5 HOH A 34 334 66 HOH WAT . I 5 HOH A 35 335 68 HOH WAT . I 5 HOH A 36 336 74 HOH WAT . I 5 HOH A 37 337 76 HOH WAT . I 5 HOH A 38 338 77 HOH WAT . I 5 HOH A 39 339 82 HOH WAT . I 5 HOH A 40 340 87 HOH WAT . I 5 HOH A 41 341 90 HOH WAT . I 5 HOH A 42 342 92 HOH WAT . I 5 HOH A 43 343 94 HOH WAT . I 5 HOH A 44 344 96 HOH WAT . I 5 HOH A 45 345 97 HOH WAT . I 5 HOH A 46 346 102 HOH WAT . I 5 HOH A 47 347 103 HOH WAT . I 5 HOH A 48 348 104 HOH WAT . I 5 HOH A 49 349 106 HOH WAT . I 5 HOH A 50 350 108 HOH WAT . I 5 HOH A 51 351 109 HOH WAT . I 5 HOH A 52 352 110 HOH WAT . I 5 HOH A 53 353 111 HOH WAT . I 5 HOH A 54 354 114 HOH WAT . I 5 HOH A 55 355 115 HOH WAT . I 5 HOH A 56 356 116 HOH WAT . I 5 HOH A 57 357 119 HOH WAT . I 5 HOH A 58 358 122 HOH WAT . I 5 HOH A 59 359 123 HOH WAT . I 5 HOH A 60 360 124 HOH WAT . I 5 HOH A 61 361 126 HOH WAT . I 5 HOH A 62 362 129 HOH WAT . I 5 HOH A 63 363 130 HOH WAT . I 5 HOH A 64 364 131 HOH WAT . I 5 HOH A 65 365 132 HOH WAT . I 5 HOH A 66 366 133 HOH WAT . I 5 HOH A 67 367 138 HOH WAT . I 5 HOH A 68 368 139 HOH WAT . I 5 HOH A 69 369 142 HOH WAT . I 5 HOH A 70 370 144 HOH WAT . I 5 HOH A 71 371 146 HOH WAT . I 5 HOH A 72 372 148 HOH WAT . I 5 HOH A 73 373 150 HOH WAT . I 5 HOH A 74 374 152 HOH WAT . I 5 HOH A 75 375 153 HOH WAT . I 5 HOH A 76 376 154 HOH WAT . I 5 HOH A 77 377 155 HOH WAT . I 5 HOH A 78 378 157 HOH WAT . I 5 HOH A 79 379 158 HOH WAT . I 5 HOH A 80 380 159 HOH WAT . I 5 HOH A 81 381 163 HOH WAT . I 5 HOH A 82 382 164 HOH WAT . I 5 HOH A 83 383 166 HOH WAT . I 5 HOH A 84 384 167 HOH WAT . I 5 HOH A 85 385 168 HOH WAT . I 5 HOH A 86 386 171 HOH WAT . I 5 HOH A 87 387 173 HOH WAT . I 5 HOH A 88 388 174 HOH WAT . I 5 HOH A 89 389 175 HOH WAT . J 5 HOH B 1 302 1 HOH WAT . J 5 HOH B 2 303 3 HOH WAT . J 5 HOH B 3 304 4 HOH WAT . J 5 HOH B 4 305 5 HOH WAT . J 5 HOH B 5 306 6 HOH WAT . J 5 HOH B 6 307 7 HOH WAT . J 5 HOH B 7 308 11 HOH WAT . J 5 HOH B 8 309 12 HOH WAT . J 5 HOH B 9 310 13 HOH WAT . J 5 HOH B 10 311 14 HOH WAT . J 5 HOH B 11 312 19 HOH WAT . J 5 HOH B 12 313 20 HOH WAT . J 5 HOH B 13 314 22 HOH WAT . J 5 HOH B 14 315 26 HOH WAT . J 5 HOH B 15 316 27 HOH WAT . J 5 HOH B 16 317 30 HOH WAT . J 5 HOH B 17 318 31 HOH WAT . J 5 HOH B 18 319 33 HOH WAT . J 5 HOH B 19 320 40 HOH WAT . J 5 HOH B 20 321 41 HOH WAT . J 5 HOH B 21 322 42 HOH WAT . J 5 HOH B 22 323 49 HOH WAT . J 5 HOH B 23 324 54 HOH WAT . J 5 HOH B 24 325 58 HOH WAT . J 5 HOH B 25 326 61 HOH WAT . J 5 HOH B 26 327 64 HOH WAT . J 5 HOH B 27 328 67 HOH WAT . J 5 HOH B 28 329 69 HOH WAT . J 5 HOH B 29 330 70 HOH WAT . J 5 HOH B 30 331 71 HOH WAT . J 5 HOH B 31 332 72 HOH WAT . J 5 HOH B 32 333 73 HOH WAT . J 5 HOH B 33 334 75 HOH WAT . J 5 HOH B 34 335 78 HOH WAT . J 5 HOH B 35 336 79 HOH WAT . J 5 HOH B 36 337 80 HOH WAT . J 5 HOH B 37 338 81 HOH WAT . J 5 HOH B 38 339 83 HOH WAT . J 5 HOH B 39 340 84 HOH WAT . J 5 HOH B 40 341 85 HOH WAT . J 5 HOH B 41 342 86 HOH WAT . J 5 HOH B 42 343 88 HOH WAT . J 5 HOH B 43 344 89 HOH WAT . J 5 HOH B 44 345 91 HOH WAT . J 5 HOH B 45 346 93 HOH WAT . J 5 HOH B 46 347 95 HOH WAT . J 5 HOH B 47 348 98 HOH WAT . J 5 HOH B 48 349 99 HOH WAT . J 5 HOH B 49 350 100 HOH WAT . J 5 HOH B 50 351 101 HOH WAT . J 5 HOH B 51 352 105 HOH WAT . J 5 HOH B 52 353 107 HOH WAT . J 5 HOH B 53 354 112 HOH WAT . J 5 HOH B 54 355 113 HOH WAT . J 5 HOH B 55 356 117 HOH WAT . J 5 HOH B 56 357 118 HOH WAT . J 5 HOH B 57 358 120 HOH WAT . J 5 HOH B 58 359 121 HOH WAT . J 5 HOH B 59 360 125 HOH WAT . J 5 HOH B 60 361 127 HOH WAT . J 5 HOH B 61 362 128 HOH WAT . J 5 HOH B 62 363 134 HOH WAT . J 5 HOH B 63 364 135 HOH WAT . J 5 HOH B 64 365 136 HOH WAT . J 5 HOH B 65 366 137 HOH WAT . J 5 HOH B 66 367 140 HOH WAT . J 5 HOH B 67 368 141 HOH WAT . J 5 HOH B 68 369 143 HOH WAT . J 5 HOH B 69 370 145 HOH WAT . J 5 HOH B 70 371 147 HOH WAT . J 5 HOH B 71 372 149 HOH WAT . J 5 HOH B 72 373 151 HOH WAT . J 5 HOH B 73 374 156 HOH WAT . J 5 HOH B 74 375 160 HOH WAT . J 5 HOH B 75 376 161 HOH WAT . J 5 HOH B 76 377 162 HOH WAT . J 5 HOH B 77 378 165 HOH WAT . J 5 HOH B 78 379 169 HOH WAT . J 5 HOH B 79 380 170 HOH WAT . J 5 HOH B 80 381 172 HOH WAT . J 5 HOH B 81 382 176 HOH WAT . J 5 HOH B 82 383 177 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 7.106 28.383 14.205 1 63.48 ? C1 GOL 230 B 1 HETATM 2 O O1 GOL . . . H 4 7.438 27.079 13.713 1 62.1 ? O1 GOL 230 B 1 HETATM 3 C C2 GOL . . . H 4 7.371 28.504 15.726 1 65.09 ? C2 GOL 230 B 1 HETATM 4 O O2 GOL . . . H 4 7.011 29.826 16.16 1 67.23 ? O2 GOL 230 B 1 HETATM 5 C C3 GOL . . . H 4 8.864 28.259 16.039 1 64.58 ? C3 GOL 230 B 1 HETATM 6 O O3 GOL . . . H 4 9.282 26.949 15.633 1 64.4 ? O3 GOL 230 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #