data_1PTJ # _model_server_result.job_id lCZWjBCVM9LLF8PejcQyXQ _model_server_result.datetime_utc '2024-11-24 13:53:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ptj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":300}' # _entry.id 1PTJ # _exptl.entry_id 1PTJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PTJ _cell.length_a 72.089 _cell.length_b 74.698 _cell.length_c 205.014 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PTJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 250 n n PA O2A NAP sing 251 n n PA O5B NAP sing 252 n n PA O3 NAP sing 253 n n O2A HOA2 NAP sing 254 n n O5B C5B NAP sing 255 n n C5B C4B NAP sing 256 n n C5B H51A NAP sing 257 n n C5B H52A NAP sing 258 n n C4B O4B NAP sing 259 n n C4B C3B NAP sing 260 n n C4B H4B NAP sing 261 n n O4B C1B NAP sing 262 n n C3B O3B NAP sing 263 n n C3B C2B NAP sing 264 n n C3B H3B NAP sing 265 n n O3B HO3A NAP sing 266 n n C2B O2B NAP sing 267 n n C2B C1B NAP sing 268 n n C2B H2B NAP sing 269 n n O2B P2B NAP sing 270 n n C1B N9A NAP sing 271 n n C1B H1B NAP sing 272 n n N9A C8A NAP sing 273 n y N9A C4A NAP sing 274 n y C8A N7A NAP doub 275 n y C8A H8A NAP sing 276 n n N7A C5A NAP sing 277 n y C5A C6A NAP sing 278 n y C5A C4A NAP doub 279 n y C6A N6A NAP sing 280 n n C6A N1A NAP doub 281 n y N6A H61A NAP sing 282 n n N6A H62A NAP sing 283 n n N1A C2A NAP sing 284 n y C2A N3A NAP doub 285 n y C2A H2A NAP sing 286 n n N3A C4A NAP sing 287 n y O3 PN NAP sing 288 n n PN O1N NAP doub 289 n n PN O2N NAP sing 290 n n PN O5D NAP sing 291 n n O5D C5D NAP sing 292 n n C5D C4D NAP sing 293 n n C5D H51N NAP sing 294 n n C5D H52N NAP sing 295 n n C4D O4D NAP sing 296 n n C4D C3D NAP sing 297 n n C4D H4D NAP sing 298 n n O4D C1D NAP sing 299 n n C3D O3D NAP sing 300 n n C3D C2D NAP sing 301 n n C3D H3D NAP sing 302 n n O3D HO3N NAP sing 303 n n C2D O2D NAP sing 304 n n C2D C1D NAP sing 305 n n C2D H2D NAP sing 306 n n O2D HO2N NAP sing 307 n n C1D N1N NAP sing 308 n n C1D H1D NAP sing 309 n n N1N C2N NAP sing 310 n y N1N C6N NAP doub 311 n y C2N C3N NAP doub 312 n y C2N H2N NAP sing 313 n n C3N C7N NAP sing 314 n n C3N C4N NAP sing 315 n y C7N O7N NAP doub 316 n n C7N N7N NAP sing 317 n n N7N H71N NAP sing 318 n n N7N H72N NAP sing 319 n n C4N C5N NAP doub 320 n y C4N H4N NAP sing 321 n n C5N C6N NAP sing 322 n y C5N H5N NAP sing 323 n n C6N H6N NAP sing 324 n n P2B O1X NAP doub 325 n n P2B O2X NAP sing 326 n n P2B O3X NAP sing 327 n n O2X HOP2 NAP sing 328 n n O3X HOP3 NAP sing 329 n n # _atom_sites.entry_id 1PTJ _atom_sites.fract_transf_matrix[1][1] 0.013872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 SND A 1 500 500 SND SND . E 4 GOL A 1 402 402 GOL GOL . F 4 GOL A 1 403 403 GOL GOL . G 4 GOL B 1 401 401 GOL GOL . H 5 NAP C 1 300 300 NAP NAP . I 6 HOH A 1 501 1 HOH HOH . I 6 HOH A 2 502 2 HOH HOH . I 6 HOH A 3 503 5 HOH HOH . I 6 HOH A 4 504 13 HOH HOH . I 6 HOH A 5 505 14 HOH HOH . I 6 HOH A 6 506 19 HOH HOH . I 6 HOH A 7 507 25 HOH HOH . I 6 HOH A 8 508 36 HOH HOH . I 6 HOH A 9 509 39 HOH HOH . I 6 HOH A 10 510 44 HOH HOH . I 6 HOH A 11 511 45 HOH HOH . I 6 HOH A 12 512 48 HOH HOH . I 6 HOH A 13 513 62 HOH HOH . I 6 HOH A 14 514 63 HOH HOH . I 6 HOH A 15 515 71 HOH HOH . I 6 HOH A 16 516 76 HOH HOH . I 6 HOH A 17 517 78 HOH HOH . I 6 HOH A 18 518 81 HOH HOH . I 6 HOH A 19 519 82 HOH HOH . I 6 HOH A 20 520 87 HOH HOH . I 6 HOH A 21 521 89 HOH HOH . I 6 HOH A 22 522 92 HOH HOH . I 6 HOH A 23 523 93 HOH HOH . I 6 HOH A 24 524 94 HOH HOH . I 6 HOH A 25 525 95 HOH HOH . I 6 HOH A 26 526 96 HOH HOH . I 6 HOH A 27 527 99 HOH HOH . I 6 HOH A 28 528 100 HOH HOH . I 6 HOH A 29 529 104 HOH HOH . I 6 HOH A 30 530 107 HOH HOH . I 6 HOH A 31 531 114 HOH HOH . I 6 HOH A 32 532 115 HOH HOH . I 6 HOH A 33 533 125 HOH HOH . I 6 HOH A 34 534 127 HOH HOH . I 6 HOH A 35 535 128 HOH HOH . I 6 HOH A 36 536 133 HOH HOH . I 6 HOH A 37 537 137 HOH HOH . I 6 HOH A 38 538 140 HOH HOH . I 6 HOH A 39 539 142 HOH HOH . I 6 HOH A 40 540 143 HOH HOH . I 6 HOH A 41 541 144 HOH HOH . I 6 HOH A 42 542 148 HOH HOH . J 6 HOH B 1 402 3 HOH HOH . J 6 HOH B 2 403 4 HOH HOH . J 6 HOH B 3 404 6 HOH HOH . J 6 HOH B 4 405 7 HOH HOH . J 6 HOH B 5 406 8 HOH HOH . J 6 HOH B 6 407 9 HOH HOH . J 6 HOH B 7 408 10 HOH HOH . J 6 HOH B 8 409 15 HOH HOH . J 6 HOH B 9 410 16 HOH HOH . J 6 HOH B 10 411 18 HOH HOH . J 6 HOH B 11 412 20 HOH HOH . J 6 HOH B 12 413 21 HOH HOH . J 6 HOH B 13 414 24 HOH HOH . J 6 HOH B 14 415 28 HOH HOH . J 6 HOH B 15 416 29 HOH HOH . J 6 HOH B 16 417 30 HOH HOH . J 6 HOH B 17 418 31 HOH HOH . J 6 HOH B 18 419 32 HOH HOH . J 6 HOH B 19 420 33 HOH HOH . J 6 HOH B 20 421 35 HOH HOH . J 6 HOH B 21 422 38 HOH HOH . J 6 HOH B 22 423 40 HOH HOH . J 6 HOH B 23 424 41 HOH HOH . J 6 HOH B 24 425 42 HOH HOH . J 6 HOH B 25 426 43 HOH HOH . J 6 HOH B 26 427 46 HOH HOH . J 6 HOH B 27 428 47 HOH HOH . J 6 HOH B 28 429 49 HOH HOH . J 6 HOH B 29 430 50 HOH HOH . J 6 HOH B 30 431 51 HOH HOH . J 6 HOH B 31 432 53 HOH HOH . J 6 HOH B 32 433 54 HOH HOH . J 6 HOH B 33 434 57 HOH HOH . J 6 HOH B 34 435 59 HOH HOH . J 6 HOH B 35 436 60 HOH HOH . J 6 HOH B 36 437 61 HOH HOH . J 6 HOH B 37 438 64 HOH HOH . J 6 HOH B 38 439 66 HOH HOH . J 6 HOH B 39 440 67 HOH HOH . J 6 HOH B 40 441 68 HOH HOH . J 6 HOH B 41 442 69 HOH HOH . J 6 HOH B 42 443 70 HOH HOH . J 6 HOH B 43 444 72 HOH HOH . J 6 HOH B 44 445 73 HOH HOH . J 6 HOH B 45 446 77 HOH HOH . J 6 HOH B 46 447 79 HOH HOH . J 6 HOH B 47 448 84 HOH HOH . J 6 HOH B 48 449 85 HOH HOH . J 6 HOH B 49 450 86 HOH HOH . J 6 HOH B 50 451 88 HOH HOH . J 6 HOH B 51 452 90 HOH HOH . J 6 HOH B 52 453 97 HOH HOH . J 6 HOH B 53 454 98 HOH HOH . J 6 HOH B 54 455 101 HOH HOH . J 6 HOH B 55 456 103 HOH HOH . J 6 HOH B 56 457 105 HOH HOH . J 6 HOH B 57 458 106 HOH HOH . J 6 HOH B 58 459 108 HOH HOH . J 6 HOH B 59 460 110 HOH HOH . J 6 HOH B 60 461 111 HOH HOH . J 6 HOH B 61 462 113 HOH HOH . J 6 HOH B 62 463 116 HOH HOH . J 6 HOH B 63 464 117 HOH HOH . J 6 HOH B 64 465 118 HOH HOH . J 6 HOH B 65 466 119 HOH HOH . J 6 HOH B 66 467 120 HOH HOH . J 6 HOH B 67 468 122 HOH HOH . J 6 HOH B 68 469 123 HOH HOH . J 6 HOH B 69 470 124 HOH HOH . J 6 HOH B 70 471 126 HOH HOH . J 6 HOH B 71 472 130 HOH HOH . J 6 HOH B 72 473 131 HOH HOH . J 6 HOH B 73 474 134 HOH HOH . J 6 HOH B 74 475 135 HOH HOH . J 6 HOH B 75 476 136 HOH HOH . J 6 HOH B 76 477 139 HOH HOH . J 6 HOH B 77 478 145 HOH HOH . J 6 HOH B 78 479 146 HOH HOH . J 6 HOH B 79 480 147 HOH HOH . K 6 HOH C 1 301 11 HOH HOH . K 6 HOH C 2 302 12 HOH HOH . K 6 HOH C 3 303 17 HOH HOH . K 6 HOH C 4 304 22 HOH HOH . K 6 HOH C 5 305 23 HOH HOH . K 6 HOH C 6 306 26 HOH HOH . K 6 HOH C 7 307 27 HOH HOH . K 6 HOH C 8 308 52 HOH HOH . K 6 HOH C 9 309 55 HOH HOH . K 6 HOH C 10 310 56 HOH HOH . K 6 HOH C 11 311 58 HOH HOH . K 6 HOH C 12 312 65 HOH HOH . K 6 HOH C 13 313 74 HOH HOH . K 6 HOH C 14 314 75 HOH HOH . K 6 HOH C 15 315 80 HOH HOH . K 6 HOH C 16 316 83 HOH HOH . K 6 HOH C 17 317 91 HOH HOH . K 6 HOH C 18 318 102 HOH HOH . K 6 HOH C 19 319 109 HOH HOH . K 6 HOH C 20 320 112 HOH HOH . K 6 HOH C 21 321 121 HOH HOH . K 6 HOH C 22 322 129 HOH HOH . K 6 HOH C 23 323 132 HOH HOH . K 6 HOH C 24 324 138 HOH HOH . K 6 HOH C 25 325 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . H 5 -24.965 -36.807 7.713 1 66.29 ? PA NAP 300 C 1 HETATM 2 O O1A NAP . . . H 5 -25.916 -37.931 7.797 1 67.92 ? O1A NAP 300 C 1 HETATM 3 O O2A NAP . . . H 5 -24.14 -36.164 8.753 1 70.19 ? O2A NAP 300 C 1 HETATM 4 O O5B NAP . . . H 5 -24.982 -36.083 6.296 1 67.42 ? O5B NAP 300 C 1 HETATM 5 C C5B NAP . . . H 5 -23.7 -35.843 5.712 1 70.14 ? C5B NAP 300 C 1 HETATM 6 C C4B NAP . . . H 5 -23.733 -35.238 4.317 1 72.15 ? C4B NAP 300 C 1 HETATM 7 O O4B NAP . . . H 5 -22.515 -34.604 3.928 1 72.24 ? O4B NAP 300 C 1 HETATM 8 C C3B NAP . . . H 5 -23.775 -36.454 3.367 1 73.39 ? C3B NAP 300 C 1 HETATM 9 O O3B NAP . . . H 5 -24.765 -36.294 2.341 1 74.25 ? O3B NAP 300 C 1 HETATM 10 C C2B NAP . . . H 5 -22.362 -36.655 2.813 1 73.14 ? C2B NAP 300 C 1 HETATM 11 O O2B NAP . . . H 5 -22.466 -37.404 1.563 1 75.76 ? O2B NAP 300 C 1 HETATM 12 C C1B NAP . . . H 5 -21.923 -35.18 2.752 1 72.04 ? C1B NAP 300 C 1 HETATM 13 N N9A NAP . . . H 5 -20.507 -34.822 2.633 1 71.14 ? N9A NAP 300 C 1 HETATM 14 C C8A NAP . . . H 5 -19.408 -35.332 3.272 1 70.41 ? C8A NAP 300 C 1 HETATM 15 N N7A NAP . . . H 5 -18.287 -34.684 2.863 1 70.13 ? N7A NAP 300 C 1 HETATM 16 C C5A NAP . . . H 5 -18.697 -33.781 1.988 1 69.38 ? C5A NAP 300 C 1 HETATM 17 C C6A NAP . . . H 5 -17.978 -32.835 1.273 1 69.95 ? C6A NAP 300 C 1 HETATM 18 N N6A NAP . . . H 5 -16.667 -32.72 1.405 1 70.34 ? N6A NAP 300 C 1 HETATM 19 N N1A NAP . . . H 5 -18.637 -31.975 0.406 1 68.78 ? N1A NAP 300 C 1 HETATM 20 C C2A NAP . . . H 5 -19.973 -32.055 0.247 1 67.88 ? C2A NAP 300 C 1 HETATM 21 N N3A NAP . . . H 5 -20.654 -32.972 0.946 1 68.96 ? N3A NAP 300 C 1 HETATM 22 C C4A NAP . . . H 5 -20.061 -33.847 1.824 1 69.91 ? C4A NAP 300 C 1 HETATM 23 O O3 NAP . . . H 5 -26.187 -35.848 8.197 1 66.74 ? O3 NAP 300 C 1 HETATM 24 P PN NAP . . . H 5 -26.391 -34.328 8.561 1 63.82 ? PN NAP 300 C 1 HETATM 25 O O1N NAP . . . H 5 -27.454 -33.774 7.749 1 65.51 ? O1N NAP 300 C 1 HETATM 26 O O2N NAP . . . H 5 -25.101 -33.591 8.445 1 65.04 ? O2N NAP 300 C 1 HETATM 27 O O5D NAP . . . H 5 -26.856 -34.49 10.092 1 64.79 ? O5D NAP 300 C 1 HETATM 28 C C5D NAP . . . H 5 -25.948 -35.042 11.058 1 64.94 ? C5D NAP 300 C 1 HETATM 29 C C4D NAP . . . H 5 -26.28 -36.477 11.431 1 64.44 ? C4D NAP 300 C 1 HETATM 30 O O4D NAP . . . H 5 -25.307 -36.909 12.392 1 65.62 ? O4D NAP 300 C 1 HETATM 31 C C3D NAP . . . H 5 -27.649 -36.735 12.113 1 65.64 ? C3D NAP 300 C 1 HETATM 32 O O3D NAP . . . H 5 -28.126 -38.073 11.76 1 67.68 ? O3D NAP 300 C 1 HETATM 33 C C2D NAP . . . H 5 -27.297 -36.675 13.623 1 65.31 ? C2D NAP 300 C 1 HETATM 34 O O2D NAP . . . H 5 -28.247 -37.318 14.478 1 64.8 ? O2D NAP 300 C 1 HETATM 35 C C1D NAP . . . H 5 -25.926 -37.3 13.657 1 65.39 ? C1D NAP 300 C 1 HETATM 36 N N1N NAP . . . H 5 -25.087 -36.953 14.807 1 65.74 ? N1N NAP 300 C 1 HETATM 37 C C2N NAP . . . H 5 -25.11 -35.601 15.268 1 65.38 ? C2N NAP 300 C 1 HETATM 38 C C3N NAP . . . H 5 -24.359 -35.228 16.391 1 64.36 ? C3N NAP 300 C 1 HETATM 39 C C7N NAP . . . H 5 -24.434 -33.762 16.856 1 63.44 ? C7N NAP 300 C 1 HETATM 40 O O7N NAP . . . H 5 -23.826 -33.425 17.856 1 65.04 ? O7N NAP 300 C 1 HETATM 41 N N7N NAP . . . H 5 -25.152 -32.922 16.136 1 62.38 ? N7N NAP 300 C 1 HETATM 42 C C4N NAP . . . H 5 -23.57 -36.235 17.046 1 63.94 ? C4N NAP 300 C 1 HETATM 43 C C5N NAP . . . H 5 -23.5 -37.599 16.593 1 64.12 ? C5N NAP 300 C 1 HETATM 44 C C6N NAP . . . H 5 -24.275 -37.935 15.46 1 65.4 ? C6N NAP 300 C 1 HETATM 45 P P2B NAP . . . H 5 -21.24 -37.805 0.523 1 75.38 ? P2B NAP 300 C 1 HETATM 46 O O1X NAP . . . H 5 -21.888 -38.794 -0.45 1 77.19 ? O1X NAP 300 C 1 HETATM 47 O O2X NAP . . . H 5 -20.743 -36.541 -0.055 1 73.41 ? O2X NAP 300 C 1 HETATM 48 O O3X NAP . . . H 5 -20.239 -38.55 1.388 1 75.17 ? O3X NAP 300 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #